RNA global alignment in the joint sequence–structure space using elastic shape analysis
暂无分享,去创建一个
Anuj Srivastava | Eric Klassen | Jose Laborde | Jinfeng Zhang | Anuj Srivastava | E. Klassen | Jinfeng Zhang | Daniel Robinson | Jose Laborde | Daniel Robinson
[1] Peter Willett,et al. Representation, searching and discovery of patterns of bases in complex RNA structures , 2003, J. Comput. Aided Mol. Des..
[2] J. Doudna. Structural genomics of RNA , 2000, Nature Structural Biology.
[3] Thomas Tuschl,et al. siRNAs: applications in functional genomics and potential as therapeutics , 2004, Nature Reviews Drug Discovery.
[4] Ruth Nussinov,et al. ARTS: alignment of RNA tertiary structures , 2005, ECCB/JBI.
[5] Haixu Tang,et al. RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment , 2010, Nucleic acids research.
[6] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[7] Peter Clote,et al. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities , 2007, Nucleic Acids Res..
[8] Anuj Srivastava,et al. Analysis of planar shapes using geodesic paths on shape spaces , 2004, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[9] Anuj Srivastava,et al. Shape Analysis of Elastic Curves in Euclidean Spaces , 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[10] D. W. Staple,et al. Open access, freely available online Primer Pseudoknots: RNA Structures with Diverse Functions , 2022 .
[11] Anuj Srivastava,et al. Structure-based RNA Function Prediction Using Elastic Shape Analysis , 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.
[12] Thomas Steinke,et al. Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors , 2009, Algorithms.
[13] Wei Liu,et al. Protein structure alignment using elastic shape analysis , 2010, BCB '10.
[14] S. Eddy. Non–coding RNA genes and the modern RNA world , 2001, Nature Reviews Genetics.
[15] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[16] H. Munro,et al. Mammalian protein metabolism , 1964 .
[17] J. Steitz,et al. The expanding universe of noncoding RNAs. , 2006, Cold Spring Harbor symposia on quantitative biology.
[18] Ryan R. Rahrig,et al. R3D Align: global pairwise alignment of RNA 3D structures using local superpositions , 2010, Bioinform..
[19] Anna Marie Pyle,et al. The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery. , 2004, Nucleic acids research.
[20] Anuj Srivastava,et al. A Novel Representation for Riemannian Analysis of Elastic Curves in Rn , 2007, 2007 IEEE Conference on Computer Vision and Pattern Recognition.
[21] Anuj Srivastava,et al. On Shape of Plane Elastic Curves , 2007, International Journal of Computer Vision.
[22] Steven E. Brenner,et al. SCOR: Structural Classification of RNA, version 2.0 , 2004, Nucleic Acids Res..
[23] Jennifer A. Doudna,et al. The chemical repertoire of natural ribozymes , 2002, Nature.
[24] Chih-Wei Wang,et al. iPARTS: an improved tool of pairwise alignment of RNA tertiary structures , 2010, Nucleic Acids Res..
[25] Anna Marie Pyle,et al. RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. , 2003, Nucleic acids research.
[26] G J Williams,et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1978, Archives of biochemistry and biophysics.
[27] Wei Liu,et al. A Mathematical Framework for Protein Structure Comparison , 2011, PLoS Comput. Biol..
[28] Marc A. Martí-Renom,et al. RNA structure alignment by a unit-vector approach , 2008, ECCB.
[29] Marc A. Martí-Renom,et al. SARA: a server for function annotation of RNA structures , 2009, Nucleic Acids Res..
[30] Craig L. Zirbel,et al. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures , 2007, Journal of mathematical biology.