Comparative genomic analysis of NAC transcriptional factors to dissect the regulatory mechanisms for cell wall biosynthesis

[1]  C. Douglas,et al.  The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus. , 2012, The New phytologist.

[2]  S. Balzergue,et al.  Disruption of LACCASE4 and 17 Results in Tissue-Specific Alterations to Lignification of Arabidopsis thaliana Stems[W] , 2011, Plant Cell.

[3]  R. Zhong,et al.  Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. , 2010, Molecular plant.

[4]  H. Fukuda,et al.  Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation[C][W] , 2010, Plant Cell.

[5]  Qian Gao,et al.  Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa , 2010, BMC Plant Biology.

[6]  James C. Liao,et al.  Biofuels: biomolecular engineering fundamentals and advances. , 2010, Annual review of chemical and biomolecular engineering.

[7]  John Ralph,et al.  Advances in modifying lignin for enhanced biofuel production. , 2010, Current opinion in plant biology.

[8]  Markus Pauly,et al.  Plant cell wall polymers as precursors for biofuels. , 2010, Current opinion in plant biology.

[9]  R. Dixon,et al.  An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula. , 2010, The Plant journal : for cell and molecular biology.

[10]  R. Zhong,et al.  The Arabidopsis Family GT43 Glycosyltransferases Form Two Functionally Nonredundant Groups Essential for the Elongation of Glucuronoxylan Backbone1[W][OA] , 2010, Plant Physiology.

[11]  Li Liu,et al.  A dynamic gene expression atlas covering the entire life cycle of rice. , 2010, The Plant journal : for cell and molecular biology.

[12]  Ziv Shani,et al.  Plant cell wall reconstruction toward improved lignocellulosic production and processability , 2010 .

[13]  R. Zhong,et al.  The Arabidopsis Family GT 43 Glycosyltransferases Form Two Functionally Nonredundant Groups Essential for the Elongation of Glucuronoxylan Backbone 1 [ W ] [ OA ] , 2010 .

[14]  R. Zhong,et al.  Functional Characterization of Poplar Wood-Associated NAC Domain Transcription Factors1[C][OA] , 2009, Plant Physiology.

[15]  R. Zhong,et al.  MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis. , 2009, Plant & cell physiology.

[16]  Nobutaka Mitsuda,et al.  A chimeric NST repressor has the potential to improve glucose productivity from plant cell walls. , 2009, Journal of biotechnology.

[17]  R. Zhong,et al.  MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis[C][W] , 2009, The Plant Cell Online.

[18]  Weichang Chen,et al.  Another formula for calculating the gene change rate in real-time RT-PCR , 2009, Molecular Biology Reports.

[19]  Nobutaka Mitsuda,et al.  NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity. , 2008, The Plant journal : for cell and molecular biology.

[20]  R. Zhong,et al.  A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis , 2008, The Plant Cell Online.

[21]  Joshua S Yuan,et al.  Plants to power: bioenergy to fuel the future. , 2008, Trends in plant science.

[22]  L. Xiong,et al.  Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice , 2008, Plant Molecular Biology.

[23]  Chengsong Zhao,et al.  XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem. , 2007, The Plant journal : for cell and molecular biology.

[24]  R. Goodacre,et al.  Comparison of five xylan synthesis mutants reveals new insight into the mechanisms of xylan synthesis. , 2007, The Plant journal : for cell and molecular biology.

[25]  Qingqiu Gong,et al.  An Arabidopsis gene network based on the graphical Gaussian model. , 2007, Genome research.

[26]  R. Zhong,et al.  The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis , 2007, The Plant Cell Online.

[27]  Zhen Su,et al.  EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species , 2007, BMC Genomics.

[28]  K. Shinozaki,et al.  Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. , 2007, The Plant journal : for cell and molecular biology.

[29]  R. Zhong,et al.  Two NAC domain transcription factors, SND1 and NST1, function redundantly in regulation of secondary wall synthesis in fibers of Arabidopsis , 2007, Planta.

[30]  David K. Johnson,et al.  Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production , 2007, Science.

[31]  Staffan Persson,et al.  The Arabidopsis irregular xylem8 Mutant Is Deficient in Glucuronoxylan and Homogalacturonan, Which Are Essential for Secondary Cell Wall Integrity[W] , 2007, The Plant Cell Online.

[32]  K. Shinozaki,et al.  NAC Transcription Factors, NST1 and NST3, Are Key Regulators of the Formation of Secondary Walls in Woody Tissues of Arabidopsis[W][OA] , 2007, The Plant Cell Online.

[33]  Kengo Kinoshita,et al.  ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis , 2006, Nucleic Acids Res..

[34]  M. Galbe,et al.  Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production , 2007 .

[35]  M. Pauly,et al.  Interactions between MUR10/CesA7-Dependent Secondary Cellulose Biosynthesis and Primary Cell Wall Structure1[OA] , 2006, Plant Physiology.

[36]  Rui An,et al.  A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis , 2006, Plant Molecular Biology.

[37]  Yajun Wu,et al.  Mutant identification and characterization of the laccase gene family in Arabidopsis. , 2006, Journal of experimental botany.

[38]  C. Somerville,et al.  Development and application of a suite of polysaccharide-degrading enzymes for analyzing plant cell walls. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[39]  Charlotte K. Williams,et al.  The Path Forward for Biofuels and Biomaterials , 2006, Science.

[40]  K. Shinozaki,et al.  The NAC Transcription Factors NST1 and NST2 of Arabidopsis Regulate Secondary Wall Thickenings and Are Required for Anther Dehiscencew⃞ , 2005, The Plant Cell Online.

[41]  D. Van Der Straeten,et al.  The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis. , 2005, The Plant journal : for cell and molecular biology.

[42]  Jeffrey D. Pylatuik,et al.  Comparison of Transcript Profiling on Arabidopsis Microarray Platform Technologies , 2005, Plant Molecular Biology.

[43]  Royston Goodacre,et al.  Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics , 2005, The Plant Cell Online.

[44]  Jian-Kang Zhu,et al.  Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. , 2005, The Plant journal : for cell and molecular biology.

[45]  Ying Fu,et al.  Arabidopsis Interdigitating Cell Growth Requires Two Antagonistic Pathways with Opposing Action on Cell Morphogenesis , 2005, Cell.

[46]  Kazuo Shinozaki,et al.  A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. , 2004, The Plant journal : for cell and molecular biology.

[47]  T. Boller,et al.  Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding , 2001, Plant Molecular Biology.

[48]  Zhenbiao Yang,et al.  A Genome-Wide Analysis of Arabidopsis Rop-Interactive CRIB Motif–Containing Proteins That Act as Rop GTPase Targets Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010218. , 2001, The Plant Cell Online.

[49]  H Fujisawa,et al.  Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. , 1997, The Plant cell.

[50]  C. Somerville,et al.  Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. , 1997, The Plant cell.

[51]  D. Delmer,et al.  Higher plants contain homologs of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[52]  J. Mol,et al.  The No Apical Meristem Gene of Petunia Is Required for Pattern Formation in Embryos and Flowers and Is Expressed at Meristem and Primordia Boundaries , 1996, Cell.

[53]  B. Chattoo,et al.  Role of media constituents and proline in callus growth, somatic embryogenesis and regeneration of Oryza sativa cv Indica. , 1993, Indian journal of experimental biology.

[54]  K. Shinozaki,et al.  Molecular Cloning and Characterization of 9 cDNAs for Genes That Are Responsive to Desiccation in Arabidopsis thaliana: SequenceAnalysis of One cDNA Clone That Encodes a Putative Transmembrane Channel Protein , 1992 .