Improved temporal resolution for mapping brain metabolism using functional PET and anatomical MRI knowledge

Functional positron emission tomography (fPET) imaging using continuous infusion of [18F]-fluorodeoxyglucose (FDG) is a novel neuroimaging technique to track dynamic glucose utilization in the brain. In comparison to conventional static PET, fPET maintains a sustained supply of glucose in the blood plasma which improves sensitivity to measure dynamic glucose changes in the brain, and enables mapping of dynamic brain activity in task-based and resting-state fPET studies. However, there is a trade-off between temporal resolution and spatial noise due to the low concentration of FDG and the limited sensitivity of multi-ring PET scanners. Images from fPET studies suffer from partial volume errors and residual scatter noise that may cause the cerebral metabolic functional maps to be biased. Gaussian smoothing filters used to denoise the fPET images are suboptimal, as they introduce additional partial volume errors. In this work, a post-processing framework based on a magnetic resonance (MR) Bowsher-like prior was used to improve the spatial and temporal signal to noise characteristics of the fPET images. The performance of the MR guided method was compared with conventional Gaussian filtering using both simulated and in vivo task fPET datasets. The results demonstrate that the MR guided fPET framework reduces the partial volume errors, enhances the sensitivity of identifying brain activation, and improves the anatomical accuracy for mapping changes of brain metabolism in response to a visual stimulation task. The framework extends the use of functional PET to investigate the dynamics of brain metabolic responses for faster presentation of brain activation tasks, and for applications in low dose PET imaging.

[1]  Fernando Boada,et al.  Evaluation of Parallel Level Sets and Bowsher’s Method as Segmentation-Free Anatomical Priors for Time-of-Flight PET Reconstruction , 2018, IEEE Transactions on Medical Imaging.

[2]  Siegfried Kasper,et al.  Reduced task durations in functional PET imaging with [18F]FDG approaching that of functional MRI , 2018, NeuroImage.

[3]  J. Dubroff,et al.  An overview of PET neuroimaging. , 2013, Seminars in nuclear medicine.

[4]  Suyash P. Awate,et al.  Feature-Preserving MRI Denoising: A Nonparametric Empirical Bayes Approach , 2007, IEEE Transactions on Medical Imaging.

[5]  Jong Hoon Kim,et al.  Penalized PET Reconstruction Using Deep Learning Prior and Local Linear Fitting , 2018, IEEE Transactions on Medical Imaging.

[6]  Richard M. Leahy,et al.  Non-Local Means Denoising of Dynamic PET Images , 2013, PloS one.

[7]  Sébastien Ourselin,et al.  Markov random field and Gaussian mixture for segmented MRI-based partial volume correction in PET , 2012, Physics in medicine and biology.

[8]  E. Hoffman,et al.  Tomographic measurement of local cerebral glucose metabolic rate in humans with (F‐18)2‐fluoro‐2‐deoxy‐D‐glucose: Validation of method , 1979, Annals of neurology.

[9]  Gary F. Egan,et al.  Analysis of continuous infusion functional PET (fPET) in the human brain , 2019, NeuroImage.

[10]  Bruce R. Rosen,et al.  Dynamic functional imaging of brain glucose utilization using fPET-FDG , 2014, NeuroImage.

[11]  P. Stroman,et al.  The role(s) of astrocytes and astrocyte activity in neurometabolism, neurovascular coupling, and the production of functional neuroimaging signals , 2011, The European journal of neuroscience.

[12]  Dimitri Van De Ville,et al.  The impact of denoising on independent component analysis of functional magnetic resonance imaging data , 2013, Journal of Neuroscience Methods.

[13]  Rupert Lanzenberger,et al.  Task-relevant brain networks identified with simultaneous PET/MR imaging of metabolism and connectivity , 2017, Brain Structure and Function.

[14]  Jörn Diedrichsen,et al.  A probabilistic MR atlas of the human cerebellum , 2009, NeuroImage.

[15]  Jean-Michel Morel,et al.  A non-local algorithm for image denoising , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[16]  Fredrik Kahl,et al.  Performance of a feature-based algorithm for 3D-3D registration of CT angiography to cone-beam CT for endovascular repair of complex abdominal aortic aneurysms , 2018, BMC Medical Imaging.

[17]  K. R. Ridderinkhof,et al.  No Evidence That Frontal Eye Field tDCS Affects Latency or Accuracy of Prosaccades , 2018, bioRxiv.

[18]  Ninon Burgos,et al.  Attenuation Correction Synthesis for Hybrid PET-MR Scanners , 2013, MICCAI.

[19]  Zikuan Chen,et al.  Effect of Spatial Smoothing on Task fMRI ICA and Functional Connectivity , 2018, Front. Neurosci..

[20]  Manuchehr Soleimani,et al.  TIGRE: a MATLAB-GPU toolbox for CBCT image reconstruction , 2016 .

[21]  Francesco Sforazzini,et al.  From simultaneous to synergistic MR‐PET brain imaging: A review of hybrid MR‐PET imaging methodologies , 2018, Human brain mapping.

[22]  Aapo Hyvärinen,et al.  A Fast Fixed-Point Algorithm for Independent Component Analysis , 1997, Neural Computation.

[23]  Simon R. Arridge,et al.  What approach to brain partial volume correction is best for PET/MRI? , 2013 .

[24]  Ronald J. Jaszczak,et al.  Bayesian reconstruction and use of anatomical a priori information for emission tomography , 1996, IEEE Trans. Medical Imaging.

[25]  Zhaolin Chen,et al.  Joint PET-MRI image reconstruction using a patch-based joint-dictionary prior , 2020, Medical Image Anal..

[26]  D. Chakrabarti,et al.  A fast fixed - point algorithm for independent component analysis , 1997 .

[27]  Arman Rahmim,et al.  Subtle MR Guidance for Partial Volume Correction of PET Images: A Comparison of Techniques , 2019, 2019 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC).

[28]  Zhaolin Chen,et al.  Joint PET+MRI Patch-Based Dictionary for Bayesian Random Field PET Reconstruction , 2018, MICCAI.

[29]  Arno Klein,et al.  A reproducible evaluation of ANTs similarity metric performance in brain image registration , 2011, NeuroImage.

[30]  G Lucignani,et al.  Measurement of regional cerebral glucose utilization with fluorine-18-FDG and PET in heterogeneous tissues: theoretical considerations and practical procedure. , 1993, Journal of nuclear medicine : official publication, Society of Nuclear Medicine.

[31]  Pierrick Coupé,et al.  Adaptive multiresolution non-local means filter for three-dimensional magnetic resonance image denoising , 2012 .

[32]  E. Hoffman,et al.  TOMOGRAPHIC MEASUREMENT OF LOCAL CEREBRAL GLUCOSE METABOLIC RATE IN HUMANS WITH (F‐18)2‐FLUORO-2‐DEOXY-D‐GLUCOSE: VALIDATION OF METHOD , 1980, Annals of neurology.

[33]  Suyash P. Awate,et al.  Unsupervised, information-theoretic, adaptive image filtering for image restoration , 2006, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[34]  Zhaolin Chen,et al.  Analysis of continuous infusion functional PET (fPET) in the human brain , 2020, NeuroImage.

[35]  Fan Yang,et al.  PET Image Deblurring and Super-Resolution With an MR-Based Joint Entropy Prior , 2019, IEEE Transactions on Computational Imaging.

[36]  Nassir Navab,et al.  Direct Parametric Reconstruction Using Anatomical Regularization for Simultaneous PET/MRI Data , 2015, IEEE Transactions on Medical Imaging.

[37]  Suyash P. Awate,et al.  Higher-order image statistics for unsupervised, information-theoretic, adaptive, image filtering , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[38]  Jorge Nocedal,et al.  A Limited Memory Algorithm for Bound Constrained Optimization , 1995, SIAM J. Sci. Comput..

[39]  Eric Guedj,et al.  The renaissance of functional 18F-FDG PET brain activation imaging , 2018, European Journal of Nuclear Medicine and Molecular Imaging.

[40]  Rupert Lanzenberger,et al.  Quantification of Task-Specific Glucose Metabolism with Constant Infusion of 18F-FDG , 2016, The Journal of Nuclear Medicine.

[41]  David Atkinson,et al.  Joint reconstruction of PET-MRI by exploiting structural similarity , 2014, Inverse Problems.

[42]  Erkki Oja,et al.  Independent component analysis: algorithms and applications , 2000, Neural Networks.

[43]  C. D. Arnett,et al.  Glucose Metabolic Rate Kinetic Model Parameter Determination in Humans: The Lumped Constants and Rate Constants for [18F]Fluorodeoxyglucose and [11C]Deoxyglucose , 1985, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[44]  Francesco Sforazzini,et al.  Simultaneous task-based BOLD-fMRI and [18-F] FDG functional PET for measurement of neuronal metabolism in the human visual cortex , 2018, NeuroImage.

[45]  J Mazziotta,et al.  A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). , 2001, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[46]  Peyman Milanfar,et al.  A Tour of Modern Image Filtering: New Insights and Methods, Both Practical and Theoretical , 2013, IEEE Signal Processing Magazine.