Software-Based Real-Time Acquisition and Processing of PET Detector Raw Data

In modern positron emission tomography (PET) readout architectures, the position and energy estimation of scintillation events (singles) and the detection of coincident events (coincidences) are typically carried out on highly integrated, programmable printed circuit boards. The implementation of advanced singles and coincidence processing (SCP) algorithms for these architectures is often limited by the strict constraints of hardware-based data processing. In this paper, we present a software-based data acquisition and processing architecture (DAPA) that offers a high degree of flexibility for advanced SCP algorithms through relaxed real-time constraints and an easily extendible data processing framework. The DAPA is designed to acquire detector raw data from independent (but synchronized) detector modules and process the data for singles and coincidences in real-time using a center-of-gravity (COG)-based, a leastsquares (LS)-based, or a maximum-likelihood (ML)-based crystal position and energy estimation approach (CPEEA). To test the DAPA, we adapted it to a preclinical PET detector that outputs detector raw data from 60 independent digital silicon photomultiplier (dSiPM)-based detector stacks and evaluated it with a [18F]fluorodeoxyglucose-filled hot-rod phantom. The DAPA is highly reliable with less than 0.1% of all detector raw data lost or corrupted. For high validation thresholds (37.1 ± 12.8 photons per pixel) of the dSiPM detector tiles, the DAPA is real time capable up to 55 MBq for the COG-based CPEEA, up to 31 MBq for the LS-based CPEEA, and up to 28 MBq for the ML-based CPEEA. Compared to the COG-based CPEEA, the rods in the image reconstruction of the hot-rod phantom are only slightly better separable and less blurred for the LSand ML-based CPEEA. While the coincidence time resolution (~550 ps) and energy resolution (~12.3%) are comparable for all three CPEEA, the system sensitivity is up to 2.5× higher for the LS- and ML-based CPEEA.

[1]  Yong Choi,et al.  MR insertable brain PET using tileable GAPD arrays , 2010, IEEE Nuclear Science Symposuim & Medical Imaging Conference.

[2]  Volkmar Schulz,et al.  FPGA-based singles and coincidences processing pipeline for integrated digital PET/MR detectors , 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record (NSS/MIC).

[3]  Paul E Kinahan,et al.  The positron emission mammography/tomography breast imaging and biopsy system (PEM/PET): design, construction and phantom-based measurements , 2008, Physics in medicine and biology.

[4]  Carsten Degenhardt,et al.  The digital silicon photomultiplier — System architecture and performance evaluation , 2010, IEEE Nuclear Science Symposuim & Medical Imaging Conference.

[5]  Y. Charon,et al.  The Tumor Resection Camera (TReCam), a multipixel imaging probe for radio-guided surgery , 2009, 2009 IEEE Nuclear Science Symposium Conference Record (NSS/MIC).

[6]  L. Shepp,et al.  Maximum Likelihood Reconstruction for Emission Tomography , 1983, IEEE Transactions on Medical Imaging.

[7]  P. Relvas,et al.  The Clear-PEM Electronics System , 2006, IEEE Transactions on Nuclear Science.

[8]  C. W. Lerche,et al.  Towards Software-Based Real-Time Singles and Coincidence Processing of Digital PET Detector Raw Data , 2013, IEEE Transactions on Nuclear Science.

[9]  T K Lewellen,et al.  Design of a Real Time FPGA-Based Three Dimensional Positioning Algorithm , 2009, IEEE Transactions on Nuclear Science.

[10]  Volkmar Schulz,et al.  An MR-compatible singles detection and processing unit for simultaneous preclinical PET/MR , 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record (NSS/MIC).

[11]  T. Bukki,et al.  Performance test of the MiniPET-II small animal scanner according to the NEMA NU-4 standard , 2009, 2009 IEEE Nuclear Science Symposium Conference Record (NSS/MIC).

[12]  V. Schulz,et al.  Data Processing for a High Resolution Preclinical PET Detector Based on Philips DPC Digital SiPMs , 2015, IEEE Transactions on Nuclear Science.

[13]  Volkmar Schulz,et al.  MR compatibility aspects of a silicon photomultiplier-based PET/RF insert with integrated digitisation , 2014, Physics in medicine and biology.

[14]  B. Zwaans,et al.  Arrays of digital Silicon Photomultipliers — Intrinsic performance and application to scintillator readout , 2010, IEEE Nuclear Science Symposuim & Medical Imaging Conference.

[15]  Val J Lowe,et al.  NEMA NU 2-2007 performance measurements of the Siemens Inveon™ preclinical small animal PET system , 2009, Physics in medicine and biology.

[16]  M. Budassi,et al.  An MRI-compatible PET insert for whole body studies in rodents at high functional and anatomical resolution , 2011, 2011 IEEE Nuclear Science Symposium Conference Record.

[17]  René M. Botnar,et al.  A Digital Preclinical PET/MRI Insert and Initial Results , 2015, IEEE Transactions on Medical Imaging.

[18]  D. Schaart,et al.  Improved Nearest Neighbor Methods for Gamma Photon Interaction Position Determination in Monolithic Scintillator PET Detectors , 2011, IEEE Transactions on Nuclear Science.

[19]  V. Schulz,et al.  PET/MRI insert using digital SiPMs: Investigation of MR-compatibility , 2014, Nuclear instruments & methods in physics research. Section A, Accelerators, spectrometers, detectors and associated equipment.

[20]  Volkmar Schulz,et al.  Singles and coincidence processing for a digital PET/MR system using SiPM detectors , 2011, 2011 IEEE Nuclear Science Symposium Conference Record.

[21]  R. Gadea,et al.  Corrected position estimation in PET detector modules with multi-anode PMTs using neural networks , 2005, IEEE Transactions on Nuclear Science.

[22]  René M. Botnar,et al.  A Self-Normalization Reconstruction Technique for PET Scans Using the Positron Emission Data , 2012, IEEE Transactions on Medical Imaging.

[23]  Wang Yonggang,et al.  Self-organizing map neural network based positioning scheme for continuous crystal PET detectors , 2013, 2013 IEEE Nuclear Science Symposium and Medical Imaging Conference (2013 NSS/MIC).

[24]  Til Aach,et al.  Simultaneous Reconstruction of Activity and Attenuation for PET/MR , 2011, IEEE Transactions on Medical Imaging.

[25]  David P. Reed,et al.  Synchronization with eventcounts and sequencers , 1979, CACM.

[26]  S.S. Junnarkar,et al.  Digital Coincidence Processing for the RatCAP Conscious Rat Brain PET Scanner , 2006, IEEE Transactions on Nuclear Science.

[27]  H. Anger,et al.  MAPPING THE DISTRIBUTION OF GAMMA-RAY-EMITTING ISOTOPES WITH THE SCINTILLATION CAMERA , 1958 .

[28]  M. Haselman,et al.  Evolution of the design of a second generation FireWire based data acquisition system , 2010, IEEE Nuclear Science Symposuim & Medical Imaging Conference.

[29]  Volkmar Schulz,et al.  Maximum likelihood based positioning and energy correction for pixelated solid state PET detectors , 2011, 2011 IEEE Nuclear Science Symposium Conference Record.

[30]  S. Paul,et al.  A sampling ADC data acquisition system for positron emission tomography , 2006, IEEE Transactions on Nuclear Science.

[31]  W W Moses,et al.  OpenPET: A Flexible Electronics System for Radiotracer Imaging , 2009, IEEE Transactions on Nuclear Science.

[32]  Tadashi Watabe,et al.  Development of a Si-PM-based high-resolution PET system for small animals , 2010, Physics in medicine and biology.

[33]  Scott Hauck,et al.  FPGA-based front-end electronics for positron emission tomography , 2009, FPGA '09.

[34]  Message Passing Interface Forum MPI: A message - passing interface standard , 1994 .

[35]  Giacomo Borghi,et al.  Probabilities of triggering and validation in a digital silicon photomultiplier , 2014 .

[36]  Jae Sung Lee,et al.  Initial Results of Simultaneous PET/MRI Experiments with an MRI-Compatible Silicon Photomultiplier PET Scanner , 2012, The Journal of Nuclear Medicine.

[37]  Edoardo Charbon,et al.  SPADnet: Embedded Coincidence in a Smart Sensor Network for PET Applications , 2014 .

[38]  Scott Hauck,et al.  Design of an FPGA based algorithm for real-time solutions of Statistics-Based Positioning , 2010, 2008 IEEE Nuclear Science Symposium Conference Record.

[39]  Volkmar Schulz,et al.  SiPM based preclinical PET/MR insert for a human 3T MR: first imaging experiments , 2011, 2011 IEEE Nuclear Science Symposium Conference Record.

[40]  Volkmar Schulz,et al.  Development of an MRI compatible digital SiPM based PET detector stack for simultaneous preclinical PET/MRI , 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record (NSS/MIC).

[41]  R Taschereau,et al.  NEMA NU-4 performance evaluation of PETbox4, a high sensitivity dedicated PET preclinical tomograph , 2013, Physics in medicine and biology.

[42]  G. Brandenburg,et al.  The data acquisition system of ClearPET neuro - a small animal PET scanner , 2006, IEEE Transactions on Nuclear Science.

[43]  R. Fontaine,et al.  The Hardware and Signal Processing Architecture of LabPET™, a Small Animal APD-Based Digital PET Scanner , 2009, IEEE Transactions on Nuclear Science.

[44]  C. Stearns,et al.  Random coincidence estimation from single event rates on the Discovery ST PET/CT scanner , 2003, 2003 IEEE Nuclear Science Symposium. Conference Record (IEEE Cat. No.03CH37515).

[45]  Craig S. Levin,et al.  PET DAQ system for compressed sensing detector modules , 2012, 2012 IEEE Nuclear Science Symposium and Medical Imaging Conference Record (NSS/MIC).