Blood transcriptional signatures of multiple sclerosis: Unique gene expression of disease activity

Multiple sclerosis (MS) is a central nervous system disease with an unpredictable course and outcome. Peripheral blood mononuclear cells (PBMCs) are involved in the disease pathogenesis and induce active demyelination. Using oligonucleotide microarrays, we identified a statistically significant transcriptional signature of 1,109 genes in PBMCs from 26 MS patients, irrespective of disease activation state or immunomodulatory treatment. This signature contains genes that implicate underlying processes involved in MS pathogenesis including T‐cell activation and expansion, inflammation, and apoptosis. Another transcriptional signature of 721 genes involved in cellular recruitment, epitope spreading, and escape from regulatory immune surveillance identified MS patients in acute relapse compared with remission. Our results offer new opportunity for understanding the mechanisms involved in MS and indicate that gene expression patterns in PBMCs contain information about a remote‐target disease process that may be useful for diagnosis and future tailoring of therapeutic strategies for MS.

[1]  G. Hunninghake,et al.  Integrin receptors are crucial for the restimulation of activated T lymphocytes. , 2003, American journal of respiratory cell and molecular biology.

[2]  Ash A. Alizadeh,et al.  Individuality and variation in gene expression patterns in human blood , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Nir Friedman,et al.  Practical approaches to analyzing results of microarray experiments. , 2002, American journal of respiratory cell and molecular biology.

[4]  David Y Jackson,et al.  Alpha 4 integrin antagonists. , 2002, Current pharmaceutical design.

[5]  Jorge R. Oksenberg,et al.  Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis , 2002, Nature Medicine.

[6]  C. Thompson,et al.  Pathways of Apoptosis in Lymphocyte Development, Homeostasis, and Disease , 2002, Cell.

[7]  A. Rudensky,et al.  A Role for Cathepsin L and Cathepsin S in Peptide Generation for MHC Class II Presentation1 , 2002, The Journal of Immunology.

[8]  Y. Furukawa,et al.  The human programmed cell death-2 (PDCD2) gene is a target of BCL6 repression: Implications for a role of BCL6 in the down-regulation of apoptosis , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[9]  L. Hale,et al.  An Analysis of T Cell Intrinsic Roles of E2A by Conditional Gene Disruption in the Thymus , 2002 .

[10]  Chen Dong,et al.  MAP kinases in the immune response. , 2002, Annual review of immunology.

[11]  Peter Lipsky,et al.  Cytokines and autoimmunity , 2002, Nature Reviews Immunology.

[12]  D. Chaplin Faculty Opinions recommendation of Constitutive expression of LIGHT on T cells leads to lymphocyte activation, inflammation, and tissue destruction. , 2001 .

[13]  S. Ludwin,et al.  Microarray analysis of gene expression in multiple sclerosis and EAE identifies 5-lipoxygenase as a component of inflammatory lesions , 2001, Journal of Neuroimmunology.

[14]  F R Sharp,et al.  Blood genomic responses differ after stroke, seizures, hypoglycemia, and hypoxia: Blood genomic fingerprints of disease , 2001, Annals of neurology.

[15]  J. Richert,et al.  Demyelination occurring during anti-tumor necrosis factor alpha therapy for inflammatory arthritides. , 2001, Arthritis and rheumatism.

[16]  M. Gougeon,et al.  Beneficial effect of co‐polymer 1 on cytokine production by CD4 T cells in multiple sclerosis , 2001, Immunology.

[17]  Martin Deeg,et al.  Cathepsin S and an asparagine‐specific endoprotease dominate the proteolytic processing of human myelin basic protein in vitro , 2001, European journal of immunology.

[18]  Jorge R. Oksenberg,et al.  The Influence of the Proinflammatory Cytokine, Osteopontin, on Autoimmune Demyelinating Disease , 2001, Science.

[19]  H. McFarland,et al.  CD4+CD28- costimulation-independent T cells in multiple sclerosis. , 2001, The Journal of clinical investigation.

[20]  D. Chaplin,et al.  Interleukin-1β Promotes Repair of the CNS , 2001, The Journal of Neuroscience.

[21]  L. Staudt,et al.  Complex immunomodulatory effects of interferon‐β in multiple sclerosis include the upregulation of T helper 1‐associated marker genes , 2001, Annals of neurology.

[22]  M. Ramanathan,et al.  In vivo gene expression revealed by cDNA arrays: the pattern in relapsing–remitting multiple sclerosis patients compared with normal subjects , 2001, Journal of Neuroimmunology.

[23]  Xiaodong Wang,et al.  Regulation of Apoptosis by Phosphatidylinositol 4,5-Bisphosphate Inhibition of Caspases, and Caspase Inactivation of Phosphatidylinositol Phosphate 5-Kinases* , 2001, The Journal of Biological Chemistry.

[24]  C. Li,et al.  Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[25]  D. Chaplin,et al.  Interleukin-1beta promotes repair of the CNS. , 2001, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[26]  C. Li,et al.  Analyzing high‐density oligonucleotide gene expression array data , 2001, Journal of cellular biochemistry.

[27]  A. Achiron,et al.  Multiple sclerosis-from probable to definite diagnosis: a 7-year prospective study. , 2000, Archives of neurology.

[28]  R Grosschedl,et al.  Wnt signaling regulates B lymphocyte proliferation through a LEF-1 dependent mechanism. , 2000, Immunity.

[29]  C. Caux,et al.  Up-Regulation of Macrophage Inflammatory Protein-3α/CCL20 and CC Chemokine Receptor 6 in Psoriasis1 , 2000, The Journal of Immunology.

[30]  Nir Friedman,et al.  Tissue classification with gene expression profiles , 2000, RECOMB '00.

[31]  Nir Friedman,et al.  Tissue classification with gene expression profiles. , 2000 .

[32]  J. Trent,et al.  Analysis of gene expression in multiple sclerosis lesions using cDNA microarrays , 1999 .

[33]  C. Polman,et al.  Association of interleukin-1β and interleukin-1 receptor antagonist genes with disease severity in MS , 1999, Neurology.

[34]  A. Watson,et al.  Technology for microarray analysis of gene expression. , 1998, Current opinion in biotechnology.

[35]  H. Link The cytokine storm in multiple sclerosis , 1998, Multiple sclerosis.

[36]  M. Clerici,et al.  Cytokine production and surface marker expression in acute and stable multiple sclerosis: altered IL-12 production and augmented signaling lymphocytic activation molecule (SLAM)-expressing lymphocytes in acute multiple sclerosis. , 1998, Journal of immunology.

[37]  G. Wong,et al.  TNF is a potent anti-inflammatory cytokine in autoimmune-mediated demyelination , 1998, Nature Medicine.

[38]  G. Nemerow,et al.  Apoptosis signaling pathway in T cells is composed of ICE/Ced-3 family proteases and MAP kinase kinase 6b. , 1997, Immunity.

[39]  H. Fales,et al.  Determination of a native proteolytic site in myelin-associated glycoprotein. , 1997, Biochemistry.

[40]  A. Levine,et al.  Wild-type p53 negatively regulates the expression of a microtubule-associated protein. , 1996, Genes & development.

[41]  K. Vousden,et al.  Characterisation of human cyclin G1 and G2: DNA damage inducible genes. , 1996, Oncogene.

[42]  M. Lenardo,et al.  Induction of apoptosis in mature T cells by tumour necrosis factor , 1995, Nature.

[43]  F. Chan,et al.  A role for the orphan steroid receptor Nur77 in apoptosis accompanying antigen-induced negative selection. , 1995, Immunity.

[44]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[45]  C. Bever,et al.  Increased cathepsin B activity in peripheral blood mononuclear cells of multiple sclerosis patients , 1994, Neurology.

[46]  D. Emilie,et al.  [Cytokines and autoimmunity]. , 1994, La Revue du praticien.

[47]  C. Brosnan,et al.  Expression of CSF-1, c-fms, and MCP-1 in the central nervous system of rats with experimental allergic encephalomyelitis. , 1993, Journal of immunology.

[48]  H. Berlet,et al.  Elucidation of cathepsin B‐like activity associated with extracts of human myelin basic protein , 1985, FEBS letters.

[49]  J. Kurtzke Rating neurologic impairment in multiple sclerosis , 1983, Neurology.

[50]  D. Silberberg,et al.  New diagnostic criteria for multiple sclerosis: Guidelines for research protocols , 1983, Annals of neurology.