Using metabolomic approaches to explore chemical diversity in rice.
暂无分享,去创建一个
Kazuki Saito | A. Fukushima | M. Kusano | R. Nakabayashi | Yozo Okazaki | Zhigang Yang | K. Saito | Ryo Nakabayashi
[1] Andrew R. Jakubowski,et al. Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding , 2015, Metabolomics.
[2] Atsushi Fukushima,et al. A network perspective on nitrogen metabolism from model to crop plants using integrated 'omics' approaches. , 2014, Journal of experimental botany.
[3] Kazuki Saito,et al. Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism , 2014, The Plant journal : for cell and molecular biology.
[4] Wei Chen,et al. Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism , 2014, Nature Genetics.
[5] Jun Wang,et al. The 3,000 rice genomes project: new opportunities and challenges for future rice research , 2014, GigaScience.
[6] A. Fernie,et al. Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics , 2014, Scientific Reports.
[7] T. Huan,et al. IsoMS: automated processing of LC-MS data generated by a chemical isotope labeling metabolomics platform. , 2014, Analytical chemistry.
[8] J. Kopka,et al. Annotating unknown components from GC/EI-MS-based metabolite profiling experiments using GC/APCI(+)-QTOFMS , 2014, Metabolomics.
[9] Jianbing Yan,et al. Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights , 2014, Nature Communications.
[10] Yvan Saeys,et al. Systematic Structural Characterization of Metabolites in Arabidopsis via Candidate Substrate-Product Pair Networks[C][W] , 2014, Plant Cell.
[11] Hideyuki Suzuki,et al. Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts1[W][OPEN] , 2014, Plant Physiology.
[12] Mark H. Wright,et al. Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs , 2014, Proceedings of the National Academy of Sciences.
[13] M. Fitzgerald,et al. Diversity of Global Rice Markets and the Science Required for Consumer-Targeted Rice Breeding , 2014, PloS one.
[14] Tetsuya Mori,et al. Toward better annotation in plant metabolomics: isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses , 2013, Metabolomics.
[15] Kazuki Saito,et al. Toward better annotation in plant metabolomics: isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses , 2013, Metabolomics.
[16] Cai-guo Xu,et al. Genetic analysis of the metabolome exemplified using a rice population , 2013, Proceedings of the National Academy of Sciences.
[17] C. Delatorre,et al. Stress-Induced Cytokinin Synthesis Increases Drought Tolerance through the Coordinated Regulation of Carbon and Nitrogen Assimilation in Rice1[C][W][OPEN] , 2013, Plant Physiology.
[18] Zhikang Li,et al. Temporal profiling of primary metabolites under chilling stress and its association with seedling chilling tolerance of rice (Oryza sativa L.) , 2013, Rice.
[19] Oliver Fiehn,et al. LipidBlast - in-silico tandem mass spectrometry database for lipid identification , 2013, Nature Methods.
[20] D. Hincha,et al. Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling , 2013, PloS one.
[21] Bifeng Yuan,et al. A selective pretreatment method for determination of endogenous active brassinosteroids in plant tissues: double layered solid phase extraction combined with boronate affinity polymer monolith microextraction , 2013, Plant Methods.
[22] J. Sheen,et al. Glucose–TOR signalling reprograms the transcriptome and activates meristems , 2013, Nature.
[23] Kazuki Saito,et al. Metabolomics for unknown plant metabolites , 2013, Analytical and Bioanalytical Chemistry.
[24] M. Hirai,et al. A new class of plant lipid is essential for protection against phosphorus depletion , 2013, Nature Communications.
[25] M. Schmid,et al. Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana , 2013, Science.
[26] R. Peters,et al. The Role of Momilactones in Rice Allelopathy , 2013, Journal of Chemical Ecology.
[27] M. Hirai,et al. Combination of liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs. , 2013, Analytical chemistry.
[28] K. Akiyama,et al. Confirming Stereochemical Structures of Strigolactones Produced by Rice and Tobacco , 2012, Molecular plant.
[29] S. Wongpornchai,et al. Quantification of flavonoids in black rice by liquid chromatography-negative electrospray ionization tandem mass spectrometry. , 2012, Journal of agricultural and food chemistry.
[30] Yutaka Yamada,et al. RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database. , 2012, Phytochemistry.
[31] K. H. Laursen,et al. A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties , 2012, Metabolomics.
[32] Ralf Tautenhahn,et al. An accelerated workflow for untargeted metabolomics using the METLIN database , 2012, Nature Biotechnology.
[33] Xu-dong Zhu,et al. The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway. , 2012, The Plant journal : for cell and molecular biology.
[34] Kazunori Okada,et al. The potential bioproduction of the pharmaceutical agent sakuranetin, a flavonoid phytoalexin in rice , 2012, Bioengineered.
[35] Min Shi,et al. Identification of quantitative trait Loci for lipid metabolism in rice seeds. , 2012, Molecular plant.
[36] Kazuki Saito,et al. Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. , 2012, The Plant journal : for cell and molecular biology.
[37] Andrew D Hanson,et al. Frontiers in metabolic reconstruction and modeling of plant genomes. , 2012, Journal of experimental botany.
[38] Kazuki Saito,et al. Deciphering starch quality of rice kernels using metabolite profiling and pedigree network analysis. , 2012, Molecular plant.
[39] Jie Chen,et al. Determination of flavor components of rice bran by GC-MS and chemometrics , 2012 .
[40] M. Stitt,et al. Genomic and metabolic prediction of complex heterotic traits in hybrid maize , 2012, Nature Genetics.
[41] C. Bachem,et al. Untargeted Metabolic Quantitative Trait Loci Analyses Reveal a Relationship between Primary Metabolism and Potato Tuber Quality1[W][OA] , 2012, Plant Physiology.
[42] Akira Oikawa,et al. Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics , 2011, BMC Systems Biology.
[43] Magali Schnell Ramos,et al. Toward the Storage Metabolome: Profiling the Barley Vacuole1[W][OA] , 2011, Plant Physiology.
[44] Yozo Okazaki,et al. Recent advances of metabolomics in plant biotechnology , 2011, Plant Biotechnology Reports.
[45] Kazuki Saito,et al. Exploring matrix effects and quantification performance in metabolomics experiments using artificial biological gradients. , 2011, Analytical chemistry.
[46] Y. Choi,et al. NMR-based plant metabolomics: where do we stand, where do we go? , 2011, Trends in biotechnology.
[47] A. Fukushima,et al. Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice. , 2011, The Plant journal : for cell and molecular biology.
[48] Kazuki Saito,et al. Covering Chemical Diversity of Genetically-Modified Tomatoes Using Metabolomics for Objective Substantial Equivalence Assessment , 2011, PloS one.
[49] Kazuki Saito,et al. Metabolomic approaches toward understanding nitrogen metabolism in plants. , 2011, Journal of experimental botany.
[50] J. K. Kim,et al. Variation and correlation analysis of flavonoids and carotenoids in Korean pigmented rice (Oryza sativa L.) cultivars. , 2010, Journal of agricultural and food chemistry.
[51] Jian-Min Zhou,et al. Tricin—a potential multifunctional nutraceutical , 2010, Phytochemistry Reviews.
[52] M. Hirai,et al. MassBank: a public repository for sharing mass spectral data for life sciences. , 2010, Journal of mass spectrometry : JMS.
[53] Shinjiro Yamaguchi,et al. Contribution of Strigolactones to the Inhibition of Tiller Bud Outgrowth under Phosphate Deficiency in Rice , 2010, Plant & cell physiology.
[54] Matthias Müller-Hannemann,et al. In silico fragmentation for computer assisted identification of metabolite mass spectra , 2010, BMC Bioinformatics.
[55] Kazuki Saito,et al. Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation , 2010, Proceedings of the National Academy of Sciences.
[56] S. Yanagisawa,et al. Metabolome and Photochemical Analysis of Rice Plants Overexpressing Arabidopsis NAD Kinase Gene1[W][OA] , 2010, Plant Physiology.
[57] G. Ren,et al. Antioxidant and alpha-glucosidase inhibitory activity of colored grains in China. , 2010, Journal of agricultural and food chemistry.
[58] N. Tuteja,et al. Polyamines and abiotic stress tolerance in plants , 2010, Plant signaling & behavior.
[59] O. Fiehn,et al. FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry. , 2009, Analytical chemistry.
[60] Xian-Jun Song,et al. The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water , 2009, Nature.
[61] C. Brondani,et al. Microsatellite marker-mediated analysis of the EMBRAPA Rice Core Collection genetic diversity , 2009, Genetica.
[62] M. Matsuoka,et al. Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. , 2009, Plant & cell physiology.
[63] M. Fitzgerald,et al. Not just a grain of rice: the quest for quality. , 2009, Trends in plant science.
[64] A. Mitchell,et al. Influence of cooking on anthocyanins in black rice (Oryza sativa L. japonica var. SBR). , 2009, Journal of agricultural and food chemistry.
[65] J. Delcour,et al. Carotenoids in raw and parboiled brown and milled rice. , 2008, Journal of agricultural and food chemistry.
[66] David S. Wishart,et al. HMDB: a knowledgebase for the human metabolome , 2008, Nucleic Acids Res..
[67] Y. Kamiya,et al. Inhibition of shoot branching by new terpenoid plant hormones , 2008, Nature.
[68] Jingyuan Fu,et al. Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana , 2008, Genome Biology.
[69] Bjarne Gram Hansen,et al. Biochemical Networks and Epistasis Shape the Arabidopsis thaliana Metabolome[W] , 2008, The Plant Cell Online.
[70] J. Selbig,et al. Mode of Inheritance of Primary Metabolic Traits in Tomato[W][OA] , 2008, The Plant Cell Online.
[71] John L Markley,et al. Metabolite identification via the Madison Metabolomics Consortium Database , 2008, Nature Biotechnology.
[72] O. Fiehn,et al. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations , 2007, The Plant journal : for cell and molecular biology.
[73] Z. T. Nehus,et al. Quantification of Vitamin E and γ-Oryzanol Components in Rice Germ and Bran , 2007 .
[74] Kazuki Saito,et al. Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
[75] Fabrice Davrieux,et al. Rapid discrimination of scented rice by solid-phase microextraction, mass spectrometry, and multivariate analysis used as a mass sensor. , 2007, Journal of agricultural and food chemistry.
[76] S. Seo,et al. Contribution of Ethylene Biosynthesis for Resistance to Blast Fungus Infection in Young Rice Plants1[OA] , 2006, Plant Physiology.
[77] K. Akiyama,et al. Strigolactones: chemical signals for fungal symbionts and parasitic weeds in plant roots. , 2006, Annals of botany.
[78] J. Young,et al. Anthocyanin composition in black, blue, pink, purple, and red cereal grains. , 2006, Journal of agricultural and food chemistry.
[79] U. Roessner,et al. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement , 2006, Nature Biotechnology.
[80] Wei Zhao,et al. Gramene: a bird's eye view of cereal genomes , 2005, Nucleic Acids Res..
[81] M. Kawase,et al. Development of an RFLP-based Rice Diversity Research Set of Germplasm , 2005 .
[82] V. Ghole,et al. Molecular characterization of marker-free transgenic lines of indica rice that accumulate carotenoids in seed endosperm , 2005, Molecular Genetics and Genomics.
[83] E. Hinchliffe,et al. Improving the nutritional value of Golden Rice through increased pro-vitamin A content , 2005, Nature Biotechnology.
[84] H. Ohta,et al. Three Enzyme Systems for Galactoglycerolipid Biosynthesis Are Coordinately Regulated in Plants* , 2005, Journal of Biological Chemistry.
[85] Christoph Steinbeck,et al. NMRShiftDB -- compound identification and structure elucidation support through a free community-built web database. , 2004, Phytochemistry.
[86] Masaru Tomita,et al. Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. , 2004, The Plant journal : for cell and molecular biology.
[87] Kozo Nakamura,et al. Analysis of phenolic compounds in white rice, brown rice, and germinated brown rice. , 2004, Journal of agricultural and food chemistry.
[88] J. Hyun,et al. Cyanidin and Malvidin from Oryza sativa cv. Heugjinjubyeo mediate cytotoxicity against human monocytic leukemia cells by arrest of G(2)/M phase and induction of apoptosis. , 2004, Journal of agricultural and food chemistry.
[89] J. G. Wu,et al. Methods of developing core collections based on the predicted genotypic value of rice (Oryza sativa L.) , 2004, Theoretical and Applied Genetics.
[90] Y. Hayata,et al. Variation of 2-Acetyl-1-Pyrroline Concentration in Aromatic Rice Grains Collected in the Same Region in Japan and Factors Affecting Its Concentration , 2004 .
[91] T. Badger,et al. Characterization of triterpene alcohol and sterol ferulates in rice bran using LC-MS/MS. , 2003, Journal of agricultural and food chemistry.
[92] Richard A Dixon,et al. Phytochemistry meets genome analysis, and beyond. , 2003, Phytochemistry.
[93] C. Vance,et al. Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource. , 2003, The New phytologist.
[94] P. Schieberle,et al. Comparison of key aroma compounds in cooked brown rice varieties based on aroma extract dilution analyses. , 2002, Journal of agricultural and food chemistry.
[95] H. Chung,et al. A quinolone alkaloid with antioxidant activity from the aleurone layer of anthocyanin-pigmented rice. , 2001, Journal of natural products.
[96] Zhimin Xu,et al. Antioxidant activity of tocopherols, tocotrienols, and gamma-oryzanol components from rice bran against cholesterol oxidation accelerated by 2,2'-azobis(2-methylpropionamidine) dihydrochloride. , 2001, Journal of agricultural and food chemistry.
[97] C. Benning,et al. DGD1-independent biosynthesis of extraplastidic galactolipids after phosphate deprivation in Arabidopsis. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[98] M. Matsuoka,et al. Loss of Function of a Rice brassinosteroid insensitive1 Homolog Prevents Internode Elongation and Bending of the Lamina Joint , 2000, Plant Cell.
[99] T. Akihisa,et al. Triterpene alcohol and sterol ferulates from rice bran and their anti-inflammatory effects. , 2000, Journal of agricultural and food chemistry.
[100] P. Beyer,et al. Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. , 2000, Science.
[101] K. Feldmann,et al. Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids. , 1999, Plant physiology.
[102] C. Kao,et al. Excess copper induces an accumulation of putrescine in rice leaves , 1999 .
[103] Z. Xu,et al. Purification and identification of components of gamma-oryzanol in rice bran Oil. , 1999, Journal of agricultural and food chemistry.
[104] E. M. Faergestad,et al. Grain Development Mutants of Barley ([alpha]-Amylase Production during Grain Maturation and Its Relation to Endogenous Gibberellic Acid Content) , 1997, Plant physiology.
[105] M. Wootton,et al. Changes in Volatile Components of Paddy, Brown and White Fragrant Rice During Storage , 1996 .
[106] N. Terahara,et al. Composition of Anthocyanin Pigments in Aromatic Red Rice and its Wine , 1994 .
[107] H. Kato,et al. Oryzalexin E, A diterpene phytoalexin from UV-irradiated rice leaves , 1993 .
[108] O. Kodama,et al. Novel Phytoalexins (Oryzalexins A, B and C) Isolated from Rice Blast Leaves Infected with Pyricularia oryzae. Part I: Isolation, Characterization and Biological Activities of Oryzalexins , 1985 .
[109] O. Kodama,et al. Novel Phytoalexins (Oryzalexins A, B and C) Isolated from Rice Blast Leaves Infected with Pyricularia oryzae. , 1985 .
[110] J. Maga. Rice product volatiles: a review , 1984 .
[111] E. Grill,et al. Exploring the Arabidopsis sulfur metabolome. , 2014, The Plant journal : for cell and molecular biology.
[112] Robert D Hall,et al. Solid phase micro-extraction GC-MS analysis of natural volatile components in melon and rice. , 2012, Methods in molecular biology.
[113] E. Berghofer,et al. Physicochemical and antioxidative properties of red and black rice varieties from Thailand, China and Sri Lanka , 2011 .
[114] A. Fukushima,et al. Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism. , 2010, Molecular plant.
[115] A. Fernie,et al. Metabolomics-assisted breeding: a viable option for crop improvement? , 2009, Trends in genetics : TIG.
[116] Jin-Chul Shin,et al. Characterization of antioxidant alkaloids and phenolic acids from anthocyanin-pigmented rice (Oryza sativa cv. Heugjinjubyeo) , 2007 .
[117] J. Kopka,et al. Comparative Metabolome Analysis of the Salt Response in Breeding Cultivars of Rice , 2007 .
[118] Robert Yawadio,et al. Identification of phenolic compounds isolated from pigmented rices and their aldose reductase inhibitory activities , 2007 .
[119] Z. T. Nehus,et al. Quantification of vitamin E and gamma-oryzanol components in rice germ and bran. , 2007, Journal of agricultural and food chemistry.
[120] K. L. Heong,et al. Rice is life: scientific perspectives for the 21st century. Proceedings of the World Rice Research Conference held in Tsukuba, Japan, 4-7 November 2004. , 2005 .
[121] N. Allan. Concepts and controversy , 1997 .
[122] S. Kiyosawa,et al. Sakuranetin, a flavanone phytoalexin from ultraviolet-irradiated rice leaves , 1992 .
[123] R. Buttery. 2-Acetyl-1-pyrroline : An important aroma component of cooked rice , 1982 .