Cloning and characterization of a new ribitol dehydrogenase from Providencia alcalifaciens RIMD 1656011.

BACKGROUND A new ribitol dehydrogenase gene was cloned from Providencia alcalifaciens RIMD 1656011 and expressed in Escherichia coli BL21. This study aimed to purify and characterize the ribitol dehydrogenase from P. alcalifaciens RIMD 1656011 and investigate its substrate specificity for potential use as an industrial enzyme. RESULTS The protein was purified by nickel affinity chromatography. The molecular mass of the purified enzyme was determined as ∼25 000 and 26 650 Da through sodium dodecyl sulfate polyacrylamide gel electrophoresis and liquid chromatography/mass spectrometry respectively. The result for native molecular mass (104 kDa) suggested that the enzyme functions as a tetramer. Optimum activity of the enzyme was determined at pH 10.0 and a temperature of 35 °C. Regarding its thermal stability, the enzyme retained 72, 72, 48 and 0% of its initial activity after 4 h at 25, 30, 40 and 50 °C respectively. The Km , kcat and kcat /Km values of the enzyme for the substrate ribitol were determined as 13.9 mmol L(-1) , 10.0 s(-1) and 0.71 L mmol(-1) s(-1) respectively. The Km of NAD(+) was 0.042 mmol L(-1) . CONCLUSION The substrate specificity indicated that the ribitol dehydrogenase from P. alcalifaciens RIMD 1656011 can be used for direct production of allitol from d-fructose without any by-product formation. © 2015 Society of Chemical Industry.

[1]  In-Won Kim,et al.  An efficient ribitol-specific dehydrogenase from Enterobacter aerogenes. , 2015, Enzyme and microbial technology.

[2]  Yueming Zhu,et al.  Production of allitol from D‐psicose by a novel isolated strain of Klebsiella oxytoca G4A4 , 2014, Journal of basic microbiology.

[3]  B. Lazzaro,et al.  Comparative pathology of bacteria in the genus Providencia to a natural host, Drosophila melanogaster. , 2011, Microbes and infection.

[4]  M. Jeya,et al.  Cloning and characterization of a ribitol dehydrogenase from Zymomonas mobilis , 2010, Applied Microbiology and Biotechnology.

[5]  S. Ito Features and applications of microbial sugar epimerases , 2009, Applied Microbiology and Biotechnology.

[6]  K. Morimoto,et al.  Novel substrate specificity of D-arabinose isomerase from Klebsiella pneumoniae and its application to production of D-altrose from D-psicose. , 2006, Journal of bioscience and bioengineering.

[7]  K. Izumori Bioproduction strategies for rare hexose sugars , 2002, Naturwissenschaften.

[8]  K. Matsushita,et al.  Membrane-bound Sugar Alcohol Dehydrogenase in Acetic Acid Bacteria catalyzes L-Ribulose Formation and NAD-Dependent Ribitol Dehydrogenase is Independent of the Oxidative Fermentation , 2001, Bioscience, biotechnology, and biochemistry.

[9]  J. Miller,et al.  Classification, Identification, and Clinical Significance of Proteus, Providencia, and Morganella , 2000, Clinical Microbiology Reviews.

[10]  Y. Ishida,et al.  Direct production of allitol from D-fructose by a coupling reaction using D-tagatose 3-epimerase, ribitol dehydrogenase and formate dehydrogenase. , 2000, Journal of bioscience and bioengineering.

[11]  R. Ward,et al.  The Amino Acid Sequence of Ribitol Dehydrogenase-F, a Mutant Enzyme with Improved Xylitol Dehydrogenase Activity , 1999, Journal of protein chemistry.

[12]  K. Izumori,et al.  Purification and characterization of a ribitol dehydrogenase from Enterobacter agglomerans strain 221e , 1995 .

[13]  M. Albert,et al.  Pathogenesis of Providencia alcalifaciens-induced diarrhea , 1992, Infection and immunity.

[14]  F. Giffhorn,et al.  Pentitol metabolism of Rhodobacter sphaeroides Si4: purification and characterization of a ribitol dehydrogenase. , 1992, Journal of general microbiology.

[15]  P. Hawkey,et al.  Providencia alcalifaciens and travellers' diarrhoea. , 1989, BMJ.

[16]  M. Starr Edwards and Ewing's Identification of Enterobacteriaceae.: Fourth Edition. By William H. Ewing. Elsevier Science Publishing Co., Inc., New York. 1986. 536 pages. $65.00. ISBN 0-444-00981-7. , 1986 .

[17]  W. Ewing,et al.  Edwards and Ewing's Identification of Enterobacteriaceae , 1986 .

[18]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[19]  S. Taylor,et al.  Ribitol dehydrogenase from Klebsiella aerogenes. Purification and subunit structure. , 1974, The Biochemical journal.

[20]  W. Wood,et al.  [35] Pentitol dehydrogenases of Aerobacter aerogenes , 1966 .

[21]  R. Sen Isolation of strains of the Providence group from cases with diarrhoea in Ibadan, Nigeria, West Africa. , 1962, The Indian journal of medical research.

[22]  J. Singer,et al.  Biochemical investigation of Providence strains and their relationship to the Proteus group , 1954, Journal of Hygiene.