Metabolic and proteomic alteration in phytohormone-producing endophytic Bacillus amyloliquefaciens RWL-1 during methanol utilization

[1]  In-Jung Lee,et al.  Inoculation of abscisic acid-producing endophytic bacteria enhances salinity stress tolerance in Oryza sativa , 2017 .

[2]  In-Jung Lee,et al.  Plant growth-promoting endophytic bacteria versus pathogenic infections: an example of Bacillus amyloliquefaciens RWL-1 and Fusarium oxysporum f. sp. lycopersici in tomato , 2017, PeerJ.

[3]  A. Tani,et al.  Cultivable Methylobacterium species diversity in rice seeds identified with whole-cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis. , 2017, Journal of bioscience and bioengineering.

[4]  In-Jung Lee,et al.  Paenibacillus terrae AY-38 resistance against Botrytis cinerea in Solanum lycopersicum L. plants through defence hormones regulation , 2017 .

[5]  T. Sa,et al.  Control of Wilt and Rot Pathogens of Tomato by Antagonistic Pink Pigmented Facultative Methylotrophic Delftia lacustris and Bacillus spp. , 2016, Front. Plant Sci..

[6]  In-Jung Lee,et al.  Seed-borne endophytic Bacillus amyloliquefaciens RWL-1 produces gibberellins and regulates endogenous phytohormones of Oryza sativa. , 2016, Plant physiology and biochemistry : PPB.

[7]  In-Jung Lee,et al.  Regulations of essential amino acids and proteomics of bacterial endophytes Sphingomonas sp. Lk11 during cadmium uptake , 2016, Environmental toxicology.

[8]  Manish Kumar,et al.  Methylotrophic bacteria in sustainable agriculture , 2016, World journal of microbiology & biotechnology.

[9]  Haeyoung Jeong,et al.  Deciphering the conserved genetic loci implicated in plant disease control through comparative genomics of Bacillus amyloliquefaciens subsp. plantarum , 2015, Front. Plant Sci..

[10]  N. Tyagi,et al.  DNA interaction, SOD, peroxidase and nuclease activity studies of iron complex having ligand with carboxamido nitrogen donors. , 2015, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[11]  E. Papoutsakis,et al.  Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization. , 2015, Current opinion in biotechnology.

[12]  B. Glick,et al.  Isolation and characterization of endophytic plant growth-promoting bacteria from date palm tree (Phoenix dactylifera L.) and their potential role in salinity tolerance , 2015, Antonie van Leeuwenhoek.

[13]  H. Balaram,et al.  Prediction of substrate specificity and preliminary kinetic characterization of the hypothetical protein PVX_123945 from Plasmodium vivax. , 2015, Experimental parasitology.

[14]  W. L. Araújo,et al.  Biotechnological and Agronomic Potential of Endophytic Pink-Pigmented Methylotrophic Methylobacterium spp. , 2015, BioMed research international.

[15]  David A. C. Beck,et al.  Genomics of Methylotrophy in Gram-Positive Methylamine-Utilizing Bacteria , 2015, Microorganisms.

[16]  J. Kalinowski,et al.  Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape , 2015, BMC Genomics.

[17]  N. Weyens,et al.  Bacterial seed endophytes: genera, vertical transmission and interaction with plants , 2015 .

[18]  In-Jung Lee,et al.  Endophytic fungi: resource for gibberellins and crop abiotic stress resistance , 2015, Critical reviews in biotechnology.

[19]  In-Jung Lee,et al.  Endophytic bacteria (Sphingomonas sp. LK11) and gibberellin can improve Solanum lycopersicum growth and oxidative stress under salinity , 2015 .

[20]  M. Hecker,et al.  A proteomic view of cell physiology of the industrial workhorse Bacillus licheniformis. , 2014, Journal of biotechnology.

[21]  Haeyoung Jeong,et al.  Genome Sequence of Bacillus amyloliquefaciens GB03, an Active Ingredient of the First Commercial Biological Control Product , 2014, Genome Announcements.

[22]  J. Kalinowski,et al.  Complete genome sequence of Bacillus methanolicus MGA3, a thermotolerant amino acid producing methylotroph. , 2014, Journal of biotechnology.

[23]  F. Trognitz,et al.  Metabolic potential of endophytic bacteria , 2014, Current opinion in biotechnology.

[24]  Jonas Grossmann,et al.  Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3 , 2014, Proteomics.

[25]  J. Lugtenberg Biotechnological Applications of Bacterial Endophytes , 2014 .

[26]  A. Oliver,et al.  A trade-off between oxidative stress resistance and DNA repair plays a role in the evolution of elevated mutation rates in bacteria , 2013, Proceedings of the Royal Society B: Biological Sciences.

[27]  E. Bremer,et al.  Osmoprotection of Bacillus subtilis through Import and Proteolysis of Proline-Containing Peptides , 2012, Applied and Environmental Microbiology.

[28]  J. Aguilar,et al.  Secretion of the housekeeping protein glyceraldehyde-3-phosphate dehydrogenase by the LEE-encoded type III secretion system in enteropathogenic Escherichia coli. , 2012, The international journal of biochemistry & cell biology.

[29]  Trond E. Ellingsen,et al.  Genome Sequence of Thermotolerant Bacillus methanolicus: Features and Regulation Related to Methylotrophy and Production of l-Lysine and l-Glutamate from Methanol , 2012, Applied and Environmental Microbiology.

[30]  M. Akita,et al.  Practical Application of Methanol-Mediated Mutualistic Symbiosis between Methylobacterium Species and a Roof Greening Moss, Racomitrium japonicum , 2012, PloS one.

[31]  A. Saxena,et al.  Epiphytic pink-pigmented methylotrophic bacteria enhance germination and seedling growth of wheat (Triticum aestivum) by producing phytohormone , 2011, Antonie van Leeuwenhoek.

[32]  M. Abo,et al.  Salt Stress-Induced Changes in the Transcriptome, Compatible Solutes, and Membrane Lipids in the Facultatively Phototrophic Bacterium Rhodobacter sphaeroides , 2011, Applied and Environmental Microbiology.

[33]  M. Lidstrom,et al.  XoxF Is Required for Expression of Methanol Dehydrogenase in Methylobacterium extorquens AM1 , 2011, Journal of bacteriology.

[34]  Ü. Niinemets,et al.  Can the capacity for isoprene emission acclimate to environmental modifications during autumn senescence in temperate deciduous tree species Populus tremula? , 2011, Journal of Plant Research.

[35]  S. Schauer,et al.  A novel growth-promoting microbe, Methylobacterium funariae sp. nov., isolated from the leaf surface of a common moss , 2011, Plant signaling & behavior.

[36]  Wanzhi. Wei,et al.  Bioremediation of heavy metals by growing hyperaccumulaor endophytic bacterium Bacillus sp. L14. , 2010, Bioresource technology.

[37]  M. Madhaiyan,et al.  Bacillus methylotrophicus sp. nov., a methanol-utilizing, plant-growth-promoting bacterium isolated from rice rhizosphere soil. , 2010, International journal of systematic and evolutionary microbiology.

[38]  G. Fuchs,et al.  Methanol Assimilation in Methylobacterium extorquens AM1: Demonstration of All Enzymes and Their Regulation , 2010, PloS one.

[39]  H. Freitas,et al.  Endophytic bacteria and their potential to enhance heavy metal phytoextraction. , 2009, Chemosphere.

[40]  L. Baldomà,et al.  NAD+-dependent post-translational modification of Escherichia coli glyceraldehyde-3-phosphate dehydrogenase. , 2009, International microbiology : the official journal of the Spanish Society for Microbiology.

[41]  B. Sánchez,et al.  Identification of novel proteins secreted by Lactobacillus rhamnosus GG grown in de Mann‐Rogosa‐Sharpe broth , 2009, Letters in applied microbiology.

[42]  Amber Bible,et al.  Alkyl hydroperoxide reductase has a role in oxidative stress resistance and in modulating changes in cell-surface properties in Azospirillum brasilense Sp245. , 2009, Microbiology.

[43]  M. V. Filho,et al.  Methanol-based industrial biotechnology: current status and future perspectives of methylotrophic bacteria. , 2009, Trends in biotechnology.

[44]  I. Baldwin,et al.  Native Bacterial Endophytes Promote Host Growth in a Species-Specific Manner; Phytohormone Manipulations Do Not Result in Common Growth Responses , 2008, PloS one.

[45]  A. Horii,et al.  Cell surface Lactobacillus plantarum LA 318 glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) adheres to human colonic mucin , 2008, Journal of applied microbiology.

[46]  J. Dominy,et al.  Synthesis of Amino Acid Cofactor in Cysteine Dioxygenase Is Regulated by Substrate and Represents a Novel Post-translational Regulation of Activity* , 2008, Journal of Biological Chemistry.

[47]  P. Piccoli,et al.  Azospirillum brasilense Sp 245 produces ABA in chemically-defined culture medium and increases ABA content in arabidopsis plants , 2008, Plant Growth Regulation.

[48]  B. Morgenstern,et al.  Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42 , 2007, Nature Biotechnology.

[49]  M. M. Christ,et al.  Simultaneous growth and emission measurements demonstrate an interactive control of methanol release by leaf expansion and stomata. , 2007, Journal of experimental botany.

[50]  L. Rohlin,et al.  Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. , 2007, Journal of proteome research.

[51]  W. Schwab,et al.  Molecular interaction between Methylobacterium extorquens and seedlings: growth promotion, methanol consumption, and localization of the methanol emission site. , 2006, Journal of experimental botany.

[52]  J. Vorholt,et al.  A proteomic study of Methylobacterium extorquens reveals a response regulator essential for epiphytic growth , 2006, Proceedings of the National Academy of Sciences.

[53]  M. Madhaiyan,et al.  Plant Growth–Promoting Methylobacterium Induces Defense Responses in Groundnut (Arachis hypogaea L.) Compared with Rot Pathogens , 2006, Current Microbiology.

[54]  A. McEwan,et al.  Defenses against Oxidative Stress in Neisseria gonorrhoeae: a System Tailored for a Challenging Environment , 2006, Microbiology and Molecular Biology Reviews.

[55]  M. Madhaiyan,et al.  Physiological enhancement of early growth of rice seedlings (Oryza sativa L.) by production of phytohormone of N2-fixing methylotrophic isolates , 2006, Biology and Fertility of Soils.

[56]  J. Vorholt,et al.  Methylotrophic Metabolism Is Advantageous for Methylobacterium extorquens during Colonization of Medicago truncatula under Competitive Conditions , 2005, Applied and Environmental Microbiology.

[57]  K. Salmon,et al.  DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates , 2005, Molecular Genetics and Genomics.

[58]  M. Madhaiyan,et al.  Growth Promotion and Induction of Systemic Resistance in Rice Cultivar Co-47 (Oryza sativa L.) by Methylobacterium spp. , 2004 .

[59]  J. Schnoor,et al.  Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoides x nigra DN34). , 2004, International journal of systematic and evolutionary microbiology.

[60]  H. Pospiech,et al.  Bud endophytes of Scots pine produce adenine derivatives and other compounds that affect morphology and mitigate browning of callus cultures. , 2004, Physiologia plantarum.

[61]  O. Reva,et al.  Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis. , 2004, FEMS microbiology ecology.

[62]  Michael Hecker,et al.  A proteomic view of cell physiology of Bacillus licheniformis , 2004, Proteomics.

[63]  Z. Omer,et al.  Indole-3-acetic acid production by pink-pigmented facultative methylotrophic bacteria , 2004, Plant Growth Regulation.

[64]  A. Lapidus,et al.  Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View , 2003, Journal of bacteriology.

[65]  I. Galbally,et al.  The Production of Methanol by Flowering Plants and the Global Cycle of Methanol , 2002 .

[66]  V. DelVecchio,et al.  Global analysis of the Brucella melitensis proteome: Identification of proteins expressed in laboratory‐grown culture , 2002, Proteomics.

[67]  T. Richter,et al.  Extracellular phytase activity of Bacillus amyloliquefaciens FZB45 contributes to its plant-growth-promoting effect. , 2002, Microbiology.

[68]  L. Hood,et al.  Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae*S , 2002, Molecular & Cellular Proteomics.

[69]  R. O. Morris,et al.  tRNA Is the Source of Low-Level trans-Zeatin Production in Methylobacterium spp , 2002, Journal of bacteriology.

[70]  Y. Trotsenko,et al.  Aerobic Methylobacteria Are Capable of Synthesizing Auxins , 2001, Microbiology.

[71]  F W Oehme,et al.  Microbial resistance to metals in the environment. , 2000, Ecotoxicology and environmental safety.

[72]  E. Cabiscol,et al.  Oxidative stress in bacteria and protein damage by reactive oxygen species. , 2000, International microbiology : the official journal of the Spanish Society for Microbiology.

[73]  J. Moult,et al.  Biological function made crystal clear - annotation of hypothetical proteins via structural genomics. , 2000, Current opinion in biotechnology.

[74]  J. Murrell,et al.  Microbial metabolism of methanesulfonic acid , 1999, Archives of Microbiology.

[75]  S. Gygi,et al.  Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.

[76]  P. Lund,et al.  Mutations in dsbA and dsbB, but not dsbC, lead to an enhanced sensitivity of Escherichia coli to Hg2+ and Cd2+. , 1999, FEMS microbiology letters.

[77]  M. Lidstrom,et al.  C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea. , 1998, Science.

[78]  Lei Chen,et al.  Alkyl hydroperoxide reductase subunit C (AhpC) protects bacterial and human cells against reactive nitrogen intermediates. , 1998, Molecular cell.

[79]  J. Murrell,et al.  The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs , 1997, Applied and environmental microbiology.

[80]  R. Fall,et al.  Methanol Emission from Leaves (Enzymatic Detection of Gas-Phase Methanol and Relation of Methanol Fluxes to Stomatal Conductance and Leaf Development) , 1995, Plant physiology.

[81]  M. Jebbar,et al.  Osmoadaptation in rhizobia: ectoine-induced salt tolerance , 1994, Journal of bacteriology.

[82]  B. Siddhardha,et al.  Plant Growth Promoting Activity of Pink Pigmented Facultative Methylotroph - Methylobacterium extorquens MM2 on Lycopersicon esculentum L. - , 2017 .

[83]  H. Morisaki,et al.  Endophytic bacteria in the rice plant. , 2008, Microbes and environments.

[84]  L. Baldomà,et al.  Role of secreted glyceraldehyde-3-phosphate dehydrogenase in the infection mechanism of enterohemorrhagic and enteropathogenic Escherichia coli: interaction of the extracellular enzyme with human plasminogen and fibrinogen. , 2007, The international journal of biochemistry & cell biology.

[85]  G. S. Chhatwal,et al.  Housekeeping enzymes as virulence factors for pathogens. , 2003, International journal of medical microbiology : IJMM.

[86]  J. Hall Cellular mechanisms for heavy metal detoxification and tolerance. , 2002, Journal of experimental botany.

[87]  S. Kim,et al.  Properties of electron carriers in the process of methanol oxidation in a new restricted facultative marine methylotrophic bacterium, Methylophaga sp. MP , 2002 .

[88]  M. Maurizi Biochemical Properties and Biological Functions of Atp-Dependent Proteases In Bacterial Cells , 1998 .