Characterization of Early Microbial Communities on Volcanic Deposits along a Vegetation Gradient on the Island of Miyake, Japan
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M. Hattori | H. Ohta | K. Narisawa | K. Oshima | W. Suda | Seok-Won Kim | Yong Guo | Yoshinori Sato | T. Kamijo | Reiko Fujimura
[1] M. Hattori,et al. Robustness of Gut Microbiota of Healthy Adults in Response to Probiotic Intervention Revealed by High-Throughput Pyrosequencing , 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.
[2] J. Bradeen,et al. Effects of plant host species and plant community richness on streptomycete community structure. , 2013, FEMS microbiology ecology.
[3] J. Bever,et al. Microbial population and community dynamics on plant roots and their feedbacks on plant communities. , 2012, Annual review of microbiology.
[4] Robert C. Edgar,et al. Defining the core Arabidopsis thaliana root microbiome , 2012, Nature.
[5] M. Schloter,et al. Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing , 2012, FEMS microbiology ecology.
[6] B. Frey,et al. Bacterial, Archaeal and Fungal Succession in the Forefield of a Receding Glacier , 2011, Microbial Ecology.
[7] Antonio Gonzalez,et al. Bacterial community structure and function change in association with colonizer plants during early primary succession in a glacier forefield , 2012 .
[8] M. Hattori,et al. Analysis of Early Bacterial Communities on Volcanic Deposits on the Island of Miyake (Miyake-jima), Japan: a 6-year Study at a Fixed Site , 2011, Microbes and environments.
[9] M. Schloter,et al. Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield , 2011, The ISME Journal.
[10] Patrick D. Schloss,et al. Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis , 2011, Applied and Environmental Microbiology.
[11] B. Haas,et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. , 2011, Genome research.
[12] Susan M. Huse,et al. Ironing out the wrinkles in the rare biosphere through improved OTU clustering , 2010, Environmental microbiology.
[13] D. Burslem,et al. The influence of vegetation type, soil properties and precipitation on the composition of soil mite and microbial communities at the landscape scale , 2010 .
[14] Paul G Dennis,et al. Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities? , 2010, FEMS microbiology ecology.
[15] R. Knight,et al. Soil bacterial and fungal communities across a pH gradient in an arable soil , 2010, The ISME Journal.
[16] H. Ohta,et al. Nitrogenase activity (acetylene reduction) of an iron-oxidizing leptospirillum strain cultured as a pioneer microbe from a recent volcanic deposit on miyake-jima, Japan. , 2009, Microbes and environments.
[17] Jae-Chang Cho,et al. Distribution patterns of the members of phylum acidobacteria in global soil samples. , 2009, Journal of microbiology and biotechnology.
[18] V. Kunin,et al. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. , 2009, Environmental microbiology.
[19] Ursel M. E. Schütte,et al. Bacterial succession in a glacier foreland of the High Arctic , 2009, The ISME Journal.
[20] D. Hibbett,et al. The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses , 2009, BMC Biology.
[21] R. Knight,et al. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses , 2009, The ISME Journal.
[22] S. Reed,et al. The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils , 2008, Proceedings of the Royal Society B: Biological Sciences.
[23] J. Prosser,et al. Plant host habitat and root exudates shape soil bacterial community structure , 2008, The ISME Journal.
[24] U. Peintner,et al. Ectomycorrhiza of Kobresia myosuroides at a primary successional glacier forefront , 2008, Mycorrhiza.
[25] Zhili Feng,et al. Vegetation cover of forest, shrub and pasture strongly influences soil bacterial community structure as revealed by 16S rRNA gene T-RFLP analysis. , 2008, FEMS microbiology ecology.
[26] Kazunori Shimada,et al. Destruction and Recovery of Vegetation Caused by the 2000-Year Eruption on Miyake-Jima Island, Japan , 2008 .
[27] G. King,et al. Interactions between bacterial carbon monoxide and hydrogen consumption and plant development on recent volcanic deposits , 2008, The ISME Journal.
[28] G. King. Chemolithotrohic Bacteria: Distributions, Functions and Significance in Volcanic Environments , 2007 .
[29] W. Ludwig,et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.
[30] A. Ibekwe,et al. Characterization of developing microbial communities in Mount St. Helens pyroclastic substrate , 2007 .
[31] Y. Hadar,et al. Contrasting patterns of seed and root colonization by bacteria from the genus Chryseobacterium and from the family Oxalobacteraceae , 2007, The ISME Journal.
[32] J. Tiedje,et al. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.
[33] G. King,et al. Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages. , 2007, FEMS microbiology ecology.
[34] J. Rogers,et al. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. , 2006, Mycologia.
[35] Y. Hadar,et al. Succession of Bacterial Communities during Early Plant Development: Transition from Seed to Root and Effect of Compost Amendment , 2006, Applied and Environmental Microbiology.
[36] H. Ohta,et al. Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines. , 2006, International journal of systematic and evolutionary microbiology.
[37] J. Foster,et al. Relaxed Neighbor Joining: A Fast Distance-Based Phylogenetic Tree Construction Method , 2006, Journal of Molecular Evolution.
[38] P. Janssen. Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes , 2006, Applied and Environmental Microbiology.
[39] W. Bowman,et al. A temporal approach to linking aboveground and belowground ecology. , 2005, Trends in ecology & evolution.
[40] J. Ehrenfeld,et al. FEEDBACK IN THE PLANT-SOIL SYSTEM , 2005 .
[41] K. Tamura,et al. Initial Soil Formation Processes of Volcanogenous Regosols (Scoriacious) from Miyake-jima Island, Japan , 2005 .
[42] H. Ohta,et al. Occurrence of hydrogen-oxidizing Ralstonia species as primary microorganisms in the Mt. Pinatubo volcanic mudflow deposits , 2004 .
[43] K. Nara,et al. Underground primary succession of ectomycorrhizal fungi in a volcanic desert on Mount Fuji. , 2003, The New phytologist.
[44] H. Ohta. Quinone profiling of bacterial populations developed in the surface layer of volcanic mudflow deposits from Mt. Pinatubo (the Philippines) , 2003 .
[45] S. Coulson,et al. Community assembly along proglacial chronosequences in the high Arctic: vegetation and soil development in north‐west Svalbard , 2003 .
[46] G. King. Contributions of Atmospheric CO and Hydrogen Uptake to Microbial Dynamics on Recent Hawaiian Volcanic Deposits , 2003, Applied and Environmental Microbiology.
[47] A. Jumpponen. Soil fungal community assembly in a primary successional glacier forefront ecosystem as inferred from rDNA sequence analyses. , 2003, The New phytologist.
[48] H. Higuchi,et al. Monitoring Vegetation Damage Caused by the Year 2000 Miyake Island's Volcanic Eruption Using Satellite Data , 2003 .
[49] P. Vitousek,et al. Nitrogen fixation rates of Stereocaulon vulcani on young Hawaiian lava flows , 2001 .
[50] E. Witter,et al. A rapid method to extract ergosterol from soil by physical disruption , 2001 .
[51] E. Koonin,et al. Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics , 2001, Microbiology and Molecular Biology Reviews.
[52] R. J. Hartin,et al. PCR Primers That Amplify Fungal rRNA Genes from Environmental Samples , 2000, Applied and Environmental Microbiology.
[53] H. Heuer,et al. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients , 1997, Applied and environmental microbiology.
[54] J. Tiedje,et al. DNA recovery from soils of diverse composition , 1996, Applied and environmental microbiology.
[55] James P. Martin. USE OF ACID, ROSE BENGAL, AND STREPTOMYCIN IN THE PLATE METHOD FOR ESTIMATING SOIL FUNGI , 1950 .
[56] S. Yoshitake,et al. Successional changes in the soil microbial community along a vegetation development sequence in a subalpine volcanic desert on Mount Fuji, Japan , 2012, Plant and Soil.
[57] H. Ohta,et al. Relationships between Fungal Biomass and Nitrous Oxide Emission in Upland Rice Soils under No Tillage and Cover Cropping Systems. , 2008, Microbes and environments.
[58] H. Ohta,et al. Characterization of herbaspirillum- and limnobacter-related strains isolated from young volcanic deposits in miyake-jima island, Japan. , 2008, Microbes and environments.
[59] H. Ohta,et al. Archaeal Diversity of Upland Rice Field Soils Assessed by the Terminal Restriction Fragment Length Polymorphism Method Combined with Real Time Quantitative-PCR and a Clone Library Analysis. , 2008, Microbes and environments.
[60] H. Ohta,et al. Atmospheric CO and hydrogen uptake and CO oxidizer phylogeny for miyake-jima, Japan volcanic deposits. , 2008, Microbes and environments.
[61] S. P. Anderson,et al. Microbial Community Succession in an Unvegetated, Recently Deglaciated Soil , 2006, Microbial Ecology.
[62] T. Kamijo. Island ecosystem and vegetation dynamics before and after the 2000-year Eruption on Miyake-jima Island, Japan with implications for conservation of island's ecosystem , 2003 .
[63] O. Hiroyuki,et al. Oligotrophic bacteria on organic debris and plant roots in a paddy field soil , 1983 .