Comparing de novo assemblers for 454 transcriptome data
暂无分享,去创建一个
[1] Inanç Birol,et al. De novo transcriptome assembly with ABySS , 2009, Bioinform..
[2] D. Guo,et al. Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing , 2009, BMC Genomics.
[3] Tony Hunter,et al. Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration , 2009, BMC Biology.
[4] J. Ohlrogge,et al. Sampling the Arabidopsis Transcriptome with Massively Parallel Pyrosequencing1[W][OA] , 2007, Plant Physiology.
[5] J. Marden,et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing , 2008, Molecular ecology.
[6] Johan A. Grahnen,et al. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery , 2010, BMC Genomics.
[7] Transcript Profiling by 3′-Untranslated Region Sequencing Resolves Expression of Gene Families1[W][OA] , 2007, Plant Physiology.
[8] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[9] J. Feder,et al. Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella , 2009, BMC Genomics.
[10] Yi Zhang,et al. Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection , 2009, BMC Plant Biology.
[11] Shaun D Jackman,et al. Assembling genomes using short-read sequencing technology , 2010, Genome Biology.
[12] R. ffrench-Constant,et al. Pyrosequencing of the midgut transcriptome of the poplar leaf beetle Chrysomela tremulae reveals new gene families in Coleoptera. , 2009, Insect biochemistry and molecular biology.
[13] Paul D. Shaw,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[14] Alexie Papanicolaou,et al. Next generation transcriptomes for next generation genomes using est2assembly , 2009, BMC Bioinformatics.
[15] B. Roe,et al. A Database of Expressed Genes From Cochliomyia hominivorax (Diptera: Calliphoridae) , 2009, Journal of medical entomology.
[16] C. Schlötterer,et al. Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling , 2009, PloS one.
[17] R. ffrench-Constant,et al. Pyrosequencing the Manduca sexta larval midgut transcriptome: messages for digestion, detoxification and defence , 2010, Insect molecular biology.
[18] R. Reinhardt,et al. A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator). , 2009, Molecular phylogenetics and evolution.
[19] Ying Wang,et al. Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim , 2010, BMC Genomics.
[20] L. Herrera-Estrella,et al. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing , 2009, BMC Genomics.
[21] Melody S Clark,et al. Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing , 2010, BMC Genomics.
[22] B. Haas,et al. Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology , 2006, BMC Genomics.
[23] Heiko Vogel,et al. Characterization of a Hotspot for Mimicry: Assembly of a Butterfly Wing Transcriptome to Genomic Sequence at the Hmyb/sb Locus , 2022 .
[24] Naomi S. Altman,et al. Comparison of next generation sequencing technologies for transcriptome characterization , 2009 .
[25] Thomas Wetter,et al. Genome Sequence Assembly Using Trace Signals and Additional Sequence Information , 1999, German Conference on Bioinformatics.
[26] T. Bekel,et al. Open Access Research Article Transcriptome Sequencing and Comparative Transcriptome Analysis of the Scleroglucan Producer Sclerotium Rolfsii , 2022 .
[27] T. Ravasi,et al. Rapid transcriptome and proteome profiling of a non‐model marine invertebrate, Bugula neritina , 2010, Proteomics.
[28] Ying Li,et al. De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis , 2010, BMC Genomics.
[29] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.
[30] Jonathan E. Allen,et al. Draft Genome of the Filarial Nematode Parasite Brugia malayi , 2007, Science.
[31] J. Mullikin,et al. SSAHA: a fast search method for large DNA databases. , 2001, Genome research.
[32] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[33] P. Bouffard,et al. Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species , 2009, BMC Genomics.
[34] C. Delwiche,et al. Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes , 2010, BMC Plant Biology.
[35] Evandro Novaes,et al. High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome , 2008, BMC Genomics.
[36] John Quackenbush,et al. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets , 2003, Bioinform..
[37] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[38] W Brad Barbazuk,et al. Gene discovery and annotation using LCM-454 transcriptome sequencing. , 2006, Genome research.
[39] X. Huang,et al. CAP3: A DNA sequence assembly program. , 1999, Genome research.
[40] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[41] E. Kristiansson,et al. Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing , 2009, BMC Genomics.
[42] Shengyue Wang,et al. Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (Laodelphax striatellus), a vector insect transmitting rice stripe virus (RSV) , 2010, BMC Genomics.
[43] A. Hoerauf,et al. Of Mice, Cattle, and Humans: The Immunology and Treatment of River Blindness , 2008, PLoS neglected tropical diseases.
[44] Jade Buchanan-Carter,et al. Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx , 2009, BMC Genomics.
[45] C. Buell,et al. Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches , 2008, BMC Genomics.
[46] D. Shoemaker,et al. Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis , 2009, BMC Genomics.
[47] Loren H. Rieseberg,et al. SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses , 2009, Bioinform..
[48] C. Soderlund,et al. PAVE: Program for assembling and viewing ESTs , 2009, BMC Genomics.
[49] Christopher J. Lee,et al. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing , 2009, BMC Genomics.
[50] Jan Gorodkin,et al. 454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides , 2009, BMC Genomics.
[51] Simon Swindell,et al. Sequence Data Analysis Guidebook , 1996 .
[52] Ross S Hall,et al. Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus , 2010, BMC Genomics.
[53] Winston A Hide,et al. A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base. , 1999, Genome research.