Histological grade and type classification of glioma using Magnetic Resonance Imaging

Glioma is one of the most common brain tumors with high mortality and its histological grading and typing is important both in therapeutic decision and prognosis evaluation. This paper aims at using the high-throughput image feature analysis method to estimate the histological grade and type of a patient by using Magnetic Resonance Imaging (MRI) instead of histological examination. The proposed method consists of the initial label definition, the region-of-interest delineation, the self-adaptive feature extraction, the feature subset selection, and the multi-class voting classification. Hereinto, a novel feature extraction strategy is designed, which could avoid the MRI scan diversity so as to get the robust feature extraction result and make the proposed framework more stable and effective. This method was validated on a database of 124 patients with the grade II to IV of 78, 25, and 21, and with astrocytoma, oligodendroglioma, oligoastrocytoma of 86, 16, and 22, respectively. We show that by using the leave-one-out cross-validation, the multi-class classification accuracy and macro average could reach 88.71%, 0.8362 respectively for the grade classification, and 70.97%, 0.5692 respectively for the type classification. It can be concluded that the histological grade and subtype information could be estimated from the MRI image analysis.

[1]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[2]  Mary M. Galloway,et al.  Texture analysis using gray level run lengths , 1974 .

[3]  Robert King,et al.  Textural features corresponding to textural properties , 1989, IEEE Trans. Syst. Man Cybern..

[4]  James F. Greenleaf,et al.  Use of gray value distribution of run lengths for texture analysis , 1990, Pattern Recognit. Lett..

[5]  J. Koudstaal,et al.  Proliferative activity in human brain tumors: comparison of histopathology and L-[1-(11)C]tyrosine PET. , 1997, Journal of nuclear medicine : official publication, Society of Nuclear Medicine.

[6]  S. Brem,et al.  Survival rates in patients with primary malignant brain tumors stratified by patient age and tumor histological type: an analysis based on Surveillance, Epidemiology, and End Results (SEER) data, 1973-1991. , 1998, Journal of neurosurgery.

[7]  Lipo Wang,et al.  Data dimensionality reduction with application to simplifying RBF network structure and improving classification performance , 2003, IEEE Trans. Syst. Man Cybern. Part B.

[8]  G. Collewet,et al.  Influence of MRI acquisition protocols and image intensity normalization methods on texture classification. , 2004, Magnetic resonance imaging.

[9]  Johan A. K. Suykens,et al.  Least Squares Support Vector Machine Classifiers , 1999, Neural Processing Letters.

[10]  Vladimir Vezhnevets,et al.  “GrowCut” - Interactive Multi-Label N-D Image Segmentation By Cellular Automata , 2005 .

[11]  Bing Liu,et al.  An efficient semi-unsupervised gene selection method via spectral biclustering , 2006, IEEE Transactions on NanoBioscience.

[12]  Jie Yang,et al.  Degree prediction of malignancy in brain glioma using support vector machines , 2006, Comput. Biol. Medicine.

[13]  R. Young,et al.  Brain MRI: Tumor evaluation , 2006, Journal of magnetic resonance imaging : JMRI.

[14]  Trevor Hastie,et al.  Multi-class AdaBoost ∗ , 2009 .

[15]  Christos Davatzikos,et al.  Classification of brain tumor type and grade using MRI texture and shape in a machine learning scheme , 2009, Magnetic resonance in medicine.

[16]  Bernard Fertil,et al.  Texture indexes and gray level size zone matrix. Application to cell nuclei classification , 2009 .

[17]  Andre Dekker,et al.  Radiomics: the process and the challenges. , 2012, Magnetic resonance imaging.

[18]  Bernard Fertil,et al.  Shape and Texture Indexes Application to Cell nuclei Classification , 2013, Int. J. Pattern Recognit. Artif. Intell..

[19]  Vinod Kumar,et al.  Segmentation, Feature Extraction, and Multiclass Brain Tumor Classification , 2013, Journal of Digital Imaging.

[20]  Kenneth Revett,et al.  Computer-aided diagnosis of human brain tumor through MRI: A survey and a new algorithm , 2014, Expert Syst. Appl..

[21]  Yi Guo,et al.  Robust phase-based texture descriptor for classification of breast ultrasound images , 2015, BioMedical Engineering OnLine.

[22]  Liang Chen,et al.  Brain tumor segmentation in MR slices using improved GrowCut algorithm , 2015, International Conference on Graphic and Image Processing.

[23]  P. Sukumar,et al.  Computer Aided Detection of Cervical Cancer Using Pap Smear Images Based on Adaptive Neuro Fuzzy Inference System Classifier , 2016 .

[24]  J. Barnholtz-Sloan,et al.  American Brain Tumor Association Adolescent and Young Adult Primary Brain and Central Nervous System Tumors Diagnosed in the United States in 2008-2012. , 2016, Neuro-oncology.

[25]  M. Monica Subashini,et al.  A non-invasive methodology for the grade identification of astrocytoma using image processing and artificial intelligence techniques , 2016, Expert Syst. Appl..