RInSp: an r package for the analysis of individual specialization in resource use

Summary In the last decade, an increasing number of papers testifies a renewed interest in the topic of individual specialization in resource use and its implication at higher levels of ecological organization. We present the package R Individual Specialization (RInSp) for the free open-source statistical software r. RInSp provides a comprehensive set of classical and recently proposed indices for quantifying the degree of individual specialization using both categorical and continuous resource use data. The package also includes tools for ad hoc Monte Carlo and jackknife resampling procedures for significance testing, plotting and input/output data manipulation. The use of RInSp is demonstrated by two examples. In addition, the potential of the package to be implemented beyond its original scope for multi-level quantitative analyses of individual trait variance in natural communities is illustrated.

[1]  A. Vespignani,et al.  The architecture of complex weighted networks. , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Louie H. Yang,et al.  The Ecology of Individuals: Incidence and Implications of Individual Specialization , 2002, The American Naturalist.

[3]  David D. Ackerly,et al.  Community assembly and shifts in plant trait distributions across an environmental gradient in coastal California , 2009 .

[4]  Márcio S Araújo,et al.  The ecological causes of individual specialisation. , 2011, Ecology letters.

[5]  Cyrille Violle,et al.  The return of the variance: intraspecific variability in community ecology. , 2012, Trends in ecology & evolution.

[6]  R. Levins Evolution in Changing Environments , 1968 .

[7]  P. Petraitis,et al.  Likelihood Measures of Niche Breadth and Overlap , 1979 .

[8]  S WRIGHT,et al.  Genetical structure of populations. , 1950, Nature.

[9]  Jonathan Roughgarden,et al.  Evolution of Niche Width , 1972, The American Naturalist.

[10]  Daniel I. Bolnick,et al.  MEASURING INDIVIDUAL-LEVEL RESOURCE SPECIALIZATION , 2002 .

[11]  Márcio S. Araújo,et al.  Using δ13C stable isotopes to quantify individual-level diet variation , 2007, Oecologia.

[12]  Giorgio Mancinelli,et al.  Intraspecific, size-dependent variation in the movement behaviour of a brackish-water isopod: a resource-free laboratory experiment , 2010 .

[13]  L. Potenza,et al.  Body mass-related shift in movement behaviour in the isopod Lekanesphaera hookeri (Isopoda, Flabellifera): A laboratory study , 2010 .

[14]  S. Schreiber,et al.  Why intraspecific trait variation matters in community ecology. , 2011, Trends in ecology & evolution.

[15]  H. Lehtonen,et al.  Resource use of native and stocked brown trout Salmo trutta L., in a subarctic lake , 2001 .

[16]  T. Schoener The Anolis Lizards of Bimini: Resource Partitioning in a Complex Fauna , 1968 .

[17]  Jonathan Roughgarden,et al.  Niche Width: Biogeographic Patterns Among Anolis Lizard Populations , 1974, The American Naturalist.

[18]  L. V. Valen,et al.  MORPHOLOGICAL VARIATION AND WIDTH OF ECOLOGICAL NICHE , 1965 .

[19]  J. Roughgarden,et al.  Theory of Population Genetics and Evolutionary Ecology , 1979 .

[20]  C. Stern CONCLUDING REMARKS OF THE CHAIRMAN , 1950 .

[21]  Robert K. Colwell,et al.  Hutchinson's duality: The once and future niche , 2009, Proceedings of the National Academy of Sciences.

[22]  Daniel I. Bolnick,et al.  Morphological and dietary differences between individuals are weakly but positively correlated within a population of threespine stickleback , 2009 .

[23]  Daniel Simberloff,et al.  Competition, Scientific Method, and Null Models in Ecology , 1986 .

[24]  Mikko Kivelä,et al.  Generalizations of the clustering coefficient to weighted complex networks. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[25]  Márcio S Araújo,et al.  Network analysis reveals contrasting effects of intraspecific competition on individual vs. population diets. , 2008, Ecology.

[26]  Werner Ulrich,et al.  A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement , 2008 .