The function of spliceosome components in open mitosis

Spatial separation of eukaryotic cells into the nuclear and cytoplasmic compartment permits uncoupling of DNA transcription from translation of mRNAs, and allows cells to modify newly transcribed pre mRNAs extensively. Intronic sequences (introns), which interrupt the coding elements (exons), are excised (“spliced”) from pre mRNAs in the nucleus to yield mature mRNAs. This not only enables alternative splicing as an important source of proteome diversity. Splicing is also an essential process in all eukaryotes and knock-out or knock-down of splicing factors frequently results in defective cell proliferation and cell division. However, higher eukaryotes progress through cell division only after breakdown of the nucleus (“open mitosis”). Open mitosis suppresses basic nuclear functions such as transcription and splicing, but allows separate, mitotic functions of nuclear proteins in cell division. Mitotic defects arising after loss-of-function of splicing proteins therefore could be an indirect consequence of compromised splicing in the closed nucleus of the preceding interphase, or reflect a direct contribution of splicing proteins to open mitosis. Although experiments to directly distinguish between these two alternatives have not been reported, indirect evidence exists for either hypotheses. In this review, we survey published data supporting an indirect function of splicing in open mitosis or arguing for a direct function of spliceosomal proteins in cell division.

[1]  Henning Urlaub,et al.  Composition and three‐dimensional EM structure of double affinity‐purified, human prespliceosomal A complexes , 2007, The EMBO journal.

[2]  L. Banks,et al.  Ski interacts with the evolutionarily conserved SNW domain of Skip. , 2001, Nucleic acids research.

[3]  T. Schroer,et al.  Cytoplasmic Dynein as a Facilitator of Nuclear Envelope Breakdown , 2002, Cell.

[4]  W. Tsai,et al.  The Prp19p-Associated Complex in Spliceosome Activation , 2003, Science.

[5]  G. Ast,et al.  Alternative splicing and evolution: diversification, exon definition and function , 2010, Nature Reviews Genetics.

[6]  E. J. Vicente,et al.  PSO4: a novel gene involved in error-prone repair in Saccharomyces cerevisiae. , 1989, Mutation research.

[7]  Andrew W. Murray,et al.  Cyclin synthesis drives the early embryonic cell cycle , 1989, Nature.

[8]  G. Chawla,et al.  Dependence of pre-mRNA introns on PRP17, a non-essential splicing factor: implications for efficient progression through cell cycle transitions. , 2003, Nucleic acids research.

[9]  G. Blobel,et al.  The nuclear envelope lamina is reversibly depolymerized during mitosis , 1980, Cell.

[10]  A. Düsterhöft,et al.  Allelism of PSO4 and PRP19 links pre-mRNA processing with recombination and error-prone DNA repair in Saccharomyces cerevisiae. , 1996, Nucleic acids research.

[11]  E. Nigg Assembly and cell cycle dynamics of the nuclear lamina. , 1992, Seminars in cell biology.

[12]  A. Hyman,et al.  Genome-scale RNAi profiling of cell division in human tissue culture cells , 2007, Nature Cell Biology.

[13]  R. Durbin,et al.  Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes , 2010, Nature.

[14]  P. Folk,et al.  Transcriptional coregulator SNW/SKIP: the concealed tie of dissimilar pathways , 2004, Cellular and Molecular Life Sciences CMLS.

[15]  J. Ellenberg,et al.  The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis. , 2004, Molecular biology of the cell.

[16]  R. Darnell,et al.  Nova Regulates GABAA Receptor γ2 Alternative Splicing via a Distal Downstream UCAU-Rich Intronic Splicing Enhancer , 2003, Molecular and Cellular Biology.

[17]  Anna Marie Pyle,et al.  Structural insights into RNA splicing. , 2009, Current opinion in structural biology.

[18]  J. Manley,et al.  Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches , 2009, Nature Reviews Molecular Cell Biology.

[19]  C. Beattie,et al.  Spinal muscular atrophy: why do low levels of survival motor neuron protein make motor neurons sick? , 2009, Nature Reviews Neuroscience.

[20]  L. Maquat,et al.  Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. , 2005, Current opinion in cell biology.

[21]  M. Hayman,et al.  The Ski oncoprotein interacts with Skip, the human homolog of Drosophila Bx42 , 1998, Oncogene.

[22]  Y. Kassir,et al.  Efficient initiation of S-phase in yeast requires Cdc40p, a protein involved in pre-mRNA splicing , 1998, Molecular and General Genetics MGG.

[23]  Douglas L. Black,et al.  Neuronal regulation of alternative pre-mRNA splicing , 2007, Nature Reviews Neuroscience.

[24]  R. Loomis,et al.  Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation. , 2009, Molecular cell.

[25]  F. Boisvert,et al.  The multifunctional nucleolus , 2007, Nature Reviews Molecular Cell Biology.

[26]  M. Rosbash,et al.  A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition. , 1998, Genes & development.

[27]  K. Neugebauer,et al.  Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies , 2003, The Journal of cell biology.

[28]  M. Carmo-Fonseca,et al.  The spliceosome: a self-organized macromolecular machine in the nucleus? , 2009, Trends in cell biology.

[29]  R. Lührmann,et al.  Human U4/U6 snRNP Recycling Factor p110: Mutational Analysis Reveals the Function of the Tetratricopeptide Repeat Domain in Recycling , 2004, Molecular and Cellular Biology.

[30]  J. Ellenberg,et al.  Systematic kinetic analysis of mitotic dis- and reassembly of the nuclear pore in living cells , 2008, The Journal of cell biology.

[31]  K. Gould,et al.  Myb-Related Fission Yeast cdc5p Is a Component of a 40S snRNP-Containing Complex and Is Essential for Pre-mRNA Splicing , 1999, Molecular and Cellular Biology.

[32]  M. Bellini,et al.  The assembly of a spliceosomal small nuclear ribonucleoprotein particle , 2008, Nucleic acids research.

[33]  K. Nagai,et al.  Structural studies of the spliceosome: blind men and an elephant. , 2010, Current opinion in structural biology.

[34]  E. Makarov,et al.  The 65 and 110 kDa SR‐related proteins of the U4/U6·U5 tri‐snRNP are essential for the assembly of mature spliceosomes , 2001, The EMBO journal.

[35]  M. Kupiec,et al.  A role for the yeast cell cycle/splicing factor Cdc40 in the G1/S transition , 2007, Current Genetics.

[36]  J. B. Rattner,et al.  Nup358 integrates nuclear envelope breakdown with kinetochore assembly , 2003, The Journal of cell biology.

[37]  Eric T. Wang,et al.  Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.

[38]  Nianxiang Zhang,et al.  Cdc5L interacts with ATR and is required for the S‐phase cell‐cycle checkpoint , 2009, EMBO reports.

[39]  K. L. Gould,et al.  The Schizosaccharomyces pombe cdc5+ gene encodes an essential protein with homology to c‐Myb. , 1994, The EMBO journal.

[40]  B. Blencowe Splicing Regulation: The Cell Cycle Connection , 2003, Current Biology.

[41]  K. Gould,et al.  Proteomics Analysis Reveals Stable Multiprotein Complexes in Both Fission and Budding Yeasts Containing Myb-Related Cdc5p/Cef1p, Novel Pre-mRNA Splicing Factors, and snRNAs , 2002, Molecular and Cellular Biology.

[42]  C. Shin,et al.  The SR Protein SRp38 Represses Splicing in M Phase Cells , 2002, Cell.

[43]  T. Nilsen The spliceosome: the most complex macromolecular machine in the cell? , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

[44]  C. Prives,et al.  Cell-cycle related regulation of poly(A) polymerase by phosphorylation , 1996, Nature.

[45]  U. Kutay,et al.  Orchestrating nuclear envelope disassembly and reassembly during mitosis , 2009, Nature Reviews Molecular Cell Biology.

[46]  J D Beggs,et al.  Identification and functional analysis of hPRP17, the human homologue of the PRP17/CDC40 yeast gene involved in splicing and cell cycle control. , 1998, RNA.

[47]  Robert B Darnell,et al.  Nova-1 Regulates Neuron-Specific Alternative Splicing and Is Essential for Neuronal Viability , 2000, Neuron.

[48]  R. Artero,et al.  The Muscleblind family of proteins: an emerging class of regulators of developmentally programmed alternative splicing. , 2006, Differentiation; research in biological diversity.

[49]  Henning Urlaub,et al.  Protein Composition and Electron Microscopy Structure of Affinity-Purified Human Spliceosomal B Complexes Isolated under Physiological Conditions , 2006, Molecular and Cellular Biology.

[50]  H. Katinger,et al.  Early Embryonic Lethality of Mice Lacking the Essential Protein SNEV , 2007, Molecular and Cellular Biology.

[51]  K. Neugebauer,et al.  Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer , 2004, The Journal of cell biology.

[52]  K. J. Hertel,et al.  Combinatorial Control of Exon Recognition* , 2008, Journal of Biological Chemistry.

[53]  N. Tapon,et al.  Drosophila MFAP1 Is Required for Pre-mRNA Processing and G2/M Progression* , 2008, Journal of Biological Chemistry.

[54]  J. Potashkin,et al.  Cell-division-cycle defects associated with fission yeast pre-mRNA splicing mutants , 1998, Current Genetics.

[55]  D. Forbes,et al.  Mitotic repression of the transcriptional machinery. , 1997, Trends in biochemical sciences.

[56]  H. Himmelbauer,et al.  An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division , 2004, Nature.

[57]  Christopher W. J. Smith,et al.  Alternative splicing: global insights , 2010, The FEBS journal.

[58]  S. Shichijo,et al.  Binding of a SART3 tumor‐rejection antigen to a pre‐mRNA splicing factor RNPS1: A possible regulation of splicing by a complex formation , 2001, International journal of cancer.

[59]  M. Mann,et al.  Large-scale Proteomic Analysis of the Human Spliceosome References , 2006 .

[60]  Ronald W. Davis,et al.  A genome-wide transcriptional analysis of the mitotic cell cycle. , 1998, Molecular cell.

[61]  L. Banks,et al.  Skip interacts with the retinoblastoma tumor suppressor and inhibits its transcriptional repression activity. , 2002, Nucleic acids research.

[62]  John T. Lis,et al.  Breaking barriers to transcription elongation , 2006, Nature Reviews Molecular Cell Biology.

[63]  T. Baudino,et al.  Isolation and Characterization of a Novel Coactivator Protein, NCoA-62, Involved in Vitamin D-mediated Transcription* , 1998, The Journal of Biological Chemistry.

[64]  M. Company,et al.  Isolation and characterization of pre-mRNA splicing mutants of Saccharomyces cerevisiae. , 1989, Genes & development.

[65]  R. Shiekhattar,et al.  The human Nup107–160 nuclear pore subcomplex contributes to proper kinetochore functions , 2007, The EMBO journal.

[66]  C. Guthrie,et al.  Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components , 2007, PLoS biology.

[67]  U. Kutay,et al.  Reorganization of the nuclear envelope during open mitosis. , 2008, Current opinion in cell biology.

[68]  Roland Eils,et al.  Nuclear Envelope Breakdown Proceeds by Microtubule-Induced Tearing of the Lamina , 2002, Cell.

[69]  Cell biology forum: Genome-wide view of mitosis , 2010, Nature.

[70]  M. Kupiec,et al.  The Saccharomyces cerevisiae gene CDC40/PRP17 controls cell cycle progression through splicing of the ANC1 gene. , 2004, Nucleic acids research.

[71]  T. Nilsen,et al.  Expansion of the eukaryotic proteome by alternative splicing , 2010, Nature.

[72]  C. Prives,et al.  Inhibition of poly(A) polymerase requires p34cdc2/cyclin B phosphorylation of multiple consensus and non‐consensus sites , 1998, The EMBO journal.

[73]  Samantha G. Zeitlin,et al.  The Nup107-160 nucleoporin complex is required for correct bipolar spindle assembly. , 2006, Molecular biology of the cell.

[74]  A. MacMillan,et al.  Spliceosome structure: piece by piece. , 2009, Biochimica et biophysica acta.

[75]  S. Kimball,et al.  Role of translation initiation factor eIF-2B in the regulation of protein synthesis in mammalian cells. , 1996, Progress in nucleic acid research and molecular biology.

[76]  Robert B Darnell,et al.  Nova autoregulation reveals dual functions in neuronal splicing , 2005, The EMBO journal.

[77]  W. Tarn,et al.  Functional association of essential splicing factor(s) with PRP19 in a protein complex. , 1994, The EMBO journal.

[78]  K. Sugaya,et al.  The conserved role of Smu1 in splicing is characterized in its mammalian temperature-sensitive mutant , 2006, Journal of Cell Science.

[79]  Tyson A. Clark,et al.  Nova regulates brain-specific splicing to shape the synapse , 2005, Nature Genetics.

[80]  M. Glotzer,et al.  Control of cortical contractility during cytokinesis. , 2008, Biochemical Society transactions.

[81]  J. Manley,et al.  Phosphorylation switches the general splicing repressor SRp38 to a sequence-specific activator , 2008, Nature Structural &Molecular Biology.

[82]  J. Manley,et al.  Inactivation of the SR Protein Splicing Factor ASF/SF2 Results in Genomic Instability , 2005, Cell.

[83]  R. Heald,et al.  A Rae1-Containing Ribonucleoprotein Complex Is Required for Mitotic Spindle Assembly , 2005, Cell.

[84]  O. Gavet,et al.  Activation of cyclin B1–Cdk1 synchronizes events in the nucleus and the cytoplasm at mitosis , 2010, The Journal of cell biology.

[85]  K. Shuai,et al.  Resolution of Sister Centromeres Requires RanBP2-Mediated SUMOylation of Topoisomerase IIα , 2008, Cell.

[86]  L. Pellizzoni Chaperoning ribonucleoprotein biogenesis in health and disease , 2007, EMBO reports.

[87]  P. Khandelia,et al.  The splicing factor Prp17 interacts with the U2, U5 and U6 snRNPs and associates with the spliceosome pre- and post-catalysis. , 2008, The Biochemical journal.

[88]  J. Friesen,et al.  Synthetic Lethality of Yeast slt Mutations with U2 Small Nuclear RNA Mutations Suggests Functional Interactions between U2 and U5 snRNPs That Are Important for Both Steps of Pre-mRNA Splicing , 1998, Molecular and Cellular Biology.

[89]  Britta Hartmann,et al.  Genome-wide Analysis of Alternative Pre-mRNA Splicing* , 2008, Journal of Biological Chemistry.

[90]  Marc Drolet,et al.  Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R‐loop formation and DNA topology , 2006, Molecular microbiology.

[91]  Tyson A. Clark,et al.  Removal of a Single α-Tubulin Gene Intron Suppresses Cell Cycle Arrest Phenotypes of Splicing Factor Mutations in Saccharomyces cerevisiae , 2002, Molecular and Cellular Biology.

[92]  M. Dasso,et al.  SUMO-2/3 regulates topoisomerase II in mitosis , 2003, The Journal of cell biology.

[93]  C. Will,et al.  Protein functions in pre-mRNA splicing. , 1997, Current opinion in cell biology.

[94]  B. Kuster,et al.  Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry , 2000, The EMBO journal.

[95]  C. Will,et al.  The Spliceosome: Design Principles of a Dynamic RNP Machine , 2009, Cell.

[96]  M. Wilm,et al.  A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicing , 2004, The EMBO journal.

[97]  J. Henriques,et al.  The PSO4 gene is responsible for an error-prone recombinational DNA repair pathway in Saccharomyces cerevisiae. , 1989, Molecular & general genetics : MGG.

[98]  J. Rappsilber,et al.  Splicing Factors Facilitate RNAi-Directed Silencing in Fission Yeast , 2008, Science.

[99]  Peter J. Shepard,et al.  The SR protein family , 2009, Genome Biology.

[100]  R. Durbin,et al.  Systematic Analysis of Human Protein Complexes Identifies Chromosome Segregation Proteins , 2010, Science.

[101]  S. Briggs,et al.  ELYS is a dual nucleoporin/kinetochore protein required for nuclear pore assembly and proper cell division , 2006, Proceedings of the National Academy of Sciences.

[102]  R. Foisner Dynamic organisation of intermediate filaments and associated proteins during the cell cycle , 1997, BioEssays : news and reviews in molecular, cellular and developmental biology.

[103]  H. Erfle,et al.  High-throughput RNAi screening by time-lapse imaging of live human cells , 2006, Nature Methods.

[104]  A. Bindereif,et al.  p110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor , 2002, The EMBO journal.

[105]  Ronald W. Davis,et al.  Transcriptional regulation and function during the human cell cycle , 2001, Nature Genetics.

[106]  A. Dejean,et al.  The Nucleoporin RanBP2 Has SUMO1 E3 Ligase Activity , 2002, Cell.

[107]  R. Reed,et al.  Functional association of U2 snRNP with the ATP-independent spliceosomal complex E. , 2000, Molecular cell.

[108]  Bertrand Séraphin,et al.  EJCs at the Heart of Translational Control , 2008, Cell.

[109]  J. Manley,et al.  New Talents for an Old Acquaintance: the SR Protein Splicing Factor ASF/SF2 Functions in the Maintenance of Genome Stability , 2005, Cell cycle.

[110]  U. Fischer,et al.  The role of RNP biogenesis in spinal muscular atrophy. , 2009, Current opinion in cell biology.

[111]  J. Brüning,et al.  PLRG1 Is an Essential Regulator of Cell Proliferation and Apoptosis during Vertebrate Development and Tissue Homeostasis , 2009, Molecular and Cellular Biology.

[112]  A. Lindqvist Cyclin B–Cdk1 activates its own pump to get into the nucleus , 2010, The Journal of cell biology.

[113]  J. Manley,et al.  Splicing of mRNA precursors: the role of RNAs and proteins in catalysis. , 2009, Molecular bioSystems.

[114]  S. Cheng,et al.  The yeast PRP19 protein is not tightly associated with small nuclear RNAs, but appears to associate with the spliceosome after binding of U2 to the pre-mRNA and prior to formation of the functional spliceosome , 1993, Molecular and cellular biology.

[115]  Douglas L Black,et al.  A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. , 2007, Genes & development.

[116]  Michael Ruogu Zhang,et al.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.

[117]  Xiang-Dong Fu,et al.  SR proteins and related factors in alternative splicing. , 2007, Advances in experimental medicine and biology.

[118]  M. Wilm,et al.  Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[119]  H. Kuroyanagi Fox-1 family of RNA-binding proteins , 2009, Cellular and Molecular Life Sciences.

[120]  H. Fan,et al.  Regulation of protein synthesis in mammalian cells. II. Inhibition of protein synthesis at the level of initiation during mitosis. , 1970, Journal of molecular biology.

[121]  H. Yamana,et al.  A Gene Encoding Antigenic Peptides of Human Squamous Cell Carcinoma Recognized by Cytotoxic T Lymphocytes , 1998, The Journal of experimental medicine.

[122]  L. Shkreta,et al.  hnRNP proteins and splicing control. , 2007, Advances in experimental medicine and biology.

[123]  P. DiMario Cell and molecular biology of nucleolar assembly and disassembly. , 2004, International review of cytology.

[124]  M. Kupiec,et al.  Extensive genetic interactions between PRP8 and PRP17/CDC40, two yeast genes involved in pre-mRNA splicing and cell cycle progression. , 2000, Genetics.

[125]  J. Rudolph Cdc25 phosphatases: structure, specificity, and mechanism. , 2007, Biochemistry.

[126]  Melissa S Jurica,et al.  Pre-mRNA splicing: awash in a sea of proteins. , 2003, Molecular cell.

[127]  T. Anan,et al.  PIASy mediates SUMO‐2 conjugation of Topoisomerase‐II on mitotic chromosomes , 2005, The EMBO journal.

[128]  W. Earnshaw,et al.  Chromosomal passengers: conducting cell division , 2007, Nature Reviews Molecular Cell Biology.

[129]  U. Kutay,et al.  An in vitro nuclear disassembly system reveals a role for the RanGTPase system and microtubule-dependent steps in nuclear envelope breakdown , 2007, The Journal of cell biology.

[130]  M. Rosbash,et al.  The Splicing Factor BBP Interacts Specifically with the Pre-mRNA Branchpoint Sequence UACUAAC , 1997, Cell.

[131]  B. Frey,et al.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing , 2008, Nature Genetics.

[132]  R. Heald,et al.  Genome-wide analysis demonstrates conserved localization of messenger RNAs to mitotic microtubules , 2007, The Journal of cell biology.

[133]  Robert Castelo,et al.  Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition. , 2005, Molecular cell.

[134]  Henning Urlaub,et al.  Molecular Architecture of the Human Prp19/CDC5L Complex , 2010, Molecular and Cellular Biology.

[135]  Henning Urlaub,et al.  Small Nuclear Ribonucleoprotein Remodeling During Catalytic Activation of the Spliceosome , 2002, Science.

[136]  J. Cáceres,et al.  The SR protein family of splicing factors: master regulators of gene expression. , 2009, The Biochemical journal.

[137]  N. Hacohen,et al.  RNA interference knockdown of hU2AF35 impairs cell cycle progression and modulates alternative splicing of Cdc25 transcripts. , 2006, Molecular biology of the cell.

[138]  Steven P. Gygi,et al.  Comprehensive proteomic analysis of the human spliceosome , 2002, Nature.

[139]  J. Schelter,et al.  Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies , 2007, Nature Methods.

[140]  H. Urlaub,et al.  Isolation of an active step I spliceosome and composition of its RNP core , 2008, Nature.

[141]  M. Dasso,et al.  The RanGAP1-RanBP2 Complex Is Essential for Microtubule-Kinetochore Interactions In Vivo , 2004, Current Biology.