Kribbella albertanoniae sp. nov., isolated from a Roman catacomb, and emended description of the genus Kribbella.

A novel actinobacterium, strain BC640(T), was isolated from a biofilm sample collected in 2009 in the Saint Callistus Roman catacombs. Analysis of the 16S rRNA gene sequence showed that the strain belonged to the genus Kribbella. Phylogenetic analysis using the 16S rRNA gene and concatenated gyrB, rpoB, relA, recA and atpD gene sequences showed that strain BC640(T) was most closely related to the type strains of Kribbella yunnanensis and Kribbella sandramycini. Based on gyrB genetic distance analysis, strain BC640(T) was shown to be distinct from all Kribbella type strains. DNA-DNA hybridization experiments confirmed that strain BC640(T) represents a genomic species distinct from its closest phylogenetic relatives, K. yunnanensis DSM 15499(T) (53.5±7.8 % DNA relatedness) and K. sandramycini DSM 15626(T) (33.5±5.0 %). Physiological comparisons further showed that strain BC640(T) is phenotypically distinct from the type strains of K. yunnanensis and K. sandramycini. Strain BC640(T) ( = DSM 26744(T) = NRRL B-24917(T)) is thus presented as the type strain of a novel species, for which the name Kribbella albertanoniae sp. nov. is proposed.

[1]  Onuma Kaewkla,et al.  Kribbella endophytica sp. nov., an endophytic actinobacterium isolated from the surface-sterilized leaf of a native apricot tree. , 2013, International journal of systematic and evolutionary microbiology.

[2]  P. Meyers,et al.  Multilocus sequence analysis of the actinobacterial genus Kribbella. , 2012, Systematic and applied microbiology.

[3]  Z. Zheng,et al.  Kribbella amoyensis sp. nov., isolated from rhizosphere soil of a pharmaceutical plant, Typhonium giganteum Engl. , 2012, International journal of systematic and evolutionary microbiology.

[4]  J. Chun,et al.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. , 2012, International journal of systematic and evolutionary microbiology.

[5]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[6]  B. Kirby,et al.  Phylogenetic analysis of the genus Kribbella based on the gyrB gene: proposal of a gyrB-sequence threshold for species delineation in the genus Kribbella , 2010, Antonie van Leeuwenhoek.

[7]  P. Schumann,et al.  Kribbella catacumbae sp. nov. and Kribbella sancticallisti sp. nov., isolated from whitish-grey patinas in the catacombs of St Callistus in Rome, Italy. , 2008, International journal of systematic and evolutionary microbiology.

[8]  P. Meyers,et al.  Kribbella hippodromi sp. nov., isolated from soil from a racecourse in South Africa. , 2008, International journal of systematic and evolutionary microbiology.

[9]  R. Kroppenstedt,et al.  Kribbella lupini sp. nov., isolated from the roots of Lupinus angustifolius. , 2006, International journal of systematic and evolutionary microbiology.

[10]  Wenjun Li,et al.  Kribbella yunnanensis sp. nov., Kribbella alba sp. nov., two novel species of genus Kribbella isolated from soils in Yunnan, China. , 2006, Systematic and applied microbiology.

[11]  P. Meyers,et al.  Rapid identification of filamentous actinomycetes to the genus level using genus-specific 16S rRNA gene restriction fragment patterns. , 2003, International journal of systematic and evolutionary microbiology.

[12]  J. Chun,et al.  Transfer of Hongia koreensis Lee et al. 2000 to the genus Kribbella Park et al. 1999 as Kribbella koreensis comb. nov. , 2003, International journal of systematic and evolutionary microbiology.

[13]  D. Gevers,et al.  Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. , 2001, FEMS microbiology letters.

[14]  F. De Leo,et al.  Sampling with adhesive tape strips: an easy and rapid method to monitor microbial colonization on monument surfaces. , 2001, Journal of microbiological methods.

[15]  M. Nei,et al.  Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. , 2000, Molecular biology and evolution.

[16]  J. S. Lee,et al.  Classification of 'Nocardioides fulvus' IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov. , 1999, International journal of systematic bacteriology.

[17]  Ronald M. Atlas,et al.  Handbook of microbiological media , 1993 .

[18]  Takayuki Ezaki,et al.  Fluorometric Deoxyribonucleic Acid-Deoxyribonucleic Acid Hybridization in Microdilution Wells as an Alternative to Membrane Filter Hybridization in which Radioisotopes Are Used To Determine Genetic Relatedness among Bacterial Strains , 1989 .

[19]  Lawrence G. Wayne International Committee on Systematic Bacteriology: announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial Systematics. , 1988, Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology.

[20]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[21]  E. Geldreich,et al.  A new medium for the enumeration and subculture of bacteria from potable water , 1985, Applied and environmental microbiology.

[22]  D. Minnikin,et al.  AN INTEGRATED PROCEDURE FOR THE EXTRACTION OF BACTERIAL ISOPRENOID QUINONES AND POLAR LIPIDS , 1984 .

[23]  M. Kimura A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.

[24]  H. Lechevalier,et al.  Chemical composition as a criterion in the classification of aerobic actinomycetes , 1970 .

[25]  E. B. Shirling,et al.  Methods for characterization of Streptomyces species , 1966 .

[26]  J. Felsenstein Evolutionary trees from DNA sequences: A maximum likelihood approach , 2005, Journal of Molecular Evolution.

[27]  Wenjun Li,et al.  Kribbella antibiotica sp. nov., a novel nocardioform actinomycete strain isolated from soil in Yunnan, China. , 2004, Systematic and applied microbiology.

[28]  G. Garrity Bergey's Manual of systematic bacteriology , 2001 .

[29]  K. Komagata,et al.  4 Lipid and Cell-Wall Analysis in Bacterial Systematics , 1988 .

[30]  T. Hasegawa,et al.  A rapid analysis for chemical grouping of aerobic actinomycetes. , 1983 .