Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions
暂无分享,去创建一个
[1] E. Fischer. Einfluss der Configuration auf die Wirkung der Enzyme , 1894 .
[2] D. Koshland. Application of a Theory of Enzyme Specificity to Protein Synthesis. , 1958, Proceedings of the National Academy of Sciences of the United States of America.
[3] Kornelia Polyak,et al. Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex , 1995, Nature.
[4] L. Johnson,et al. Structural basis for control by phosphorylation. , 1997, Chemical reviews.
[5] Patrick Aloy,et al. Interrogating protein interaction networks through structural biology , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[6] D. Kern,et al. The role of dynamics in allosteric regulation. , 2003, Current opinion in structural biology.
[7] M. Gerstein,et al. Conformational changes associated with protein-protein interactions. , 2004, Current opinion in structural biology.
[8] I. Bahar,et al. Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[9] P. Bork,et al. Dynamic Complex Formation During the Yeast Cell Cycle , 2005, Science.
[10] Ozlem Keskin,et al. Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces , 2005, Bioinform..
[11] Peer Bork,et al. Towards Cellular Systems in 4D , 2005, Cell.
[12] Philip M. Kim,et al. Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights , 2006, Science.
[13] Haruki Nakamura,et al. Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks , 2006, FEBS letters.
[14] Lilia M. Iakoucheva,et al. Intrinsic Disorder Is a Common Feature of Hub Proteins from Four Eukaryotic Interactomes , 2006, PLoS Comput. Biol..
[15] K. Komurov,et al. Revealing static and dynamic modular architecture of the eukaryotic protein interaction network , 2007, Molecular Systems Biology.
[16] Debasis Dash,et al. Role of intrinsic disorder in transient interactions of hub proteins , 2006, Proteins.
[17] Ozlem Keskin,et al. Similar binding sites and different partners: implications to shared proteins in cellular pathways. , 2007, Structure.
[18] Santo Fortunato,et al. Is the intrinsic disorder of proteins the cause of the scale‐free architecture of protein–protein interaction networks? , 2006, Proteomics.
[19] Kengo Kinoshita,et al. Identification of transient hub proteins and the possible structural basis for their multiple interactions , 2008, Protein science : a publication of the Protein Society.
[20] Philip M. Kim,et al. The role of disorder in interaction networks: a structural analysis , 2008, Molecular systems biology.
[21] S. Takada,et al. Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms , 2008, Proceedings of the National Academy of Sciences.
[22] Christina Kiel,et al. Analyzing protein interaction networks using structural information. , 2008, Annual review of biochemistry.
[23] Ozlem Keskin,et al. PRISM: protein-protein interaction prediction by structural matching. , 2008, Methods in molecular biology.
[24] Ozlem Keskin,et al. Topological properties of protein interaction networks from a structural perspective. , 2008, Biochemical Society transactions.
[25] Ozlem Keskin,et al. Towards inferring time dimensionality in protein–protein interaction networks by integrating structures: the p53 example† †This article is part of a Molecular BioSystems themed issue on Computational and Systems Biology. , 2009, Molecular bioSystems.
[26] J. Thornton,et al. The structural basis of allosteric regulation in proteins , 2009, FEBS letters.
[27] Mark Gerstein,et al. RigidFinder: A fast and sensitive method to detect rigid blocks in large macromolecular complexes , 2010, Proteins.
[28] Arnaud Céol,et al. 3did: identification and classification of domain-based interactions of known three-dimensional structure , 2010, Nucleic Acids Res..