Estimating tree species diversity in the savannah using NDVI and woody canopy cover

Abstract Remote sensing applications in biodiversity research often rely on the establishment of relationships between spectral information from the image and tree species diversity measured in the field. Most studies have used normalized difference vegetation index (NDVI) to estimate tree species diversity on the basis that it is sensitive to primary productivity which defines spatial variation in plant diversity. The NDVI signal is influenced by photosynthetically active vegetation which, in the savannah, includes woody canopy foliage and grasses. The question is whether the relationship between NDVI and tree species diversity in the savanna depends on the woody cover percentage. This study explored the relationship between woody canopy cover (WCC) and tree species diversity in the savannah woodland of southern Africa and also investigated whether there is a significant interaction between seasonal NDVI and WCC in the factorial model when estimating tree species diversity. To fulfil our aim, we followed stratified random sampling approach and surveyed tree species in 68 plots of 90 m × 90 m across the study area. Within each plot, all trees with diameter at breast height of >10 cm were sampled and Shannon index − a common measure of species diversity which considers both species richness and abundance − was used to quantify tree species diversity. We then extracted WCC in each plot from existing fractional woody cover product produced from Synthetic Aperture Radar (SAR) data. Factorial regression model was used to determine the interaction effect between NDVI and WCC when estimating tree species diversity. Results from regression analysis showed that (i) WCC has a highly significant relationship with tree species diversity (r2 = 0.21; p

[1]  Roberta E. Martin,et al.  Large-scale impacts of herbivores on the structural diversity of African savannas , 2009, Proceedings of the National Academy of Sciences.

[2]  Shoab Ahmad Khan,et al.  Satellite-based land use mapping: comparative analysis of Landsat-8, Advanced Land Imager, and big data Hyperion imagery , 2016 .

[3]  Charlie M. Shackleton,et al.  Comparison of plant diversity in protected and communal lands in the Bushbuckridge lowveld savanna, South Africa , 2000 .

[4]  D. Rocchini,et al.  Does using species abundance data improve estimates of species diversity from remotely sensed spectral heterogeneity , 2010 .

[5]  W. Luus‐Powell,et al.  Factors influencing the adaptation and distribution of Colophospermum mopane in southern Africa’s mopane savannas – A review , 2014 .

[6]  M. Hill,et al.  Data analysis in community and landscape ecology , 1987 .

[7]  M. Schildhauer,et al.  Monitoring plant functional diversity from space , 2016, Nature Plants.

[8]  F. I. Woodward,et al.  The importance of low atmospheric CO2 and fire in promoting the spread of grasslands and savannas , 2003 .

[9]  J. Kerr,et al.  From space to species: ecological applications for remote sensing , 2003 .

[10]  Gregory Asner,et al.  Improving Discrimination of Savanna Tree Species Through a Multiple-Endmember Spectral Angle Mapper Approach: Canopy-Level Analysis , 2010, IEEE Transactions on Geoscience and Remote Sensing.

[11]  Laura A. Brandt,et al.  Performance metrics and variance partitioning reveal sources of uncertainty in species distribution models , 2015 .

[12]  W. Dean,et al.  The influence of changes in habitat structure on the species composition of bird assemblages in the southern Kalahari , 2009 .

[13]  W. Gould REMOTE SENSING OF VEGETATION, PLANT SPECIES RICHNESS, AND REGIONAL BIODIVERSITY HOTSPOTS , 2000 .

[14]  Waldo Kleynhans,et al.  Savannah woody structure modelling and mapping using multi-frequency (X-, C- and L-band) synthetic aperture radar data , 2015 .

[15]  Roberta E. Martin,et al.  Topo-edaphic controls over woody plant biomass in South African savannas , 2012 .

[16]  C. E. SHANNON,et al.  A mathematical theory of communication , 1948, MOCO.

[17]  L Gillson,et al.  Thresholds of potential concern as benchmarks in the management of African savannahs , 2007, Philosophical Transactions of the Royal Society B: Biological Sciences.

[18]  Ruben Van De Kerchove,et al.  Monitoring grass nutrients and biomass as indicators of rangeland quality and quantity using random forest modelling and WorldView-2 data , 2015, Int. J. Appl. Earth Obs. Geoinformation.

[19]  B. Erasmus,et al.  A tale of two villages: assessing the dynamics of fuelwood supply in communal landscapes in South Africa , 2012, Environmental Conservation.

[20]  Duccio Rocchini,et al.  odeling-and-diversity in a tropical forest from remotely sensed and patial data , 2012 .

[21]  M. Cho,et al.  Remote sensing of species diversity using Landsat 8 spectral variables , 2017 .

[22]  Kate S. He,et al.  Linking variability in species composition and MODIS NDVI based on beta diversity measurements , 2009 .

[23]  M. Fenton,et al.  ELEPHANTS, WOODLANDS AND BIODIVERSITY IN SOUTHERN AFRICA , 1997 .

[24]  Samya Dahbi,et al.  Multiple regression model for surface roughness using full factorial design , 2015, 2015 International Conference on Industrial Engineering and Systems Management (IESM).

[25]  Volker C. Radeloff,et al.  Image Texture Predicts Avian Density and Species Richness , 2013, PloS one.

[26]  A. Skidmore,et al.  Interannual variability of NDVI and species richness in Kenya , 2002 .

[27]  Karen C. Seto,et al.  Linking spatial patterns of bird and butterfly species richness with Landsat TM derived NDVI , 2004 .

[28]  Kevin P. Price,et al.  Relations between NDVI and tree productivity in the central Great Plains , 2004 .

[29]  Guomo Zhou,et al.  Using Moran's I and GIS to study the spatial pattern of forest litter carbon density in a subtropical region of southeastern China , 2014 .

[30]  Brent N. Holben,et al.  Accuracy of the AVHRR vegetation index as a predictor of biomass, primary productivity and net CO2 flux , 1989, Vegetatio.

[31]  C. C. Grant,et al.  The importance of nutrient hot-spots in the conservation and management of large wild mammalian herbivores in semi-arid savannas , 2006 .

[32]  Susmita Mishra,et al.  Process optimization of adsorption of Cr(VI) on activated carbons prepared from plant precursors by a two-level full factorial design , 2010 .

[33]  Todd M. Scanlon,et al.  Determining land surface fractional cover from NDVI and rainfall time series for a savanna ecosystem , 2002 .

[34]  D. Rocchini Effects of spatial and spectral resolution in estimating ecosystem α-diversity by satellite imagery , 2007 .

[35]  Miska Luoto,et al.  NDVI-based productivity and heterogeneity as indicators of plant-species richness in boreal landscapes , 2010 .

[36]  Harry Biggs,et al.  Trends in woody vegetation cover in the Kruger National Park, South Africa, between 1940 and 1998 , 2000 .

[37]  Duccio Rocchini,et al.  Assessing Plant Diversity in a Dry Tropical Forest: Comparing the Utility of Landsat and Ikonos Satellite Images , 2010, Remote. Sens..

[38]  A. Townsend Peterson,et al.  Essential biodiversity variables are not global , 2018, Biodiversity and Conservation.

[39]  M. Cho,et al.  Mapping the occurrence of Chromolaena odorata (L.) in subtropical forest gaps using environmental and remote sensing data , 2015, Biological Invasions.

[40]  David W. Peterson,et al.  Fire frequency and tree canopy structure influence plant species diversity in a forest-grassland ecotone , 2007, Plant Ecology.

[41]  Lihle Dumalisile,et al.  Effects of Chromolaena odorata on mammalian biodiversity in Hluhluwe-iMfolozi Park, South Africa , 2009 .

[42]  Xingli Giam,et al.  Trade‐offs between savanna woody plant diversity and carbon storage in the Brazilian Cerrado , 2016, Global change biology.

[43]  Charlie M. Shackleton,et al.  The importance of dry woodlands and forests in rural livelihoods and poverty alleviation in South Africa , 2007 .

[44]  Prasad S. Thenkabail,et al.  Detecting floristic structure and pattern across topographic and moisture gradients in a mixed species Central African forest using IKONOS and Landsat-7 ETM+ images , 2003 .

[45]  Moses Azong Cho,et al.  Mapping tree species composition in South African savannas using an integrated airborne spectral and LiDAR system , 2012 .

[46]  Claude E. Shannon,et al.  The Mathematical Theory of Communication , 1950 .

[47]  Philippe Archambault,et al.  The relation between productivity and species diversity in temperate-Arctic marine ecosystems. , 2008, Ecology.

[48]  M. Fladeland,et al.  Remote sensing for biodiversity science and conservation , 2003 .

[49]  W. Bond,et al.  Deciphering the distribution of the savanna biome. , 2011, The New phytologist.

[50]  Thomas W. Gillespie,et al.  Dissecting NDVI–species richness relationships in Hawaiian dry forests , 2012 .

[51]  A. Viña,et al.  Comparison of different vegetation indices for the remote assessment of green leaf area index of crops , 2011 .

[52]  Ruben Van De Kerchove,et al.  Seasonal Separation of African Savanna Components Using Worldview-2 Imagery: A Comparison of Pixel- and Object-Based Approaches and Selected Classification Algorithms , 2016, Remote. Sens..

[53]  S. Archibald,et al.  A continent-wide assessment of the form and intensity of large mammal herbivory in Africa , 2015, Science.

[54]  Kelly K. Caylor,et al.  Determinants of woody cover in African savannas , 2005, Nature.

[55]  Frank van Langevelde,et al.  Leaf adaptations of evergreen and deciduous trees of semi‐arid and humid savannas on three continents , 2013 .

[56]  Rob Slotow,et al.  Ecological Thresholds in the Savanna Landscape: Developing a Protocol for Monitoring the Change in Composition and Utilisation of Large Trees , 2008, PloS one.

[57]  Harry Biggs,et al.  The Kruger Experience: Ecology And Management Of Savanna Heterogeneity , 2013 .

[58]  R. Jackson,et al.  Soil and Atmosphere Influences on the Spectra of Partial Canopies , 1988 .

[59]  Tanja S. Maier,et al.  Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories , 2014, Ecology and evolution.

[60]  C. Deutsch,et al.  Teacher's Aide Variogram Interpretation and Modeling , 2001 .

[61]  R. Scholes,et al.  Tree-grass interactions in Savannas , 1997 .

[62]  Onisimo Mutanga,et al.  Multi-phenology WorldView-2 imagery improves remote sensing of savannah tree species , 2017, Int. J. Appl. Earth Obs. Geoinformation.

[63]  R. J. Scholes,et al.  Leaf green-up in a semi-arid African savanna –separating tree and grass responses to environmental cues , 2007 .

[64]  Moses Azong Cho,et al.  Toward structural assessment of semi-arid African savannahs and woodlands: The potential of multitemporal polarimetric RADARSAT-2 fine beam images , 2013 .

[65]  A. Gonsamo,et al.  Measuring fractional forest canopy element cover and openness - definitions and methodologies revisited , 2013 .