The anti-sigma factor MucA of Pseudomonas aeruginosa: Dramatic differences of a mucA22 vs. a ΔmucA mutant in anaerobic acidified nitrite sensitivity of planktonic and biofilm bacteria in vitro and during chronic murine lung infection

Mucoid mucA22 Pseudomonas aeruginosa (PA) is an opportunistic lung pathogen of cystic fibrosis (CF) and chronic obstructive pulmonary disease (COPD) patients that is highly sensitive to acidified nitrite (A-NO2-). In this study, we first screened PA mutant strains for sensitivity or resistance to 20 mM A-NO2- under anaerobic conditions that represent the chronic stages of the aforementioned diseases. Mutants found to be sensitive to A-NO2- included PA0964 (pmpR, PQS biosynthesis), PA4455 (probable ABC transporter permease), katA (major catalase, KatA) and rhlR (quorum sensing regulator). In contrast, mutants lacking PA0450 (a putative phosphate transporter) and PA1505 (moaA2) were A-NO2- resistant. However, we were puzzled when we discovered that mucA22 mutant bacteria, a frequently isolated mucA allele in CF and to a lesser extent COPD, were more sensitive to A-NO2- than a truncated ΔmucA deletion (Δ157–194) mutant in planktonic and biofilm culture, as well as during a chronic murine lung infection. Subsequent transcriptional profiling of anaerobic, A-NO2--treated bacteria revealed restoration of near wild-type transcript levels of protective NO2- and nitric oxide (NO) reductase (nirS and norCB, respectively) in the ΔmucA mutant in contrast to extremely low levels in the A-NO2--sensitive mucA22 mutant. Proteins that were S-nitrosylated by NO derived from A-NO2- reduction in the sensitive mucA22 strain were those involved in anaerobic respiration (NirQ, NirS), pyruvate fermentation (UspK), global gene regulation (Vfr), the TCA cycle (succinate dehydrogenase, SdhB) and several double mutants were even more sensitive to A-NO2-. Bioinformatic-based data point to future studies designed to elucidate potential cellular binding partners for MucA and MucA22. Given that A-NO2- is a potentially viable treatment strategy to combat PA and other infections, this study offers novel developments as to how clinicians might better treat problematic PA infections in COPD and CF airway diseases.

[1]  O. Olatunji,et al.  Alginates , 2019 .

[2]  E. Julián,et al.  A single point mutation in class III ribonucleotide reductase promoter renders Pseudomonas aeruginosa PAO1 inefficient for anaerobic growth and infection , 2017, Scientific Reports.

[3]  E. Julián,et al.  A single point mutation in class III ribonucleotide reductase promoter renders Pseudomonas aeruginosa PAO1 inefficient for anaerobic growth and infection , 2017, Scientific Reports.

[4]  E. Torrents,et al.  Pseudomonas aeruginosa Exhibits Deficient Biofilm Formation in the Absence of Class II and III Ribonucleotide Reductases Due to Hindered Anaerobic Growth , 2016, Front. Microbiol..

[5]  Shengchang Su,et al.  A Putative ABC Transporter Permease Is Necessary for Resistance to Acidified Nitrite and EDTA in Pseudomonas aeruginosa under Aerobic and Anaerobic Planktonic and Biofilm Conditions , 2016, Front. Microbiol..

[6]  Raymond Lo,et al.  Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database , 2015, Nucleic Acids Res..

[7]  K. Timmis,et al.  A Periplasmic Complex of the Nitrite Reductase NirS, the Chaperone DnaK, and the Flagellum Protein FliC Is Essential for Flagellum Assembly and Motility in Pseudomonas aeruginosa , 2015, Journal of bacteriology.

[8]  F. Hildebrand,et al.  Genome Sequence of Mucoid Pseudomonas aeruginosa Strain FRD1 , 2015, Genome Announcements.

[9]  D. Wozniak,et al.  Complete Genome Sequence of Pseudomonas aeruginosa Mucoid Strain FRD1, Isolated from a Cystic Fibrosis Patient , 2015, Genome Announcements.

[10]  Garry R. Cutting,et al.  Cystic fibrosis genetics: from molecular understanding to clinical application , 2014, Nature Reviews Genetics.

[11]  R. Pawankar,et al.  Allergic diseases and asthma: a global public health concern and a call to action , 2014, The World Allergy Organization journal.

[12]  Shengchang Su,et al.  Catalase (KatA) Plays a Role in Protection against Anaerobic Nitric Oxide in Pseudomonas aeruginosa , 2014, PloS one.

[13]  S. Barnum,et al.  Erythrocyte storage increases rates of NO and nitrite scavenging: implications for transfusion-related toxicity. , 2012, The Biochemical journal.

[14]  Shengchang Su,et al.  Anaerobic Pseudomonas aeruginosa and other obligately anaerobic bacterial biofilms growing in the thick airway mucus of chronically infected cystic fibrosis patients: an emerging paradigm or “Old Hat”? , 2012, Expert opinion on therapeutic targets.

[15]  M. Adgent,et al.  Desferrioxamine inhibits protein tyrosine nitration: mechanisms and implications. , 2012, Free radical biology & medicine.

[16]  L. Lu,et al.  Prediction and Analysis of the Protein Interactome in Pseudomonas aeruginosa to Enable Network-Based Drug Target Selection , 2012, PloS one.

[17]  Alfred Hausladen,et al.  Endogenous Protein S-Nitrosylation in E. coli: Regulation by OxyR , 2012, Science.

[18]  J. Stamler,et al.  Enzymatic mechanisms regulating protein S-nitrosylation: implications in health and disease , 2012, Journal of Molecular Medicine.

[19]  M. Rodríguez-Carballeira,et al.  Pseudomonas aeruginosa and Mortality after Hospital Admission for Chronic Obstructive Pulmonary Disease , 2011, Respiration.

[20]  So Iwata,et al.  Structural Basis of Biological N2O Generation by Bacterial Nitric Oxide Reductase , 2010, Science.

[21]  J. Heesemann,et al.  Adaptation of Pseudomonas aeruginosa during persistence in the cystic fibrosis lung. , 2010, International journal of medical microbiology : IJMM.

[22]  J. Arthur,et al.  Gene expression of Pseudomonas aeruginosa in a mucin-containing synthetic growth medium mimicking cystic fibrosis lung sputum. , 2010, Journal of medical microbiology.

[23]  M. J. Pozuelo,et al.  Chronic colonization by Pseudomonas aeruginosa of patients with obstructive lung diseases: cystic fibrosis, bronchiectasis, and chronic obstructive pulmonary disease. , 2010, Diagnostic microbiology and infectious disease.

[24]  D. Hassett,et al.  Sodium Nitrite-Mediated Killing of the Major Cystic Fibrosis Pathogens Pseudomonas aeruginosa, Staphylococcus aureus, and Burkholderia cepacia under Anaerobic Planktonic and Biofilm Conditions , 2010, Antimicrobial Agents and Chemotherapy.

[25]  T. Tolker-Nielsen,et al.  Quorum Sensing and Virulence of Pseudomonas aeruginosa during Lung Infection of Cystic Fibrosis Patients , 2010, PloS one.

[26]  D. Hassett,et al.  Pseudomonas aeruginosa biofilm infections in cystic fibrosis: insights into pathogenic processes and treatment strategies , 2010, Expert opinion on therapeutic targets.

[27]  J. R. Lancaster,et al.  Dinitrosyliron complexes and the mechanism(s) of cellular protein nitrosothiol formation from nitric oxide , 2009, Proceedings of the National Academy of Sciences.

[28]  J. Lancaster,et al.  Nitric Oxide-induced Conversion of Cellular Chelatable Iron into Macromolecule-bound Paramagnetic Dinitrosyliron Complexes* , 2008, Journal of Biological Chemistry.

[29]  H. Schweizer,et al.  PBAD-Based Shuttle Vectors for Functional Analysis of Toxic and Highly Regulated Genes in Pseudomonas and Burkholderia spp. and Other Bacteria , 2008, Applied and Environmental Microbiology.

[30]  M. Surette,et al.  The YebC Family Protein PA0964 Negatively Regulates the Pseudomonas aeruginosa Quinolone Signal System and Pyocyanin Production , 2008, Journal of bacteriology.

[31]  J. Sarles,et al.  Molecular Detection of Multiple Emerging Pathogens in Sputa from Cystic Fibrosis Patients , 2008, PloS one.

[32]  M. Wolfgang,et al.  Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis. , 2008, American journal of respiratory and critical care medicine.

[33]  H. Arai,et al.  Transcriptional activity of Pseudomonas aeruginosa fhp promoter is dependent on two regulators in addition to FhpR , 2008, Archives of Microbiology.

[34]  A. Woodcock,et al.  Non-invasive biomarkers and pulmonary function in smokers , 2008, International journal of chronic obstructive pulmonary disease.

[35]  M. Lieberman,et al.  Proteomic, Microarray, and Signature-Tagged Mutagenesis Analyses of Anaerobic Pseudomonas aeruginosa at pH 6.5, Likely Representing Chronic, Late-Stage Cystic Fibrosis Airway Conditions , 2008, Journal of bacteriology.

[36]  M. Whiteley,et al.  Nutritional Cues Control Pseudomonas aeruginosa Multicellular Behavior in Cystic Fibrosis Sputum , 2007, Journal of bacteriology.

[37]  D. Hassett,et al.  Pseudomonas aeruginosa AlgR Represses the Rhl Quorum-Sensing System in a Biofilm-Specific Manner , 2007, Journal of bacteriology.

[38]  D. Hassett,et al.  Two‐pronged survival strategy for the major cystic fibrosis pathogen, Pseudomonas aeruginosa, lacking the capacity to degrade nitric oxide during anaerobic respiration , 2007, The EMBO journal.

[39]  D. Yates,et al.  Nitric Oxide and Exhaled Breath Nitrite/Nitrates in Chronic Obstructive Pulmonary Disease Patients , 2007, Respiration.

[40]  C. Harwood,et al.  Responses of Pseudomonas aeruginosa to low oxygen indicate that growth in the cystic fibrosis lung is by aerobic respiration , 2007, Molecular microbiology.

[41]  N. Roche Particularités des maladies respiratoires obstructives (asthme et BPCO) chez le sujet âgé , 2007 .

[42]  Dongru Qiu,et al.  Regulated proteolysis controls mucoid conversion in Pseudomonas aeruginosa , 2007, Proceedings of the National Academy of Sciences.

[43]  J. Klockgether,et al.  Sequence diversity of the mucABD locus in Pseudomonas aeruginosa isolates from patients with cystic fibrosis. , 2006, Microbiology.

[44]  A. J. Leech,et al.  Cell wall‐inhibitory antibiotics activate the alginate biosynthesis operon in Pseudomonas aeruginosa: roles of σ22 (AlgT) and the AlgW and Prc proteases , 2006, Molecular microbiology.

[45]  D. Wozniak,et al.  The AlgT-Dependent Transcriptional Regulator AmrZ (AlgZ) Inhibits Flagellum Biosynthesis in Mucoid, Nonmotile Pseudomonas aeruginosa Cystic Fibrosis Isolates , 2006, Journal of bacteriology.

[46]  M. Filiatrault,et al.  Identification of Pseudomonas aeruginosa Genes Involved in Virulence and Anaerobic Growth , 2006, Infection and Immunity.

[47]  D. Ohman,et al.  Independent Regulation of MucD, an HtrA-Like Protease in Pseudomonas aeruginosa, and the Role of Its Proteolytic Motif in Alginate Gene Regulation , 2006, Journal of bacteriology.

[48]  Fabien Campagne,et al.  SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[49]  D. Hassett,et al.  Anaerobic killing of mucoid Pseudomonas aeruginosa by acidified nitrite derivatives under cystic fibrosis airway conditions. , 2006, The Journal of clinical investigation.

[50]  M. Hentzer,et al.  Anaerobic Survival of Pseudomonas aeruginosa by Pyruvate Fermentation Requires an Usp-Type Stress Protein , 2006, Journal of bacteriology.

[51]  M. Tunney,et al.  Effect of oxygen limitation on the in vitro antimicrobial susceptibility of clinical isolates of Pseudomonas aeruginosa grown planktonically and as biofilms , 2005, European Journal of Clinical Microbiology and Infectious Diseases.

[52]  Masaharu Ishii,et al.  Transcriptional Regulation of the Flavohemoglobin Gene for Aerobic Nitric Oxide Detoxification by the Second Nitric Oxide-Responsive Regulator of Pseudomonas aeruginosa , 2005, Journal of bacteriology.

[53]  A. Torres,et al.  Microbiologic determinants of exacerbation in chronic obstructive pulmonary disease. , 2005, Archives of internal medicine.

[54]  S. Molin,et al.  Novel Mouse Model of Chronic Pseudomonas aeruginosa Lung Infection Mimicking Cystic Fibrosis , 2005, Infection and Immunity.

[55]  S. Lory,et al.  A novel two‐component system controls the expression of Pseudomonas aeruginosa fimbrial cup genes , 2004, Molecular microbiology.

[56]  G. Winsor,et al.  Anaerobic Metabolism by Pseudomonas aeruginosa in Cystic Fibrosis Airway , 2004 .

[57]  M. Schurr,et al.  Identification of AlgR-Regulated Genes in Pseudomonas aeruginosa by Use of Microarray Analysis , 2004, Journal of bacteriology.

[58]  D. Hassett,et al.  Transcriptome Analysis of Pseudomonas aeruginosa after Interaction with Human Airway Epithelial Cells , 2004, Infection and Immunity.

[59]  Garth D. Ehrlich,et al.  Oxygen Limitation Contributes to Antibiotic Tolerance of Pseudomonas aeruginosa in Biofilms , 2004, Antimicrobial Agents and Chemotherapy.

[60]  Richard C Boucher,et al.  Abnormal surface liquid pH regulation by cultured cystic fibrosis bronchial epithelium , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[61]  C. Hart,et al.  Bacterial Diversity in Cases of Lung Infection in Cystic Fibrosis Patients: 16S Ribosomal DNA (rDNA) Length Heterogeneity PCR and 16S rDNA Terminal Restriction Fragment Length Polymorphism Profiling , 2003, Journal of Clinical Microbiology.

[62]  G. O’Toole To Build a Biofilm , 2003, Journal of bacteriology.

[63]  George M. Hilliard,et al.  Anaerobic metabolism and quorum sensing by Pseudomonas aeruginosa biofilms in chronically infected cystic fibrosis airways: rethinking antibiotic treatment strategies and drug targets. , 2002, Advanced drug delivery reviews.

[64]  George M. Hilliard,et al.  Pseudomonas aeruginosa anaerobic respiration in biofilms: relationships to cystic fibrosis pathogenesis. , 2002, Developmental cell.

[65]  J. Dötsch,et al.  Reduction of neuronal and inducible nitric oxide synthase gene expression in patients with cystic fibrosis , 2002, European Archives of Oto-Rhino-Laryngology.

[66]  J. Costerton,et al.  Pseudomonas aeruginosa Displays Multiple Phenotypes during Development as a Biofilm , 2002, Journal of bacteriology.

[67]  Richard C Boucher,et al.  Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients. , 2002, The Journal of clinical investigation.

[68]  L. Rahme,et al.  A quorum sensing-associated virulence gene of Pseudomonas aeruginosa encodes a LysR-like transcription regulator with a unique self-regulatory mechanism , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[69]  Y. Igarashi,et al.  Two c-type cytochromes, NirM and NirC, encoded in the nir gene cluster of Pseudomonas aeruginosa act as electron donors for nitrite reductase. , 2001, Biochemical and biophysical research communications.

[70]  F. Ausubel,et al.  The roles of mucD and alginate in the virulence of Pseudomonas aeruginosa in plants, nematodes and mice , 2001, Molecular microbiology.

[71]  Solomon H. Snyder,et al.  The Biotin Switch Method for the Detection of S-Nitrosylated Proteins , 2001, Science's STKE.

[72]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[73]  Matthew R. Parsek,et al.  Quorum-sensing signals indicate that cystic fibrosis lungs are infected with bacterial biofilms , 2000, Nature.

[74]  P. Stewart,et al.  Quorum sensing in Pseudomonas aeruginosa controls expression of catalase and superoxide dismutase genes and mediates biofilm susceptibility to hydrogen peroxide , 1999, Molecular microbiology.

[75]  D. Hassett,et al.  Bacterioferritin A Modulates Catalase A (KatA) Activity and Resistance to Hydrogen Peroxide in Pseudomonas aeruginosa , 1999, Journal of bacteriology.

[76]  S. Molin,et al.  Mucoid conversion of Pseudomonas aeruginosa by hydrogen peroxide: a mechanism for virulence activation in the cystic fibrosis lung. , 1999, Microbiology.

[77]  L. T. McGrath,et al.  Oxidative stress during acute respiratory exacerbations in cystic fibrosis , 1999, Thorax.

[78]  Y. Igarashi,et al.  The nirQ gene, which is required for denitrification of Pseudomonas aeruginosa, can activate the RubisCO from Pseudomonas hydrogenothermophila. , 1998, Biochimica et biophysica acta.

[79]  D. Hassett,et al.  Phosphorylation-Independent Activity of the Response Regulators AlgB and AlgR in Promoting Alginate Biosynthesis in MucoidPseudomonas aeruginosa , 1998, Journal of bacteriology.

[80]  G. Herberth,et al.  Catalase, myeloperoxidase and hydrogen peroxide in cystic fibrosis. , 1998, The European respiratory journal.

[81]  B. Rubin,et al.  Nitric oxide metabolites in cystic fibrosis lung disease , 1998, Archives of disease in childhood.

[82]  V. Deretic,et al.  Pseudomonas aeruginosa in cystic fibrosis: role of mucC in the regulation of alginate production and stress sensitivity. , 1997, Microbiology.

[83]  E. Ujack,et al.  Positive correlation of algD transcription to lasB and lasA transcription by populations of Pseudomonas aeruginosa in the lungs of patients with cystic fibrosis , 1997, Infection and immunity.

[84]  D. Hassett Anaerobic production of alginate by Pseudomonas aeruginosa: alginate restricts diffusion of oxygen , 1996, Journal of bacteriology.

[85]  V. Deretic,et al.  Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. , 1996, Microbiological reviews.

[86]  V. Deretic,et al.  Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia , 1996 .

[87]  A. Chakrabarty,et al.  Sigma factor-anti-sigma factor interaction in alginate synthesis: inhibition of AlgT by MucA , 1996, Journal of bacteriology.

[88]  V. Deretic,et al.  Control of AlgU, a member of the sigma E-like family of stress sigma factors, by the negative regulators MucA and MucB and Pseudomonas aeruginosa conversion to mucoidy in cystic fibrosis , 1996, Journal of bacteriology.

[89]  V. Deretic,et al.  Two distinct loci affecting conversion to mucoidy in Pseudomonas aeruginosa in cystic fibrosis encode homologs of the serine protease HtrA , 1996, Journal of bacteriology.

[90]  A Fiechter,et al.  Isolation and characterization of a regulatory gene affecting rhamnolipid biosurfactant synthesis in Pseudomonas aeruginosa , 1994, Journal of bacteriology.

[91]  Schweizer Hd Small broad-host-range gentamycin resistance gene cassettes for site-specific insertion and deletion mutagenesis. , 1993 .

[92]  G. Caetano-Anollés,et al.  Amplifying DNA with arbitrary oligonucleotide primers. , 1993, PCR methods and applications.

[93]  J. Goldberg,et al.  A mutation in algN permits trans activation of alginate production by algT in Pseudomonas species , 1993, Journal of bacteriology.

[94]  J. Lancaster,et al.  EPR detection of heme and nonheme iron-containing protein nitrosylation by nitric oxide during rejection of rat heart allograft. , 1992, The Journal of biological chemistry.

[95]  N. Høiby,et al.  Role of alginate in infection with mucoid Pseudomonas aeruginosa in cystic fibrosis. , 1992, Thorax.

[96]  A. Thomson,et al.  Electron-paramagnetic-resonance and magnetic-circular-dichroism studies on the formate dehydrogenase-nitrate reductase particle from Pseudomonas aeruginosa. , 1987, The Biochemical journal.

[97]  G. Skjåk‐Braek,et al.  Monomer sequence and acetylation pattern in some bacterial alginates. , 1986, Carbohydrate research.

[98]  G. George,et al.  Electron-paramagnetic-resonance spectroscopy studies on the dissimilatory nitrate reductase from Pseudomonas aeruginosa. , 1984, The Biochemical journal.

[99]  J. Goldberg,et al.  Cloning and expression in Pseudomonas aeruginosa of a gene involved in the production of alginate , 1984, Journal of bacteriology.

[100]  J. Lancaster,et al.  Nitrite inhibition of Clostridium botulinum: electron spin resonance detection of iron-nitric oxide complexes. , 1983, Science.

[101]  A. Chakrabarty,et al.  Genetic mapping of chromosomal determinants for the production of the exopolysaccharide alginate in a Pseudomonas aeruginosa cystic fibrosis isolate , 1981, Infection and immunity.

[102]  A. Jeanes,et al.  A new modification of the carbazole analysis: application to heteropolysaccharides. , 1968, Analytical biochemistry.

[103]  B. Holloway Genetic recombination in Pseudomonas aeruginosa. , 1955, Journal of general microbiology.

[104]  M. Corradi,et al.  Nitric oxide synthase isoforms in lung parenchyma of patients with chronic obstructive pulmonary disease. , 2010, American journal of respiratory and critical care medicine.

[105]  J. Heesemann,et al.  Stage-specific adaptation of hypermutable Pseudomonas aeruginosa isolates during chronic pulmonary infection in patients with cystic fibrosis. , 2007, The Journal of infectious diseases.

[106]  N. Roche [Characteristics of obstructive respiratory diseases (asthma and COPD) in the elderly]. , 2007, Revue des maladies respiratoires.

[107]  E. Jassem,et al.  [Occurrence of non-spore forming anaerobic bacteria in the upper airways of patients with chronic obstructive pulmonary disease]. , 1996, Medycyna doswiadczalna i mikrobiologia.

[108]  H. Schweizer,et al.  An improved system for gene replacement and xylE fusion analysis in Pseudomonas aeruginosa. , 1995, Gene.

[109]  D. Martin,et al.  Mechanism of conversion to mucoidy in Pseudomonas aeruginosa infecting cystic fibrosis patients. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[110]  H. D. Schweizer Small broad-host-range gentamycin resistance gene cassettes for site-specific insertion and deletion mutagenesis. , 1993, BioTechniques.

[111]  J. Stamler,et al.  S-nitrosylation of proteins with nitric oxide: synthesis and characterization of biologically active compounds. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[112]  A. Pühler,et al.  A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria , 1983, Bio/Technology.