Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty.

Little is known about genes regulating male puberty. Further, while many identified pubertal timing variants associate with age at menarche, a late manifestation of puberty, and body mass, little is known about these variants' relationship to pubertal initiation or tempo. To address these questions, we performed genome-wide association meta-analysis in over 11 000 European samples with data on early pubertal traits, male genital and female breast development, measured by the Tanner scale. We report the first genome-wide significant locus for male sexual development upstream of myocardin-like 2 (MKL2) (P = 8.9 × 10(-9)), a menarche locus tagging a developmental pathway linking earlier puberty with reduced pubertal growth (P = 4.6 × 10(-5)) and short adult stature (p = 7.5 × 10(-6)) in both males and females. Furthermore, our results indicate that a proportion of menarche loci are important for pubertal initiation in both sexes. Consistent with epidemiological correlations between increased prepubertal body mass and earlier pubertal timing in girls, body mass index (BMI)-increasing alleles correlated with earlier breast development. In boys, some BMI-increasing alleles associated with earlier, and others with delayed, sexual development; these genetic results mimic the controversy in epidemiological studies, some of which show opposing correlations between prepubertal BMI and male puberty. Our results contribute to our understanding of the pubertal initiation program in both sexes and indicate that although mechanisms regulating pubertal onset in males and females may largely be shared, the relationship between body mass and pubertal timing in boys may be complex and requires further genetic studies.

[1]  P. Sullivan,et al.  Heritability and Genomics of Gene Expression in Peripheral Blood , 2014, Nature Genetics.

[2]  A. Fucic,et al.  Puberty dysregulation and increased risk of disease in adult life: possible modes of action. , 2014, Reproductive toxicology.

[3]  Fred A Wright,et al.  Sex differences in the human peripheral blood transcriptome , 2014, BMC Genomics.

[4]  Daniel L. Koller,et al.  Association of adiposity genetic variants with menarche timing in 92,105 women of European descent. , 2013, American journal of epidemiology.

[5]  R. Viner,et al.  Pubertal timing and adult obesity and cardiometabolic risk in women and men: a systematic review and meta-analysis , 2013, International Journal of Obesity.

[6]  Nicholas J Timpson,et al.  Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity. , 2013, Human molecular genetics.

[7]  Ross M. Fraser,et al.  Sex-stratified Genome-wide Association Studies Including 270,000 Individuals Show Sexual Dimorphism in Genetic Loci for Anthropometric Traits , 2013, PLoS genetics.

[8]  F. Biro,et al.  Identifying opportunities for cancer prevention during preadolescence and adolescence: puberty as a window of susceptibility. , 2013, The Journal of adolescent health : official publication of the Society for Adolescent Medicine.

[9]  Gary K. Chen,et al.  Genome-wide association study of age at menarche in African-American women. , 2013, Human molecular genetics.

[10]  A. Simeone,et al.  Embryonic defects and growth alteration in mice with homozygous disruption of the Patz1 gene , 2013, Journal of cellular physiology.

[11]  H. H. Hulshoff Pol,et al.  Longitudinal study of hormonal and physical development in young twins. , 2013, The Journal of clinical endocrinology and metabolism.

[12]  E. Demerath,et al.  Genetic risk for earlier menarche also influences peripubertal body mass index. , 2013, American journal of physical anthropology.

[13]  J. Hirschhorn,et al.  Synthesizing genome-wide association studies and expression microarray reveals novel genes that act in the human growth plate to modulate height. , 2012, Human molecular genetics.

[14]  Data production leads,et al.  An integrated encyclopedia of DNA elements in the human genome , 2012 .

[15]  Eurie L. Hong,et al.  Annotation of functional variation in personal genomes using RegulomeDB , 2012, Genome research.

[16]  ENCODEConsortium,et al.  An Integrated Encyclopedia of DNA Elements in the Human Genome , 2012, Nature.

[17]  A. Juul,et al.  The physiology and timing of male puberty , 2012, Current opinion in endocrinology, diabetes, and obesity.

[18]  P. Deloukas,et al.  Patterns of Cis Regulatory Variation in Diverse Human Populations , 2012, PLoS genetics.

[19]  Inês Barroso,et al.  A genome-wide association meta-analysis identifies new childhood obesity loci , 2012, Nature Genetics.

[20]  L. Peltonen,et al.  Pubertal Timing and Growth Influences Cardiometabolic Risk Factors in Adult Males and Females , 2012, Diabetes Care.

[21]  M. Elfving,et al.  Evaluation of self-assessment of pubertal maturation in boys and girls using drawings and orchidometer , 2012, Journal of pediatric endocrinology & metabolism : JPEM.

[22]  A. Körner,et al.  Effects of obesity on human sexual development , 2012, Nature Reviews Endocrinology.

[23]  M. McIntyre Adult stature, body proportions and age at menarche in the United States National Health and Nutrition Survey (NHANES) III , 2011, Annals of human biology.

[24]  David M. Evans,et al.  Adult height variants affect birth length and growth rate in children , 2011, Human molecular genetics.

[25]  M. McIntyre,et al.  Age and size at maturity in women: A norm of reaction? , 2011, American journal of human biology : the official journal of the Human Biology Council.

[26]  A. Ashworth,et al.  Familial concordance for age at menarche: analyses from the Breakthrough Generations Study. , 2011, Paediatric and perinatal epidemiology.

[27]  Jacob F. Degner,et al.  Sequence and Chromatin Accessibility Data Accurate Inference of Transcription Factor Binding from Dna Material Supplemental Open Access , 2022 .

[28]  Simon C. Potter,et al.  The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study , 2011, PLoS genetics.

[29]  Sven Bergmann,et al.  Methods for testing association between uncertain genotypes and quantitative traits. , 2011, Biostatistics.

[30]  Markus Perola,et al.  Metabonomic, transcriptomic, and genomic variation of a population cohort , 2010, Molecular systems biology.

[31]  Christian Gieger,et al.  Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies , 2010, Nature Genetics.

[32]  G. Abecasis,et al.  MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes , 2010, Genetic epidemiology.

[33]  Andrew P Morris,et al.  Meta-analysis of sex-specific genome-wide association studies , 2010, Genetic epidemiology.

[34]  David Handelsman,et al.  Molecular insights into androgen actions in male and female reproductive function from androgen receptor knockout models. , 2010, Human reproduction update.

[35]  Ayellet V. Segrè,et al.  Hundreds of variants clustered in genomic loci and biological pathways affect human height , 2010, Nature.

[36]  Tsun-Po Yang,et al.  Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies , 2010, Bioinform..

[37]  Ayellet V. Segrè,et al.  Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits , 2010, PLoS genetics.

[38]  Mark I. McCarthy,et al.  Distinct variants at LIN28B influence growth in height from birth to adulthood. , 2010, American journal of human genetics.

[39]  Philippe Froguel,et al.  Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight , 2010, Nature Genetics.

[40]  Tanya M. Teslovich,et al.  Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index , 2010 .

[41]  Reedik Mägi,et al.  GWAMA: software for genome-wide association meta-analysis , 2010, BMC Bioinformatics.

[42]  Yurii S. Aulchenko,et al.  ProbABEL package for genome-wide association analysis of imputed data , 2010, BMC Bioinformatics.

[43]  P. Donnelly,et al.  A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies , 2009, PLoS genetics.

[44]  D. Strachan,et al.  Genetic variation in LIN28B is associated with the timing of puberty. , 2009, Nature genetics.

[45]  E. Demerath,et al.  Meta-analysis of genome-wide association data identifies two loci influencing age at menarche , 2009, Nature Genetics.

[46]  D. Gudbjartsson,et al.  Genome-wide association study identifies sequence variants on 6q21 associated with age at menarche , 2009, Nature Genetics.

[47]  P. Ridker,et al.  Genome-wide association studies identify novel loci associated with age at menarche and age at natural menopause , 2009, Nature Genetics.

[48]  Mark I. McCarthy,et al.  Genetic Determinants of Height Growth Assessed Longitudinally from Infancy to Adulthood in the Northern Finland Birth Cohort 1966 , 2009, PLoS genetics.

[49]  G. Abecasis,et al.  Genotype imputation. , 2009, Annual review of genomics and human genetics.

[50]  R. Franco,et al.  PATZ1 gene has a critical role in the spermatogenesis and testicular tumours , 2008, The Journal of pathology.

[51]  F. Rasmussen,et al.  Genetics of Pubertal Timing and Its Associations With Relative Weight in Childhood and Adult Height: The Swedish Young Male Twins Study , 2008, Pediatrics.

[52]  R. Sharpe,et al.  Public Health Implications of Altered Puberty Timing , 2008, Pediatrics.

[53]  B. Browning,et al.  Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. , 2007, American journal of human genetics.

[54]  G. Abecasis,et al.  Family-based association tests for genomewide association scans. , 2007, American journal of human genetics.

[55]  M. Buckingham,et al.  The role of Pax genes in the development of tissues and organs: Pax3 and Pax7 regulate muscle progenitor cell functions. , 2007, Annual review of cell and developmental biology.

[56]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[57]  P. Donnelly,et al.  A new multipoint method for genome-wide association studies by imputation of genotypes , 2007, Nature Genetics.

[58]  F. Kraemer,et al.  Hormone-Sensitive Lipase Knockouts , 2006, Nutrition & metabolism.

[59]  Alexander E. Kel,et al.  TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes , 2005, Nucleic Acids Res..

[60]  J. Lappe,et al.  Accuracy of Pubertal Tanner Staging Self-Reporting , 2006, Journal of pediatric endocrinology & metabolism : JPEM.

[61]  C. Sisk,et al.  The neural basis of puberty and adolescence , 2004, Nature Neuroscience.

[62]  G. Chiumello,et al.  Thyroid function and puberty. , 2003, Journal of pediatric endocrinology & metabolism : JPEM.

[63]  A. Field,et al.  Self-assessment of pubertal stage in overweight children. , 2002, Pediatrics.

[64]  W. Rand,et al.  Recall of early menstrual history and menarcheal body size: after 30 years, how well do women remember? , 2002, American journal of epidemiology.

[65]  A. Fusco,et al.  PATZ Attenuates the RNF4-mediated Enhancement of Androgen Receptor-dependent Transcription* , 2002, The Journal of Biological Chemistry.

[66]  M. Palmert,et al.  Variation in the timing of puberty: clinical spectrum and genetic investigation. , 2001, The Journal of clinical endocrinology and metabolism.

[67]  C. Holm,et al.  Molecular mechanisms regulating hormone-sensitive lipase and lipolysis. , 2003, Annual review of nutrition.

[68]  M. Santoro,et al.  A Novel Member of the BTB/POZ Family, PATZ, Associates with the RNF4 RING Finger Protein and Acts as a Transcriptional Repressor* , 2000, The Journal of Biological Chemistry.

[69]  Masayuki Yamamoto,et al.  A Combinatorial Code for Gene Expression Generated by Transcription Factor Bach2 and MAZR (MAZ-Related Factor) through the BTB/POZ Domain , 2000, Molecular and Cellular Biology.

[70]  N. Yahagi,et al.  Targeted disruption of hormone-sensitive lipase results in male sterility and adipocyte hypertrophy, but not in obesity. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[71]  J M Tanner,et al.  Variations in the Pattern of Pubertal Changes in Boys , 1970, Archives of disease in childhood.

[72]  J M Tanner,et al.  Variations in pattern of pubertal changes in girls. , 1969, Archives of disease in childhood.