Cascaded multiple classifiers for secondary structure prediction
暂无分享,去创建一个
M Ouali | R D King | Ross D. King | M. Ouali | R. King | Mohammed Ouali | Ross D. King
[1] B. Robson,et al. Conformational properties of amino acid residues in globular proteins. , 1976, Journal of molecular biology.
[2] B. Rost,et al. A modified definition of Sov, a segment‐based measure for protein secondary structure prediction assessment , 1999, Proteins.
[3] P. Argos,et al. Seventy‐five percent accuracy in protein secondary structure prediction , 1997, Proteins.
[4] P. Argos,et al. Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence. , 1996, Protein engineering.
[5] William H. Press,et al. Numerical recipes in C. The art of scientific computing , 1987 .
[6] R. King,et al. Identification and application of the concepts important for accurate and reliable protein secondary structure prediction , 1996, Protein science : a publication of the Protein Society.
[7] P. Argos,et al. Quantification of secondary structure prediction improvement using multiple alignments. , 1993, Protein engineering.
[8] G J Barton,et al. Evaluation and improvement of multiple sequence methods for protein secondary structure prediction , 1999, Proteins.
[9] Leo Breiman,et al. Stacked regressions , 2004, Machine Learning.
[10] J. M. Levin,et al. Exploring the limits of nearest neighbour secondary structure prediction. , 1997, Protein engineering.
[11] Christus,et al. A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins , 2022 .
[12] K. Chou,et al. An optimization approach to predicting protein structural class from amino acid composition , 1992, Protein science : a publication of the Protein Society.
[13] S. Altschul,et al. Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[14] B. Robson,et al. Analysis of the code relating sequence to conformation in proteins: possible implications for the mechanism of formation of helical regions. , 1971, Journal of molecular biology.
[15] M. Karplus,et al. Protein secondary structure prediction with a neural network. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[16] B. Rost,et al. Redefining the goals of protein secondary structure prediction. , 1994, Journal of molecular biology.
[17] R Langridge,et al. Improvements in protein secondary structure prediction by an enhanced neural network. , 1990, Journal of molecular biology.
[18] Thomas G. Dietterich. Machine-Learning Research , 1997, AI Mag..
[19] David H. Wolpert,et al. Stacked generalization , 1992, Neural Networks.
[20] A A Salamov,et al. Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments. , 1995, Journal of molecular biology.
[21] Bruce E. Rosen,et al. Ensemble Learning Using Decorrelated Neural Networks , 1996, Connect. Sci..
[22] Thomas E. Creighton,et al. Protein folding by stages , 1992, Current Biology.
[23] R. Clemen. Combining forecasts: A review and annotated bibliography , 1989 .
[24] S. K. Riis,et al. Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments. , 1996, Journal of computational biology : a journal of computational molecular cell biology.
[25] K Zimmermann,et al. In unison: regularization of protein secondary structure predictions that makes use of multiple sequence alignments. , 1998, Protein engineering.
[26] Stephen Muggleton,et al. Protein secondary structure prediction using logic-based machine learning , 1992 .
[27] B. Rost,et al. Prediction of protein secondary structure at better than 70% accuracy. , 1993, Journal of molecular biology.
[28] T. Sejnowski,et al. Predicting the secondary structure of globular proteins using neural network models. , 1988, Journal of molecular biology.
[29] M J Sternberg,et al. Machine learning approach for the prediction of protein secondary structure. , 1990, Journal of molecular biology.
[30] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[31] Michael I. Jordan,et al. Hierarchical Mixtures of Experts and the EM Algorithm , 1994, Neural Computation.
[32] J. Gibrat,et al. GOR method for predicting protein secondary structure from amino acid sequence. , 1996, Methods in enzymology.
[33] V. Lim. Algorithms for prediction of α-helical and β-structural regions in globular proteins , 1974 .
[34] V. Lim. Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins. , 1974, Journal of molecular biology.
[35] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[36] J. Garnier,et al. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. , 1978, Journal of molecular biology.
[37] T Kawabata,et al. Improvement of protein secondary structure prediction using binary word encoding , 1997, Proteins.
[38] C Geourjon,et al. SOPM: a self-optimized method for protein secondary structure prediction. , 1994, Protein engineering.
[39] Anders Krogh,et al. Prediction of Beta Sheets in Proteins , 1995, NIPS.
[40] R J Fletterick,et al. Secondary structure assignment for alpha/beta proteins by a combinatorial approach. , 1983, Biochemistry.
[41] L. Cooper,et al. When Networks Disagree: Ensemble Methods for Hybrid Neural Networks , 1992 .
[42] F. Avbelj,et al. Role of main-chain electrostatics, hydrophobic effect and side-chain conformational entropy in determining the secondary structure of proteins. , 1998, Journal of molecular biology.
[43] David C. Jones,et al. CATH--a hierarchic classification of protein domain structures. , 1997, Structure.
[44] B. Matthews. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. , 1975, Biochimica et biophysica acta.
[45] Robert A. Jacobs,et al. Hierarchical Mixtures of Experts and the EM Algorithm , 1993, Neural Computation.
[46] C. Anfinsen. Principles that govern the folding of protein chains. , 1973, Science.
[47] M. Sternberg,et al. A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons. , 1987, Journal of molecular biology.
[48] Giovanni Soda,et al. Exploiting the past and the future in protein secondary structure prediction , 1999, Bioinform..
[49] C Sander,et al. The role of heat-shock and chaperone proteins in protein folding: possible molecular mechanisms. , 1991, Protein engineering.
[50] G. Rose,et al. Is protein folding hierarchic? I. Local structure and peptide folding. , 1999, Trends in biochemical sciences.
[51] B. Rost. PHD: predicting one-dimensional protein structure by profile-based neural networks. , 1996, Methods in enzymology.
[52] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[53] Heekuck Oh,et al. Neural Networks for Pattern Recognition , 1993, Adv. Comput..
[54] E. Lander,et al. Protein secondary structure prediction using nearest-neighbor methods. , 1993, Journal of molecular biology.
[55] A A Salamov,et al. Protein secondary structure prediction using local alignments. , 1997, Journal of molecular biology.
[56] Anders Krogh,et al. Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments , 1996, J. Comput. Biol..
[57] P. Y. Chou,et al. Prediction of protein conformation. , 1974, Biochemistry.
[58] D. Eisenberg. Three-dimensional structure of membrane and surface proteins. , 1984, Annual review of biochemistry.
[59] M. Sternberg,et al. Prediction of protein secondary structure and active sites using the alignment of homologous sequences. , 1987, Journal of molecular biology.
[60] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[61] D T Jones,et al. Protein secondary structure prediction based on position-specific scoring matrices. , 1999, Journal of molecular biology.
[62] J. Gibrat,et al. Secondary structure prediction: combination of three different methods. , 1988, Protein engineering.
[63] Thomas G. Dietterich. Machine-Learning Research Four Current Directions , 1997 .
[64] J. Gibrat,et al. Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs. , 1987, Journal of molecular biology.
[65] C. Epstein,et al. The Genetic Control of Tertiary Protein Structure: Studies With Model Systems , 1963 .
[66] A. Finkelstein,et al. Theory of protein secondary structure and algorithm of its prediction , 1983, Biopolymers.
[67] J. E. Glynn,et al. Numerical Recipes: The Art of Scientific Computing , 1989 .