Microchip electrophoresis-based separation of DNA.

Miniaturized instruments have developed very quickly in the last decade. This review is focused on the microchip electrophoresis-based separation of DNA. Fundamentals, including the chip format, substrates and fabrication technologies, fluid control, as well as various detection methods, are summarized. Array electrophoresis microchip and the on-chip integration of electrophoresis with other systems are introduced as well. In addition, the application of microchip electrophoresis in DNA sizing, genetic analysis and DNA sequencing are also presented in this paper.

[1]  Z. Rónai,et al.  DNA analysis on electrophoretic microchips: Effect of operational variables , 2001, Electrophoresis.

[2]  Andreas Manz,et al.  Chip-based microsystems for genomic and proteomic analysis , 2000 .

[3]  S. Hjertén,et al.  Electroosmosis- and pressure-driven chromatography in chips using continuous beds. , 2000, Analytical chemistry.

[4]  J P Landers,et al.  Miniaturized electrophoresis: an evolving role in laboratory medicine. , 2001, BioTechniques.

[5]  E. Carrilho,et al.  DNA sequencing by capillary array electrophoresis and microfabricated array systems , 2000, Electrophoresis.

[6]  M. Morris,et al.  Isotachophoretic separations on a microchip. Normal Raman spectroscopy detection. , 1998, Analytical chemistry.

[7]  R S Foote,et al.  Microchip device for cell lysis, multiplex PCR amplification, and electrophoretic sizing. , 1998, Analytical chemistry.

[8]  Igor L. Medintz,et al.  High‐performance genetic analysis using microfabricated capillary array electrophoresis microplates , 2001, Electrophoresis.

[9]  D. Bornhop,et al.  Quantification and evaluation of Joule heating in on‐chip capillary electrophoresis , 2002, Electrophoresis.

[10]  Iuliu I. Blaga,et al.  Automated parallel DNA sequencing on multiple channel microchips. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[11]  G. Whitesides,et al.  Fabrication of microfluidic systems in poly(dimethylsiloxane) , 2000, Electrophoresis.

[12]  J. Michael Ramsey,et al.  Dispersion Sources for Compact Geometries on Microchips , 1998 .

[13]  R. Oleschuk,et al.  Trapping of bead-based reagents within microfluidic systems: on-chip solid-phase extraction and electrochromatography , 2000, Analytical chemistry.

[14]  J P Landers,et al.  Acousto-optical deflection-based laser beam scanning for fluorescence detection on multichannel electrophoretic microchips. , 1999, Analytical chemistry.

[15]  Kurt Seiler,et al.  Electroosmotic Pumping and Valveless Control of Fluid Flow within a Manifold of Capillaries on a Glass Chip , 1994 .

[16]  A. Barron,et al.  Polymeric matrices for DNA sequencing by capillary electrophoresis , 2000, Electrophoresis.

[17]  R A Mathies,et al.  High-throughput genetic analysis using microfabricated 96-sample capillary array electrophoresis microplates. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[18]  A. Woolley,et al.  Ultra-high-speed DNA fragment separations using microfabricated capillary array electrophoresis chips. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[19]  D. Ehrlich,et al.  Two-color multiplexed analysis of eight short tandem repeat loci with an electrophoretic microdevice. , 1999, Analytical biochemistry.

[20]  A. Berg,et al.  Micro Total Analysis Systems , 1995 .

[21]  J P Landers,et al.  Rapid detection of deletion, insertion, and substitution mutations via heteroduplex analysis using capillary- and microchip-based electrophoresis. , 2000, Genome research.

[22]  Andreas Manz,et al.  Towards miniaturized electrophoresis and chemical analysis systems on silicon: an alternative to chemical sensors , 1993 .

[23]  Darwin R. Reyes,et al.  Micro total analysis systems. 1. Introduction, theory, and technology. , 2002, Analytical chemistry.

[24]  R. G. Christensen,et al.  Fabrication of plastic microfluid channels by imprinting methods. , 1997, Analytical chemistry.

[25]  J. W. Simpson,et al.  A transmission imaging spectrograph and microfabricated channel system for DNA analysis , 2000, Electrophoresis.

[26]  J P Landers,et al.  Single-strand conformation polymorphism analysis by capillary and microchip electrophoresis: a fast, simple method for detection of common mutations in BRCA1 and BRCA2. , 2000, Genomics.

[27]  N Tait,et al.  Fabrication of nanocolumns for liquid chromatography. , 1998, Analytical chemistry.

[28]  K. Young,et al.  Plastic microchip electrophoresis for analysis of PCR products of hepatitis C virus. , 1999, Clinical chemistry.

[29]  C S Effenhauser,et al.  Integrated chip‐based capillary electrophoresis , 1997, Electrophoresis.

[30]  D. J. Harrison,et al.  Capillary electrophoresis and sample injection systems integrated on a planar glass chip , 1992 .

[31]  Albert van den Berg,et al.  Silicon microtechnology and microstructures in separation science , 1998 .

[32]  V. Dolnik,et al.  Capillary electrophoresis on microchip , 2000, Electrophoresis.

[33]  N Gottschlich,et al.  Two-dimensional electrochromatography/capillary electrophoresis on a microchip. , 2001, Analytical chemistry.

[34]  E. Verpoorte Microfluidic chips for clinical and forensic analysis , 2002, Electrophoresis.

[35]  P. McEwan,et al.  Eight hundred-base sequencing in a microfabricated electrophoretic device. , 2000, Analytical chemistry.

[36]  D. Ehrlich,et al.  Microchip electrophoresis: a method for high-speed SNP detection. , 2000, Nucleic acids research.

[37]  Jörg Peter Kutter,et al.  Current developments in electrophoretic and chromatographic separation methods on microfabricated devices , 2000 .

[38]  J. Alarie,et al.  Effects of the electric field distribution on microchip valving performance , 2000, Electrophoresis.

[39]  G. Whitesides,et al.  Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane). , 1998, Analytical chemistry.

[40]  Igor L. Medintz,et al.  Single-molecule DNA amplification and analysis in an integrated microfluidic device. , 2001, Analytical chemistry.

[41]  A. Woolley,et al.  Ultra-high-speed DNA sequencing using capillary electrophoresis chips. , 1995, Analytical chemistry.

[42]  D. J. Harrison,et al.  Clinical potential of microchip capillary electrophoresis systems , 1997, Electrophoresis.

[43]  A Scherer,et al.  A microfabricated device for sizing and sorting DNA molecules. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[44]  C. Colyer,et al.  Integration of microfabricated devices to capillary electrophoresis-electrospray mass spectrometry using a low dead volume connection: application to rapid analyses of proteolytic digests. , 1999, Analytical chemistry.

[45]  M. A. Northrup,et al.  Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. , 1996, Analytical chemistry.

[46]  B. Karger,et al.  High-throughput microfabricated CE/ESI-MS: automated sampling from a microwell plate. , 2001, Analytical chemistry.

[47]  Richard A Mathies,et al.  High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[48]  S. Jacobson,et al.  High-Speed Separations on a Microchip , 1994 .

[49]  Andreas Manz,et al.  High-Speed Separation of Antisense Oligonucleotides on a Micromachined Capillary Electrophoresis Device , 1994 .

[50]  A. Manz,et al.  Miniaturized total chemical analysis systems: A novel concept for chemical sensing , 1990 .

[51]  Zhili Huang,et al.  A method for UV‐bonding in the fabrication of glass electrophoretic microchips , 2001, Electrophoresis.

[52]  J. Landers,et al.  Electrokinetic injection for stacking neutral analytes in capillary and microchip electrophoresis. , 2001, Analytical chemistry.

[53]  Osamu Tabata,et al.  Imaging of a band for DNA fragment migrating in microchannel on integrated microchip , 2000 .

[54]  S. Jacobson,et al.  Integrated system for rapid PCR-based DNA analysis in microfluidic devices. , 2000, Analytical chemistry.

[55]  Koji Otsuka,et al.  Sweeping on a microchip: Concentration profiles of the focused zone in micellar electrokinetic chromatography , 2001, Electrophoresis.

[56]  F. Švec,et al.  Monolithic porous polymer for on-chip solid-phase extraction and preconcentration prepared by photoinitiated in situ polymerization within a microfluidic device. , 2001, Analytical chemistry.

[57]  Brian N. Johnson,et al.  An integrated nanoliter DNA analysis device. , 1998, Science.

[58]  A Paulus,et al.  Rapid, parallel separations of d1S80 alleles in a plastic microchannel chip. , 2000, Journal of chromatography. A.

[59]  L. Ziaugra,et al.  DNA sequencing on microfabricated electrophoretic devices. , 1998, Analytical chemistry.

[60]  S. Lunte,et al.  Microchip electrophoretic separation systems for biomedical and pharmaceutical analysis. , 2001, European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences.

[61]  A. Woolley,et al.  High-speed DNA genotyping using microfabricated capillary array electrophoresis chips. , 1997, Analytical chemistry.

[62]  H Nakanishi,et al.  Field‐inversion electrophoresis on a microchip device , 2001, Electrophoresis.

[63]  Igor L. Medintz,et al.  High speed single nucleotide polymorphism typing of a hereditary haemochromatosis mutation with capillary array electrophoresis microplates , 2000, Electrophoresis.

[64]  S. Jacobson,et al.  Integrated microdevice for DNA restriction fragment analysis. , 1996, Analytical chemistry.

[65]  P. Matsudaira,et al.  Recent developments in DNA sequencing by capillary and microdevice electrophoresis , 1999, Electrophoresis.

[66]  Carlos H. Mastrangelo,et al.  A novel strategy for the design of multiple reaction systems for genetic analysis , 2002 .

[67]  J P Landers,et al.  Capillary and microchip electrophoresis for rapid detection of known mutations by combining allele-specific DNA amplification with heteroduplex analysis. , 2001, Clinical chemistry.

[68]  Feng Xu,et al.  Analysis of DNA polymorphisms on the human Y‐chromosome by microchip electrophoresis , 2002, Electrophoresis.

[69]  C Gärtner,et al.  Polymer microfabrication methods for microfluidic analytical applications , 2000, Electrophoresis.

[70]  K Watanabe,et al.  RNA chip: quality assessment of RNA by microchannel linear gel electrophoresis in injection-molded plastic chips. , 1998, Clinical chemistry.

[71]  Gregor Ocvirk,et al.  Integrated microfluidic electrophoresis system for analysis of genetic materials using signal amplification methods. , 2002, Analytical chemistry.

[72]  Y. Baba Development of novel biomedicine based on genome science. , 2001, European journal of pharmaceutical sciences : official journal of the European Federation for Pharmaceutical Sciences.

[73]  Igor L. Medintz,et al.  High-performance multiplex SNP analysis of three hemochromatosis-related mutations with capillary array electrophoresis microplates. , 2001, Genome research.

[74]  R. Pal,et al.  Microfabricated reaction and separation systems. , 2001, Current Opinion in Biotechnology.

[75]  B. Mohammadi,et al.  Optimization of turn geometries for microchip electrophoresis , 2001 .

[76]  A. Ricco,et al.  Peer Reviewed: Plastic Advances Microfluidic Devices , 2002 .

[77]  J. Ramsey,et al.  Generating electrospray from microchip devices using electroosmotic pumping. , 1997, Analytical chemistry.

[78]  Darwin R. Reyes,et al.  Micro total analysis systems. 2. Analytical standard operations and applications. , 2002, Analytical chemistry.

[79]  R. Mathies,et al.  Radial capillary array electrophoresis microplate and scanner for high-performance nucleic acid analysis. , 1999, Analytical chemistry.

[80]  D. J. Harrison,et al.  Microfabrication of a Planar Absorbance and Fluorescence Cell for Integrated Capillary Electrophoresis Devices , 1996 .

[81]  S. Jacobson,et al.  Microchip electrophoresis with sample stacking , 1995, Electrophoresis.

[82]  Martin A. M. Gijs,et al.  Powder blasting for the realisation of microchips for bio-analytic applications , 2001 .

[83]  S. Lunte,et al.  Microchip capillary electrophoresis/ electrochemistry , 2001, Electrophoresis.

[84]  J. Zahn,et al.  Microchannel DNA sequencing matrices with a thermally controlled "viscosity switch". , 2001, Analytical chemistry.

[85]  D. J. Harrison,et al.  Effects of injector geometry and sample matrix on injection and sample loading in integrated capillary electrophoresis devices , 1999, Electrophoresis.

[86]  P. Grodzinski,et al.  Microfabricated polycarbonate CE devices for DNA analysis. , 2001, Analytical chemistry.

[87]  Q Gao,et al.  Multiple-channel microchips for high-throughput DNA analysis by capillary electrophoresis , 2001, Fresenius' journal of analytical chemistry.

[88]  Lihua Zhang,et al.  Stepwise gradient of linear polymer matrices in microchip electrophoresis for high‐resolution separation of DNA , 2002, Electrophoresis.

[89]  J P Landers,et al.  Molecular diagnostics on microfabricated electrophoretic devices: from slab gel- to capillary- to microchip-based assays for T- and B-cell lymphoproliferative disorders. , 1999, Clinical chemistry.

[90]  D. Schmalzing,et al.  Recent advances in DNA sequencing by capillary and microdevice electrophoresis , 2001, Electrophoresis.

[91]  K. A. Wolfe,et al.  Toward a microchip‐based solid‐phase extraction method for isolation of nucleic acids , 2002, Electrophoresis.

[92]  Swinney,et al.  Chip-scale universal detection based on backscatter interferometry , 2000, Analytical chemistry.

[93]  H Nakanishi,et al.  Fabrication of quartz microchips with optical slit and development of a linear imaging UV detector for microchip electrophoresis systems , 2001, Electrophoresis.

[94]  J. Khandurina,et al.  Bioanalysis in microfluidic devices. , 2002, Journal of chromatography. A.

[95]  R A Mathies,et al.  Optimization of high-speed DNA sequencing on microfabricated capillary electrophoresis channels. , 1999, Analytical chemistry.

[96]  Stephen C. Jacobson,et al.  Open channel electrochromatography on a microchip , 1994 .

[97]  G. Bruin,et al.  Recent developments in electrokinetically driven analysis on microfabricated devices , 2000, Electrophoresis.

[98]  A. Manz,et al.  Micellar electrokinetic chromatography separations and analyses of biological samples on a cyclic planar microstructure. , 1996, Analytical chemistry.

[99]  J. Michael Ramsey,et al.  Effects of injection schemes and column geometry on the performance of microchip electrophoresis devices , 1994 .

[100]  Harrison Dj,et al.  Chemiluminescence detection in integrated post‐separation reactors for microchip‐based capillary electrophoresis and affinity electrophoresis , 1998 .