Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.

[1]  G. Perry.  The Promise and Practicality of Population Genomics Research with Endangered Species , 2014, International Journal of Primatology.

[2]  S. Goodman,et al.  Bird fossils from Ankilitelo Cave: inference about Holocene environmental changes in southwestern Madagascar. , 2013, Zootaxa.

[3]  G. Perry,et al.  Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar , 2013, Proceedings of the National Academy of Sciences.

[4]  L. Godfrey,et al.  Why all those spines?: Anachronistic defences in the Didiereoideae against now extinct lemurs , 2013 .

[5]  S. Goodman,et al.  New Directions in Lemur Studies , 2012, Springer US.

[6]  R. Dewar,et al.  Madagascar: A History of Arrivals, What Happened, and Will Happen Next* , 2012 .

[7]  N. Dominy,et al.  Extinction and ecological retreat in a community of primates , 2012, Proceedings of the Royal Society B: Biological Sciences.

[8]  M. Suchard,et al.  Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.

[9]  Stefan Schouten,et al.  Multiproxy record of abrupt sea-surface cooling across the Eocene- Oligocene transition in the Gulf of Mexico , 2012 .

[10]  Mark Stoneking,et al.  Learning about human population history from ancient and modern genomes , 2011, Nature Reviews Genetics.

[11]  E. Dumont,et al.  Thinking outside the box: A lemur's take on hominin craniodental evolution , 2011, Proceedings of the National Academy of Sciences.

[12]  M. Irwin,et al.  A glance to the past: subfossils, stable isotopes, seed dispersal, and lemur species loss in Southern Madagascar , 2011, American journal of primatology.

[13]  B. Crowley.  A refined chronology of prehistoric Madagascar and the demise of the megafauna , 2010 .

[14]  W. Jungers,et al.  "Life history space": a multivariate analysis of life history variation in extant and extinct Malagasy lemurs. , 2010, American journal of physical anthropology.

[15]  Matthias Meyer,et al.  Illumina sequencing library preparation for highly multiplexed target capture and sequencing. , 2010, Cold Spring Harbor protocols.

[16]  K. Muldoon.  Paleoenvironment of Ankilitelo Cave (late Holocene, southwestern Madagascar): implications for the extinction of giant lemurs. , 2010, Journal of human evolution.

[17]  O. Gascuel,et al.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.

[18]  E. Simons,et al.  The Subfossil Occurrence and Paleoecological Significance of Small Mammals at Ankilitelo Cave, Southwestern Madagascar , 2009 .

[19]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[20]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[21]  R. S. Scott,et al.  Dental microwear texture analysis of two families of subfossil lemurs from Madagascar. , 2009, Journal of human evolution.

[22]  J. Maguire,et al.  Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing , 2009, Nature Biotechnology.

[23]  C. Millar,et al.  New developments in ancient genomics. , 2008, Trends in ecology & evolution.

[24]  M. Suchard,et al.  Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. , 2008, Molecular biology and evolution.

[25]  Ludovic Orlando,et al.  DNA from extinct giant lemurs links archaeolemurids to extant indriids , 2008, BMC Evolutionary Biology.

[26]  Compton J. Tucker,et al.  Fifty years of deforestation and forest fragmentation in Madagascar , 2007, Environmental Conservation.

[27]  Philip L. F. Johnson,et al.  Patterns of damage in genomic DNA sequences from a Neandertal , 2007, Proceedings of the National Academy of Sciences.

[28]  M. Irwin,et al.  The Evolution of Extinction Risk: Past and Present Anthropogenic Impacts on the Primate Communities of Madagascar , 2007, Folia Primatologica.

[29]  E. Seiffert.  Evolution and Extinction of Afro-Arabian Primates Near the Eocene-Oligocene Boundary , 2007, Folia Primatologica.

[30]  B. MacFadden,et al.  Large temperature drop across the Eocene–Oligocene transition in central North America , 2007, Nature.

[31]  Andrew Kitchen,et al.  Comment on "Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals" , 2006, Science.

[32]  M. Benton,et al.  Paleontological evidence to date the tree of life. , 2006, Molecular biology and evolution.

[33]  Nicolas Galtier,et al.  Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals , 2006, Science.

[34]  S. Ho,et al.  Relaxed Phylogenetics and Dating with Confidence , 2006, PLoS biology.

[35]  Ventura R. Pérez,et al.  Evidence of early butchery of giant lemurs in Madagascar. , 2005, Journal of human evolution.

[36]  W. Jungers,et al.  Dental development in Megaladapis edwardsi (Primates, Lemuriformes): implications for understanding life history variation in subfossil lemurs. , 2005, Journal of human evolution.

[37]  E. L. Simons,et al.  Morphometric analysis of lumbar vertebrae in extinct Malagasy strepsirrhines. , 2005, American journal of physical anthropology.

[38]  R. Frankham.  Genetics and extinction , 2005 .

[39]  J. Zachos,et al.  Carbon cycle feedbacks and the initiation of Antarctic glaciation in the earliest Oligocene , 2005 .

[40]  Thomas J Parsons,et al.  Ancient DNA from giant extinct lemurs confirms single origin of Malagasy primates. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[41]  E. Simons,et al.  Dental use wear in extinct lemurs: evidence of diet and niche differentiation. , 2004, Journal of human evolution.

[42]  Henry T. Wright,et al.  A chronology for late prehistoric Madagascar. , 2004, Journal of human evolution.

[43]  Rodrigo Lopez,et al.  Multiple sequence alignment with the Clustal series of programs , 2003, Nucleic Acids Res..

[44]  C. Aquadro,et al.  Brief communication: ancient DNA prospects from Sri Lankan highland dry caves support an emerging global pattern. , 2003, American journal of physical anthropology.

[45]  Y. Attia,et al.  Fossil evidence for an ancient divergence of lorises and galagos , 2003, Nature.

[46]  W. Jungers,et al.  Molar microwear of subfossil lemurs: improving the resolution of dietary inferences. , 2002, Journal of human evolution.

[47]  K. Katoh,et al.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. , 2002, Nucleic acids research.

[48]  Adoum H. Mahamat,et al.  A new hominid from the Upper Miocene of Chad, Central Africa , 2002, Nature.

[49]  E. Simons,et al.  Dental microstructure and life history in subfossil Malagasy lemurs , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[50]  A. Yoder.  Ancient DNA from Megaladapis edwardsi , 2001, Folia Primatologica.

[51]  Y. Haile-Selassie.  Late Miocene hominids from the Middle Awash, Ethiopia , 2001, Nature.

[52]  U. Thalmann.  Food Resource Characteristics in Two Nocturnal Lemurs with Different Social Behavior: Avahi occidentalis and Lepilemur edwardsi , 2001, International Journal of Primatology.

[53]  Y. Rumpler,et al.  Ancient DNA from Megaladapis edwardsi (Malagasy Subfossil): Preliminary Results Using Partial Cytochrome b Sequence , 2001, Folia Primatologica.

[54]  L. Ivany,et al.  Cooler winters as a possible cause of mass extinctions at the Eocene/Oligocene boundary , 2000, Nature.

[55]  T. Brooks,et al.  Hotspots Revisited: Earth's Biologically Richest and Most Endangered Terrestrial Ecoregions , 2000 .

[56]  P. Wright,et al.  Diversity components of impending primate extinctions. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[57]  C. Wall.  The expanded mandibular condyle of the Megaladapidae. , 1997, American journal of physical anthropology.

[58]  R. J. Smith,et al.  Body mass in comparative primatology. , 1997, Journal of human evolution.

[59]  R. Frankham.  Relationship of genetic variation to population size in wildlife , 1996 .

[60]  E. Simons,et al.  AMS 14C Dates for Extinct Lemurs from Caves in the Ankarana Massif, Northern Madagascar , 1995, Quaternary Research.

[61]  Y. Rumpler,et al.  Molecular biology and systematics of an extinct Lemur:Pachylemur insignis , 1994, Primates.

[62]  R. Macphee,et al.  Dating of Modified Femora of Extinct Dwarf Hippopotamus from Southern Madagascar : Implications for Constraining Human Colonization and Vertebrate Extinction Events , 1991 .

[63]  N. A. Wells,et al.  Early Holocene chronology and environment of Ampasambazimba, A Malagasy subfossil lemur site , 1985, International Journal of Primatology.

[64]  R. Peters.  The Ecological Implications of Body Size , 1983 .

[65]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[66]  B. Shapiro,et al.  Case study: ancient DNA recovered from pleistocene-age remains of a Florida armadillo. , 2012, Methods in molecular biology.

[67]  Martin Kircher,et al.  Analysis of high-throughput ancient DNA sequencing data. , 2012, Methods in molecular biology.

[68]  N. Rohland.  DNA extraction of ancient animal hard tissue samples via adsorption to silica particles. , 2012, Methods in molecular biology.

[69]  W. Jungers,et al.  Life History Variation in Madagascar’s Giant Extinct Lemurs , 2012 .

[70]  G. Dietl,et al.  Conservation paleobiology: putting the dead to work. , 2011, Trends in ecology & evolution.

[71]  Christopher Bronk Ramsey,et al.  BAYESIAN ANALYSIS OF RADIOCARBON DATES , 2009 .

[72]  B. Demes,et al.  How Big Were the "Giant" Extinct Lemurs of Madagascar? , 2008 .

[73]  Stephen R. Frost.  African Pliocene and Pleistocene cercopithecid evolution and global climatic change , 2007 .

[74]  C E Buck,et al.  Shcal04 Southern Hemisphere Calibration, 0–11.0 Cal Kyr BP , 2004, Radiocarbon.

[75]  T. Parsons,et al.  Ancient DNA in Subfossil Lemurs , 1999 .

[76]  D. Burney.  Rates, Patterns, and Processes of Landscape Transformation and Extinction in Madagascar , 1999 .

[77]  C. Marshall,et al.  Mass Extinctions and Their Aftermath , 1997 .

[78]  E. Simons,et al.  AMS Dates on Extinct Lemurs from Caves in the Ankarana Massif of Northern Madagascar , 1995 .

[79]  M. Leakey.  Theropithecus: Evolution of Theropithecus in the Turkana Basin , 1993 .

[80]  I. Tattersall,et al.  Craniodental morphology and the systematics of the Malagasy lemurs (Primates, Prosimii). Anthropological papers of the AMNH ; v. 52, pt. 3 , 1974 .