Alternative Splicing in the Mammalian Nervous System: Recent Insights into Mechanisms and Functional Roles
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[1] D L Black,et al. Does steric interference between splice sites block the splicing of a short c-src neuron-specific exon in non-neuronal cells? , 1991, Genes & development.
[2] Paul Greengard,et al. Cell type–specific mRNA purification by translating ribosome affinity purification (TRAP) , 2014, Nature Protocols.
[3] J. Tapia,et al. Single-Cell Identity Generated by Combinatorial Homophilic Interactions between α, β, and γ Protocadherins , 2014, Cell.
[4] B. Porse,et al. The functional consequences of intron retention: alternative splicing coupled to NMD as a regulator of gene expression. , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.
[5] Bernd Fritzsch,et al. A Mutation in the Srrm4 Gene Causes Alternative Splicing Defects and Deafness in the Bronx Waltzer Mouse , 2012, PLoS genetics.
[6] Jernej Ule,et al. Understanding splicing regulation through RNA splicing maps , 2011, Trends in genetics : TIG.
[7] Natasa Przulj,et al. High-Throughput Mapping of a Dynamic Signaling Network in Mammalian Cells , 2005, Science.
[8] Qun Pan,et al. Cross-regulation between an alternative splicing activator and a transcription repressor controls neurogenesis. , 2011, Molecular cell.
[9] Donny D. Licatalosi,et al. RNA processing and its regulation: global insights into biological networks , 2010, Nature Reviews Genetics.
[10] Mei Zhen,et al. Networking in a global world: establishing functional connections between neural splicing regulators and their target transcripts. , 2011, RNA.
[11] J. Ule,et al. Protein–RNA interactions: new genomic technologies and perspectives , 2012, Nature Reviews Genetics.
[12] Jernej Ule,et al. A global regulatory mechanism for activating an exon network required for neurogenesis. , 2014, Molecular cell.
[13] N. Landsberger,et al. LSD1 Neurospecific Alternative Splicing Controls Neuronal Excitability in Mouse Models of Epilepsy. , 2015, Cerebral cortex.
[14] Raika Pancaroglu,et al. LRRTMs and Neuroligins Bind Neurexins with a Differential Code to Cooperate in Glutamate Synapse Development , 2010, The Journal of Neuroscience.
[15] A. Verma. Rescue of the spinal muscular atrophy phenotype in a mouse model by early postnatal delivery of SMN , 2011 .
[16] B. Frey,et al. Functional coordination of alternative splicing in the mammalian central nervous system , 2007, Genome Biology.
[17] A. Mele,et al. Neuronal Elav-like (Hu) Proteins Regulate RNA Splicing and Abundance to Control Glutamate Levels and Neuronal Excitability , 2012, Neuron.
[18] C. Burge,et al. Origins and impacts of new mammalian exons. , 2015, Cell reports.
[19] Jernej Ule,et al. RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing , 2013, Genome Biology.
[20] Nihon Hassei Seibutsu Gakkai,et al. Genes to cells , 1996 .
[21] Benjamin J. Blencowe,et al. Dynamic Integration of Splicing within Gene Regulatory Pathways , 2013, Cell.
[22] S. Brenner,et al. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements , 2007, Nature.
[23] T. Maniatis,et al. An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex , 2014, The Journal of Neuroscience.
[24] Gene W. Yeo,et al. Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping. , 2009, Molecular cell.
[25] L. Hersh,et al. Protein Kinase A Regulates Cholinergic Gene Expression in PC12 Cells: REST4 Silences the Silencing Activity of Neuron-Restrictive Silencer Factor/REST , 1999, Molecular and Cellular Biology.
[26] K. Nakayama,et al. Identification and characterization of a neuron‐specific isoform of protrudin , 2014, Genes to cells : devoted to molecular & cellular mechanisms.
[27] D. Schreiner,et al. Targeted Combinatorial Alternative Splicing Generates Brain Region-Specific Repertoires of Neurexins , 2014, Neuron.
[28] J. Ule,et al. Common Molecular Pathways Mediate Long-Term Potentiation of Synaptic Excitation and Slow Synaptic Inhibition , 2005, Cell.
[29] J. Ule,et al. Evolution of Nova-Dependent Splicing Regulation in the Brain , 2007, PLoS genetics.
[30] Adrian R. Krainer,et al. Peripheral SMN restoration is essential for long-term rescue of a severe SMA mouse model , 2011, Nature.
[31] B. Frey,et al. The human splicing code reveals new insights into the genetic determinants of disease , 2015, Science.
[32] M. Furuno,et al. Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1 , 2011, Genes to cells : devoted to molecular & cellular mechanisms.
[33] D. Licatalosi,et al. Integrative Modeling Defines the Nova Splicing-Regulatory Network and Its Combinatorial Controls , 2010, Science.
[34] M. Kondo,et al. Homophilic Dscam Interactions Control Complex Dendrite Morphogenesis , 2007, Neuron.
[35] Michael Q. Zhang,et al. Factors Fox-1 and Fox-2 Defining the Regulatory Network of the Tissue-specific Splicing Material Supplemental , 2009 .
[36] Donny D. Licatalosi,et al. Splicing Regulation in Neurologic Disease , 2006, Neuron.
[37] Panagiotis K. Papasaikas,et al. Functional splicing network reveals extensive regulatory potential of the core spliceosomal machinery. , 2014, Molecular cell.
[38] E. Makeyev,et al. Regulation of gene expression in mammalian nervous system through alternative pre-mRNA splicing coupled with RNA quality control mechanisms , 2013, Molecular and Cellular Neuroscience.
[39] Brendan J. Frey,et al. Deciphering the splicing code , 2010, Nature.
[40] John A. Calarco,et al. Regulation of Vertebrate Nervous System Alternative Splicing and Development by an SR-Related Protein , 2009, Cell.
[41] B. Blencowe,et al. Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development , 2015, Genes & development.
[42] C. Sabatti,et al. Robust discrimination between self and non-self neurites requires thousands of Dscam1 isoforms , 2009, Nature.
[43] Thomas C. Südhof,et al. LRRTM2 Functions as a Neurexin Ligand in Promoting Excitatory Synapse Formation , 2009, Neuron.
[44] Yi Zhang,et al. Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits , 2013, Cell.
[45] J. Fak,et al. Rescuing Z+ agrin splicing in Nova null mice restores synapse formation and unmasks a physiologic defect in motor neuron firing , 2009, Proceedings of the National Academy of Sciences.
[46] C. Burge,et al. Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues , 2012, Science.
[47] R. Darnell,et al. The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[48] S. Zipursky,et al. Probabilistic Splicing of Dscam1 Establishes Identity at the Level of Single Neurons , 2013, Cell.
[49] M. Ares,et al. Muscleblind-like 2-Mediated Alternative Splicing in the Developing Brain and Dysregulation in Myotonic Dystrophy , 2012, Neuron.
[50] J. Mattick,et al. The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing , 2014, Molecular Psychiatry.
[51] Michael Q. Zhang,et al. HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism. , 2014, Cell reports.
[52] B. Chen,et al. The Molecular Diversity of Dscam Is Functionally Required for Neuronal Wiring Specificity in Drosophila , 2006, Cell.
[53] Xinchen Wang,et al. Tissue-specific alternative splicing remodels protein-protein interaction networks. , 2012, Molecular cell.
[54] D. Black,et al. A broadly applicable high-throughput screening strategy identifies new regulators of Dlg4 (Psd-95) alternative splicing , 2013, Genome research.
[55] Alex Bateman,et al. Tissue-Specific Splicing of Disordered Segments that Embed Binding Motifs Rewires Protein Interaction Networks , 2012, Molecular cell.
[56] J. Fak,et al. NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure , 2013, eLife.
[57] Robert J. Weatheritt,et al. A Highly Conserved Program of Neuronal Microexons Is Misregulated in Autistic Brains , 2014, Cell.
[58] T. Südhof,et al. High Affinity Neurexin Binding to Cell Adhesion G-protein-coupled Receptor CIRL1/Latrophilin-1 Produces an Intercellular Adhesion Complex , 2012, The Journal of Biological Chemistry.
[59] Christopher J. Oldfield,et al. Classification of Intrinsically Disordered Regions and Proteins , 2014, Chemical reviews.
[60] Robert B Darnell,et al. HITS‐CLIP: panoramic views of protein–RNA regulation in living cells , 2010, Wiley interdisciplinary reviews. RNA.
[61] E. Lander,et al. Development and Applications of CRISPR-Cas9 for Genome Engineering , 2014, Cell.
[62] Gene W. Yeo,et al. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells , 2009, Nature Structural &Molecular Biology.
[63] Eric T. Wang,et al. Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.
[64] James P. Orengo,et al. A bichromatic fluorescent reporter for cell-based screens of alternative splicing , 2006, Nucleic acids research.
[65] C. Burge,et al. Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. , 2008, RNA.
[66] Tyson A. Clark,et al. Nova regulates brain-specific splicing to shape the synapse , 2005, Nature Genetics.
[67] Quaid Morris,et al. A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types. , 2014, Molecular cell.
[68] C. Ponting,et al. RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts , 2015, Genome research.
[69] A. Mele,et al. Nova2 Regulates Neuronal Migration through an RNA Switch in Disabled-1 Signaling , 2010, Neuron.
[70] Panagiotis K. Papasaikas,et al. Genome-wide identification of Fas/CD95 alternative splicing regulators reveals links with iron homeostasis. , 2015, Molecular cell.
[71] S. Millard,et al. Cell-Specific Alternative Splicing of Drosophila Dscam2 Is Crucial for Proper Neuronal Wiring , 2014, Neuron.
[72] J. Sanes,et al. Chemoaffinity Revisited: Dscams, Protocadherins, and Neural Circuit Assembly , 2010, Cell.
[73] P. Sharp,et al. Rbfox 2 controls autoregulation in RNA-binding protein networks Material , 2014 .
[74] J. C. Clemens,et al. Dendrite Self-Avoidance Is Controlled by Dscam , 2007, Cell.
[75] K. Aldape,et al. Abnormal Expression of REST/NRSF and Myc in Neural Stem/Progenitor Cells Causes Cerebellar Tumors by Blocking Neuronal Differentiation , 2006, Molecular and Cellular Biology.
[76] Christopher R. Sibley,et al. CLIPing the brain: Studies of protein–RNA interactions important for neurodegenerative disorders☆☆☆ , 2013, Molecular and Cellular Neuroscience.
[77] Z. Q. Lim,et al. Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. , 2012, Genes & development.
[78] A. Saliba,et al. Single-cell RNA-seq: advances and future challenges , 2014, Nucleic acids research.
[79] Steven R. Head,et al. An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment. , 2014, Molecular cell.
[80] B. Frey,et al. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing , 2008, Nature Genetics.
[81] Thomas C. Südhof,et al. Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing , 2014, Proceedings of the National Academy of Sciences.
[82] Robert B Darnell,et al. Nova-1 Regulates Neuron-Specific Alternative Splicing and Is Essential for Neuronal Viability , 2000, Neuron.
[83] D. Schmucker,et al. Cell-intrinsic requirement of Dscam1 isoform diversity for axon collateral formation , 2014, Science.
[84] Auinash Kalsotra,et al. Functional consequences of developmentally regulated alternative splicing , 2011, Nature Reviews Genetics.
[85] Robert B Darnell,et al. RNA protein interaction in neurons. , 2013, Annual review of neuroscience.
[86] M. Ares,et al. development and mature motor function The splicing regulator Rbfox 2 is required for both cerebellar Material , 2012 .
[87] R. Darnell,et al. Nova, the paraneoplastic Ri antigen, is homologous to an RNA-binding protein and is specifically expressed in the developing motor system , 1993, Neuron.
[88] P. Greengard,et al. A Translational Profiling Approach for the Molecular Characterization of CNS Cell Types , 2008, Cell.
[89] M. Rich,et al. Rescue of the spinal muscular atrophy phenotype in a mouse model by early postnatal delivery of SMN , 2010, Nature Biotechnology.
[90] Istvan Mody,et al. The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain , 2011, Nature Genetics.
[91] Douglas L. Black,et al. Neuronal regulation of alternative pre-mRNA splicing , 2007, Nature Reviews Neuroscience.
[92] Li Yang,et al. Conservation of an RNA regulatory map between Drosophila and mammals. , 2011, Genome research.
[93] Douglas L Black,et al. A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. , 2007, Genes & development.
[94] D. Black,et al. Alternative pre-mRNA splicing in neurons: growing up and extending its reach. , 2013, Trends in genetics : TIG.
[95] B. Frey,et al. Widespread intron retention in mammals functionally tunes transcriptomes , 2014, Genome research.
[96] Wei Sun,et al. Ultra‐deep profiling of alternatively spliced Drosophila Dscam isoforms by circularization‐assisted multi‐segment sequencing , 2013, The EMBO journal.
[97] Manuel Irimia,et al. Alternative splicing: decoding an expansive regulatory layer. , 2012, Current opinion in cell biology.
[98] J. Doudna,et al. The new frontier of genome engineering with CRISPR-Cas9 , 2014, Science.
[99] Bo Torben Porse,et al. Psd-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2 , 2011, Nature Neuroscience.
[100] S. Kameoka,et al. Activation of REST/NRSF Target Genes in Neural Stem Cells Is Sufficient To Cause Neuronal Differentiation , 2004, Molecular and Cellular Biology.
[101] D. Wilkin,et al. Neuron , 2001, Brain Research.
[102] B. Blencowe,et al. Regulation of Multiple Core Spliceosomal Proteins by Alternative Splicing-Coupled Nonsense-Mediated mRNA Decay , 2008, Molecular and Cellular Biology.
[103] C. Smith,et al. Crossregulation and Functional Redundancy between the Splicing Regulator PTB and Its Paralogs nPTB and ROD1 , 2007, Molecular cell.
[104] Daisuke Hattori,et al. Dscam-mediated cell recognition regulates neural circuit formation. , 2008, Annual review of cell and developmental biology.
[105] John A. Calarco,et al. Emerging Roles of Alternative Pre-mRNA Splicing Regulation in Neuronal Development and Function , 2012, Front. Neurosci..
[106] Christopher J. Lee,et al. Protein Modularity of Alternatively Spliced Exons Is Associated with Tissue-Specific Regulation of Alternative Splicing , 2005, PLoS genetics.
[107] B. Nadal-Ginard,et al. Human myocyte-specific enhancer factor 2 comprises a group of tissue-restricted MADS box transcription factors. , 1992, Genes & development.
[108] B. Blencowe,et al. An RNA map predicting Nova-dependent splicing regulation , 2006, Nature.
[109] Michael D. Wilson,et al. The Evolutionary Landscape of Alternative Splicing in Vertebrate Species , 2012, Science.
[110] S. Zipursky,et al. The molecular basis of self-avoidance. , 2013, Annual review of neuroscience.
[111] B. Garcia,et al. A specific LSD1/KDM1A isoform regulates neuronal differentiation through H3K9 demethylation. , 2015, Molecular cell.
[112] Tom Maniatis,et al. PROTOCADHERINS MEDIATE DENDRITIC SELF-AVOIDANCE IN THE MAMMALIAN NERVOUS SYSTEM , 2012, Nature.
[113] Thomas C. Südhof,et al. Presynaptic Neurexin-3 Alternative Splicing trans-Synaptically Controls Postsynaptic AMPA Receptor Trafficking , 2013, Cell.
[114] J. Ule,et al. Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. , 2011, Nature neuroscience.
[115] P. Greengard,et al. Resource Application of a Translational Profiling Approach for the Comparative Analysis of CNS Cell Types , 2009 .
[116] Chaolin Zhang,et al. Prediction of clustered RNA-binding protein motif sites in the mammalian genome , 2013, Nucleic acids research.
[117] S. Lipton,et al. hMEF2C gene encodes skeletal muscle- and brain-specific transcription factors , 1993, Molecular and cellular biology.
[118] P. Scheiffele,et al. Alternative Splicing Controls Selective Trans-Synaptic Interactions of the Neuroligin-Neurexin Complex , 2006, Neuron.
[119] Tyson A. Clark,et al. HITS-CLIP yields genome-wide insights into brain alternative RNA processing , 2008, Nature.
[120] David Haussler,et al. Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays , 2005, PLoS Comput. Biol..
[121] T. Maniatis,et al. The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. , 2007, Molecular cell.
[122] Schraga Schwartz,et al. Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB , 2010, Nature Structural &Molecular Biology.
[123] Masato Yano,et al. Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain. , 2012, Genes & development.
[124] S. Horvath,et al. Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology , 2011, Nature.
[125] D. Black,et al. The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation , 2014, eLife.
[126] T. Gulick,et al. Alternative Pre-mRNA Splicing Governs Expression of a Conserved Acidic Transactivation Domain in Myocyte Enhancer Factor 2 Factors of Striated Muscle and Brain* , 2005, Journal of Biological Chemistry.
[127] Gene W. Yeo,et al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges , 2013, Nature Structural &Molecular Biology.
[128] Tzumin Lee,et al. Drosophila Sensory Neurons Require Dscam for Dendritic Self-Avoidance and Proper Dendritic Field Organization , 2007, Neuron.
[129] P. McNutt,et al. Longitudinal RNA sequencing of the deep transcriptome during neurogenesis of cortical glutamatergic neurons from murine ESCs , 2013, F1000Research.