A Dynamical-Systems View of Stem Cell Biology

During development, cells undergo a unidirectional course of differentiation that progressively decreases the number of cell types they can potentially become. Stem cells, however, keep their potential to both proliferate and differentiate. A very important issue then is to understand the characteristics that distinguish stem cells from other cell types and allow them to conduct stable proliferation and differentiation. Here, we review relevant dynamical-systems approaches to describe the state transition between stem and differentiated cells, with an emphasis on fluctuating and oscillatory gene expression levels, as these represent the specific properties of stem cells. Relevance between recent experimental results and dynamical-systems descriptions of stem cell differentiation is also discussed.

[1]  C. Waddington The strategy of the genes , 1957 .

[2]  Stuart A. Kauffman,et al.  The origins of order , 1993 .

[3]  Steven H. Strogatz,et al.  Nonlinear Dynamics and Chaos , 2024 .

[4]  Arantxa Etxeverria The Origins of Order , 1993 .

[5]  C. Furusawa,et al.  Theory of robustness of irreversible differentiation in a stem cell system: chaos hypothesis. , 2000, Journal of theoretical biology.

[6]  Jonathan M. W. Slack,et al.  Conrad Hal Waddington: the last Renaissance biologist? , 2002, Nature Reviews Genetics.

[7]  P. Andrews,et al.  From teratocarcinomas to embryonic stem cells. , 2002, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[8]  G. Forgacs,et al.  Biological Physics of the Developing Embryo , 2005 .

[9]  Gabriel S. Eichler,et al.  Cell fates as high-dimensional attractor states of a complex gene regulatory network. , 2005, Physical review letters.

[10]  S. Yamanaka,et al.  Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors , 2006, Cell.

[11]  T. Graf,et al.  Heterogeneity of embryonic and adult stem cells. , 2008, Cell stem cell.

[12]  Ryoichiro Kageyama,et al.  Oscillations in Notch Signaling Regulate Maintenance of Neural Progenitors , 2008, Neuron.

[13]  Hannah H. Chang,et al.  Transcriptome-wide noise controls lineage choice in mammalian progenitor cells , 2008, Nature.

[14]  Sui Huang Reprogramming cell fates: reconciling rarity with robustness , 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

[15]  Ryoichiro Kageyama,et al.  The cyclic gene Hes1 contributes to diverse differentiation responses of embryonic stem cells. , 2009, Genes & development.

[16]  Geppino Falco,et al.  Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors. , 2009, Cell stem cell.

[17]  Alexei A. Sharov,et al.  Functional Heterogeneity of Embryonic Stem Cells Revealed through Translational Amplification of an Early Endodermal Transcript , 2010, PLoS biology.

[18]  Gary D Bader,et al.  Dynamic interaction networks in a hierarchically organized tissue , 2010, Molecular systems biology.

[19]  S. Kauffman,et al.  On the dynamics of random Boolean networks subject to noise: attractors, ergodic sets and cell types. , 2010, Journal of theoretical biology.

[20]  Jin Wang,et al.  Quantifying the Waddington landscape and biological paths for development and differentiation , 2011, Proceedings of the National Academy of Sciences.

[21]  C. Furusawa,et al.  Oscillatory Protein Expression Dynamics Endows Stem Cells with Robust Differentiation Potential , 2011, PloS one.

[22]  Carsten Peterson,et al.  Inferring rules of lineage commitment in haematopoiesis , 2012, Nature Cell Biology.

[23]  Sui Huang The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post‐Darwinian biology? , 2012, BioEssays : news and reviews in molecular, cellular and developmental biology.