Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci
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L. Muglia | A. Rokas | J. Capra | P. Abbot | Ge Zhang | A. Labella | A. Abraham | Sarah L. Fong | Yakov Pichkar | Abin Abraham
[1] Luke R. Lloyd-Jones,et al. Bayesian analysis of GWAS summary data reveals differential signatures of natural selection across human complex traits and functional genomic categories , 2019, bioRxiv.
[2] A. Rokas,et al. Immune Regulation in Eutherian Pregnancy: Live Birth Coevolved with Novel Immune Genes and Gene Regulation. , 2019, BioEssays : news and reviews in molecular, cellular and developmental biology.
[3] R. Nielsen,et al. Detecting Natural Selection , 2019, Handbook of Statistical Genomics.
[4] J. Jastrzębski,et al. Placenta Transcriptome Profiling in Intrauterine Growth Restriction (IUGR) , 2019, International journal of molecular sciences.
[5] J. Roman,et al. Maternal undernutrition during pregnancy alters the epigenetic landscape and the expression of endothelial function genes in male progeny. , 2019, Nutrition research.
[6] M. Pavlicev,et al. Evolution of the human pelvis and obstructed labor: New explanations of an old obstetrical dilemma. , 2019, American journal of obstetrics and gynecology.
[7] P. Visscher,et al. Leveraging GWAS for complex traits to detect signatures of natural selection in humans. , 2018, Current opinion in genetics & development.
[8] N. Jablonski,et al. The roles of vitamin D and cutaneous vitamin D production in human evolution and health. , 2018, International journal of paleopathology.
[9] N. Patterson,et al. Extreme Polygenicity of Complex Traits Is Explained by Negative Selection. , 2019, American journal of human genetics.
[10] J. Boardman,et al. Preterm Birth and the Risk of Neurodevelopmental Disorders - Is There a Role for Epigenetic Dysregulation? , 2018, Current genomics.
[11] Holly M Dunsworth. There Is No "Obstetrical Dilemma": Towards a Braver Medicine with Fewer Childbirth Interventions , 2018, Perspectives in biology and medicine.
[12] J. Martin,et al. Births in the United States, 2017. , 2018, NCHS data brief.
[13] G. Shaw,et al. Natural Selection Has Differentiated the Progesterone Receptor among Human Populations. , 2018, American journal of human genetics.
[14] P. Visscher,et al. Global genetic differentiation of complex traits shaped by natural selection in humans , 2018, Nature Communications.
[15] J. Coorssen,et al. Proteomic analysis of first trimester maternal serum to identify candidate biomarkers potentially predictive of spontaneous preterm birth. , 2018, Journal of proteomics.
[16] Luke R. Lloyd-Jones,et al. Signatures of negative selection in the genetic architecture of human complex traits , 2018, Nature Genetics.
[17] Daniel E. Miller,et al. Genetic Associations With Gestational Duration and Spontaneous Preterm Birth , 2018, Obstetric Anesthesia Digest.
[18] Astrid Gall,et al. Ensembl 2018 , 2017, Nucleic Acids Res..
[19] Jaume Bertranpetit,et al. PopHuman: the human population genomics browser , 2017, Nucleic Acids Res..
[20] Cédric Coulonges,et al. Genetic Associations with Spontaneous Preterm Birth. , 2017, The New England journal of medicine.
[21] P. Keightley,et al. Detecting positive selection in the genome , 2017, BMC Biology.
[22] Xiaoting Chen,et al. Genetic Associations with Gestational Length and Spontaneous Preterm Birth , 2017, The New England journal of medicine.
[23] Antonis Rokas,et al. The transformative potential of an integrative approach to pregnancy. , 2017, Placenta.
[24] C. Wagner,et al. New insights into the vitamin D requirements during pregnancy , 2017, Bone Research.
[25] P. Visscher,et al. 10 Years of GWAS Discovery: Biology, Function, and Translation. , 2017, American journal of human genetics.
[26] Sudhir Kumar,et al. TimeTree: A Resource for Timelines, Timetrees, and Divergence Times. , 2017, Molecular biology and evolution.
[27] Katherine M. Siewert,et al. Detecting Long-Term Balancing Selection Using Allele Frequency Correlation , 2017, bioRxiv.
[28] A. Rokas,et al. Mammalian pregnancy , 2017, Current Biology.
[29] F. Tao,et al. Vitamin D and risk of preterm birth: Up‐to‐date meta‐analysis of randomized controlled trials and observational studies , 2017, The journal of obstetrics and gynaecology research.
[30] J. Gelernter,et al. Widespread signatures of positive selection in common risk alleles associated to autism spectrum disorder , 2017, PLoS genetics.
[31] A. Siepel,et al. Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data , 2016, Nature Genetics.
[32] X. Cui,et al. Inhibition of the Arp2/3 complex impairs early embryo development of porcine parthenotes , 2016 .
[33] M. Inouye,et al. Genetic loci associated with coronary artery disease harbor evidence of selection and antagonistic pleiotropy , 2016, bioRxiv.
[34] Ole A. Andreassen,et al. Genetic Markers of Human Evolution Are Enriched in Schizophrenia , 2016, Biological Psychiatry.
[35] M. Gautier,et al. rehh 2.0: a reimplementation of the R package rehh to detect positive selection from haplotype structure , 2016, bioRxiv.
[36] F. Cunningham,et al. The Ensembl Variant Effect Predictor , 2016, Genome Biology.
[37] K. Nakayama,et al. Maternal TET3 is dispensable for embryonic development but is required for neonatal growth , 2015, Scientific Reports.
[38] Gabor T. Marth,et al. A global reference for human genetic variation , 2015, Nature.
[39] David Bryant,et al. popart: full‐feature software for haplotype network construction , 2015 .
[40] M. Laan,et al. Extensive shift in placental transcriptome profile in preeclampsia and placental origin of adverse pregnancy outcomes , 2015, Scientific Reports.
[41] Antonis Rokas,et al. Is preterm birth a human-specific syndrome? , 2015, Evolution, medicine, and public health.
[42] B. Crespi,et al. Genetic recapitulation of human pre-eclampsia risk during convergent evolution of reduced placental invasiveness in eutherian mammals , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.
[43] D. Altman,et al. The distribution of clinical phenotypes of preterm birth syndrome: implications for prevention. , 2015, JAMA pediatrics.
[44] Joel Hirschhorn,et al. SNPsnap: a Web-based tool for identification and annotation of matched SNPs , 2015, Bioinform..
[45] M. Zeviani,et al. A family with paroxysmal nonkinesigenic dyskinesias (PNKD): evidence of mitochondrial dysfunction. , 2015, European journal of paediatric neurology : EJPN : official journal of the European Paediatric Neurology Society.
[46] R. Gáspár,et al. Effects of nociceptin and nocistatin on uterine contraction. , 2015, Vitamins and hormones.
[47] C. Pennell,et al. Strategies to Prevent Preterm Birth , 2014, Front. Immunol..
[48] K. Washington,et al. Vitamin D deficiency in pregnant women of ethnic minority: a potential contributor to preeclampsia , 2014, Journal of Perinatology.
[49] M. Esplin. Overview of Spontaneous Preterm Birth: A Complex and Multifactorial Phenotype , 2014, Clinical obstetrics and gynecology.
[50] S. Fisher,et al. Preterm labor: One syndrome, many causes , 2014, Science.
[51] Michael C Neale,et al. The contribution of genetic and environmental factors to the duration of pregnancy. , 2014, American journal of obstetrics and gynecology.
[52] M. Carrington,et al. Maternal KIR in Combination with Paternal HLA-C2 Regulate Human Birth Weight , 2014, The Journal of Immunology.
[53] Pavlos Pavlidis,et al. 1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans , 2013, Nucleic Acids Res..
[54] Matthew D. Rasmussen,et al. Genome-Wide Inference of Ancestral Recombination Graphs , 2013, PLoS genetics.
[55] Sharon R Grossman,et al. Detecting natural selection in genomic data. , 2013, Annual review of genetics.
[56] M. Permezel,et al. Is Vitamin D Binding Protein a Novel Predictor of Labour? , 2013, PloS one.
[57] Arcadi Navarro,et al. Great ape genetic diversity and population history , 2013, Nature.
[58] Nam-Hyung Kim,et al. Actin nucleator Arp2/3 complex is essential for mouse preimplantation embryo development. , 2013, Reproduction, fertility, and development.
[59] Louis J Muglia,et al. The genomics of preterm birth: from animal models to human studies , 2013, Genome Medicine.
[60] R. Gáspár,et al. Uterus-Relaxing Effects of Nociceptin and Nocistatin: Studies on Preterm and Term-Pregnant Human Myometrium In vitro , 2013 .
[61] Zengrui Wu,et al. Serum Vitamin D Metabolites in Colorectal Cancer Patients Receiving Cholecalciferol Supplementation: Correlation with Polymorphisms in the Vitamin D Genes , 2013, Hormones and Cancer.
[62] Eurie L. Hong,et al. Annotation of functional variation in personal genomes using RegulomeDB , 2012, Genome research.
[63] A. Litonjua,et al. Plasma 25-hydroxyvitamin D during pregnancy and small-for-gestational age in black and white infants. , 2012, Annals of epidemiology.
[64] Ann-Beth Moller,et al. National, regional, and worldwide estimates of preterm birth rates in the year 2010 with time trends since 1990 for selected countries: a systematic analysis and implications , 2012, The Lancet.
[65] C. Pennell,et al. Preterm birth aetiology 2004–2008. Maternal factors associated with three phenotypes: spontaneous preterm labour, preterm pre-labour rupture of membranes and medically indicated preterm birth , 2012, The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians.
[66] Ji-Young Kim,et al. Associations of Vitamin D Binding Protein Gene Polymorphisms with the Development of Peripheral Arthritis and Uveitis in Ankylosing Spondylitis , 2011, The Journal of Rheumatology.
[67] Z. Deng,et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes , 2011, Nature.
[68] Gonçalo R. Abecasis,et al. The variant call format and VCFtools , 2011, Bioinform..
[69] B. Sibai,et al. Admixture Mapping to Identify Spontaneous Preterm Birth Susceptibility Loci in African Americans , 2011, Obstetrics and gynecology.
[70] C. Doglioni,et al. Liprin-α1 regulates breast cancer cell invasion by affecting cell motility, invadopodia and extracellular matrix degradation , 2011, Oncogene.
[71] Leena Peltonen,et al. An Evolutionary Genomic Approach to Identify Genes Involved in Human Birth Timing , 2011, PLoS genetics.
[72] Y. Li,et al. Cytoskeletal remodelling proteins identified in fetal-maternal interface in pregnant women and rhesus monkeys , 2011, Journal of Molecular Histology.
[73] Klaus Peter Schliep,et al. phangorn: phylogenetic analysis in R , 2010, Bioinform..
[74] Serafim Batzoglou,et al. Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++ , 2010, PLoS Comput. Biol..
[75] Justin C. Fay,et al. Primate-specific evolution of noncoding element insertion into PLA2G4C and human preterm birth , 2010, BMC Medical Genomics.
[76] Y. Li,et al. Proteomic approach identifies alterations in cytoskeletal remodelling proteins during decidualization of human endometrial stromal cells. , 2010, Journal of proteome research.
[77] G. Krikun,et al. A genomic and proteomic investigation of the impact of preimplantation factor on human decidual cells. , 2010, American journal of obstetrics and gynecology.
[78] Cory Y. McLean,et al. GREAT improves functional interpretation of cis-regulatory regions , 2010, Nature Biotechnology.
[79] G. Mor,et al. REVIEW ARTICLE: The Immune System in Pregnancy: A Unique Complexity , 2010, American journal of reproductive immunology.
[80] Louis J Muglia,et al. The enigma of spontaneous preterm birth. , 2010, The New England journal of medicine.
[81] L. Mincheva-Nilsson,et al. REVIEW ARTICLE: The Role of Placental Exosomes in Reproduction , 2010, American journal of reproductive immunology.
[82] J. J. Moore,et al. Decreased adherence and spontaneous separation of fetal membrane layers--amnion and choriodecidua--a possible part of the normal weakening process. , 2010, Placenta.
[83] K. Pollard,et al. Detection of nonneutral substitution rates on mammalian phylogenies. , 2010, Genome research.
[84] E. Birney,et al. Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt , 2009, Nature Protocols.
[85] Michael F. Wangler,et al. Mother’s Genome or Maternally-Inherited Genes Acting in the Fetus Influence Gestational Age in Familial Preterm Birth , 2009, Human Heredity.
[86] G. Acharya,et al. Differential placental gene expression in severe preeclampsia. , 2009, Placenta.
[87] Joshua M Akey,et al. Where do we go from here? Constructing genomic maps of positive selection in humans: , 2009 .
[88] P. Villesen,et al. Gene conversion and purifying selection of a placenta-specific ERV-V envelope gene during simian evolution , 2008, BMC Evolutionary Biology.
[89] T. Marquès-Bonet,et al. Balancing Selection Is the Main Force Shaping the Evolution of Innate Immunity Genes1 , 2008, The Journal of Immunology.
[90] D. Wildman,et al. The human progesterone receptor shows evidence of adaptive evolution associated with its ability to act as a transcription factor. , 2008, Molecular phylogenetics and evolution.
[91] Roberto Romero,et al. Epidemiology and causes of preterm birth , 2008, The Lancet.
[92] G. Willemsen,et al. Heritability of parturition timing: an extended twin design analysis. , 2007, American journal of obstetrics and gynecology.
[93] Alissa M. Weaver,et al. Cortactin is an essential regulator of matrix metalloproteinase secretion and extracellular matrix degradation in invadopodia. , 2007, Cancer research.
[94] Bart De Moor,et al. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis , 2005, Bioinform..
[95] S. Batzoglou,et al. Distribution and intensity of constraint in mammalian genomic sequence. , 2005, Genome research.
[96] K. Rosenberg,et al. Bipedalism and human birth: The obstetrical dilemma revisited , 2005 .
[97] Terrence S. Furey,et al. The UCSC Table Browser data retrieval tool , 2004, Nucleic Acids Res..
[98] K. Rosenberg,et al. Birth, obstetrics and human evolution , 2002, BJOG : an international journal of obstetrics and gynaecology.
[99] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[100] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[101] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.
[102] S Cnattingius,et al. Genetic influence on birthweight and gestational length determined by studies in offspring of twins , 2000, BJOG : an international journal of obstetrics and gynaecology.
[103] H. Bandelt,et al. Median-joining networks for inferring intraspecific phylogenies. , 1999, Molecular biology and evolution.
[104] Y W Loke,et al. Trophoblast migration during human placental implantation. , 1996, Human reproduction update.
[105] Marc Parmentier,et al. Isolation and structure of the endogenous agonist of opioid receptor-like ORL1 receptor , 1995, Nature.
[106] R. Hynes,et al. Cell adhesion events mediated by alpha 4 integrins are essential in placental and cardiac development. , 1995, Development.
[107] J. Crawford,et al. Births in the United States , 1964 .
[108] W. M. Krogman. The Scars of Human Evolution , 1951 .