Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy*S
暂无分享,去创建一个
[1] J. Yates,et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database , 1994, Journal of the American Society for Mass Spectrometry.
[2] A. Bleasby,et al. Chemistry, Mass Spectrometry and Peptide-Mass Databases: Evolution of Methods for the Rapid Identification and Mapping of Cellular Proteins , 1996 .
[3] D. N. Perkins,et al. Probability‐based protein identification by searching sequence databases using mass spectrometry data , 1999, Electrophoresis.
[4] J. Yates,et al. Probability-based validation of protein identifications using a modified SEQUEST algorithm. , 2002, Analytical chemistry.
[5] Roger E. Moore,et al. Qscore: An algorithm for evaluating SEQUEST database search results , 2002, Journal of the American Society for Mass Spectrometry.
[6] Alexey I Nesvizhskii,et al. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.
[7] Joshua E. Elias,et al. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. , 2003, Journal of proteome research.
[8] Robertson Craig,et al. Open source system for analyzing, validating, and storing protein identification data. , 2004, Journal of proteome research.
[9] S. Bryant,et al. Open mass spectrometry search algorithm. , 2004, Journal of proteome research.
[10] Robertson Craig,et al. TANDEM: matching proteins with tandem mass spectra. , 2004, Bioinformatics.
[11] J. Yates,et al. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. , 2004, Analytical chemistry.
[12] Rovshan G Sadygov,et al. Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book , 2004, Nature Methods.
[13] B. Cargile,et al. Potential for false positive identifications from large databases through tandem mass spectrometry. , 2004, Journal of proteome research.
[14] Nichole L. King,et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry , 2004, Genome Biology.
[15] B. Cargile,et al. Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification. , 2004, Journal of proteome research.
[16] Gilbert S Omenn,et al. An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis , 2005, Proteomics.
[17] Paul A Rudnick,et al. Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation. , 2005, Journal of proteome research.
[18] D. DeVoe,et al. Proteome analysis of microdissected tumor tissue using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-tandem MS. , 2005, Analytical chemistry.
[19] Steven P Gygi,et al. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations , 2005, Nature Methods.
[20] S. Guha,et al. Migration events play significant role in genetic differentiation: A microsatellite-based study on Sikkim settlers , 2005, Genome Biology.
[21] Matthew E Monroe,et al. Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. , 2005, Journal of proteome research.
[22] Eugene A. Kapp,et al. Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly‐available database , 2005, Proteomics.
[23] Brendan MacLean,et al. General framework for developing and evaluating database scoring algorithms using the TANDEM search engine , 2006, Bioinform..
[24] S. Stein,et al. On the risk of false positive identification using multiple ion monitoring in qualitative mass spectrometry: Large-scale intercomparisons with a comprehensive mass spectral library , 2006, Journal of the American Society for Mass Spectrometry.
[25] Eric W. Deutsch,et al. The PeptideAtlas project , 2005, Nucleic Acids Res..
[26] K. Resing,et al. Achieving in-depth proteomics profiling by mass spectrometry. , 2007, ACS chemical biology.
[27] Steven P Gygi,et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry , 2007, Nature Methods.
[28] D. DeVoe,et al. Membrane proteome analysis of microdissected ovarian tumor tissues using capillary isoelectric focusing/reversed-phase liquid chromatography-tandem MS. , 2007, Analytical chemistry.