Animal Models of Epigenetic Inheritance

Although genomic DNA is the template of our heredity, it is the coordination and regulation of its expression that results in the wide complexity and diversity seen among organisms. In recent years, an emerging body of evidence has focused on the role of epigenetics as one mechanism by which gene expression can be maintained and modulated throughout the lifetime of an individual. Epigenetics refers to heritable alterations in gene expression that are not mediated by changes in primary DNA sequence and includes mitotic and/or meiotic events. In essence, epigenetic modulation results in functional adaptations of the genomic response to the environment and is believed to play a fundamental role in early developmental plasticity. This article focuses on several animal models that have been developed over the past decade to study epigenetic inheritance, many of which have arisen from the developmental origins of adult health and disease fields.

[1]  吕一旭 Yixu Lu 引言 (Introduction) , 2009, Provincial China.

[2]  Kevin Grove,et al.  Developmental origins of disease and determinants of chromatin structure: maternal diet modifies the primate fetal epigenome. , 2008, Journal of molecular endocrinology.

[3]  J. Owens,et al.  Improved lactational nutrition and postnatal growth ameliorates impairment of glucose tolerance by uteroplacental insufficiency in male rat offspring. , 2008, Endocrinology.

[4]  M. Nijland,et al.  Prenatal origins of adult disease , 2008, Current opinion in obstetrics & gynecology.

[5]  Dinshaw J. Patel,et al.  Multivalent engagement of chromatin modifications by linked binding modules , 2007, Nature Reviews Molecular Cell Biology.

[6]  Yang Shi,et al.  Histone lysine demethylases: emerging roles in development, physiology and disease , 2007, Nature Reviews Genetics.

[7]  Ira M. Hall,et al.  Recurrent DNA copy number variation in the laboratory mouse , 2007, Nature Genetics.

[8]  Richard Pazdur,et al.  FDA approval summary: vorinostat for treatment of advanced primary cutaneous T-cell lymphoma. , 2007, The oncologist.

[9]  A Lucas,et al.  Programming by early nutrition in man. , 2007, Ciba Foundation symposium.

[10]  R. Jaenisch,et al.  A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells , 2007, Cell.

[11]  Jonathan Sebat,et al.  Major changes in our DNA lead to major changes in our thinking , 2007, Nature Genetics.

[12]  L. Poston,et al.  Mismatched pre- and postnatal nutrition leads to cardiovascular dysfunction and altered renal function in adulthood , 2007, Proceedings of the National Academy of Sciences.

[13]  Dustin E. Schones,et al.  High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.

[14]  Li-Huei Tsai,et al.  Recovery of learning and memory is associated with chromatin remodelling , 2007, Nature.

[15]  D. Altshuler,et al.  Completing the map of human genetic variation , 2007, Nature.

[16]  Eric J. Nestler,et al.  Epigenetic regulation in psychiatric disorders , 2007, Nature Reviews Neuroscience.

[17]  K. Thornburg,et al.  Placental insufficiency decreases cell cycle activity and terminal maturation in fetal sheep cardiomyocytes , 2007, The Journal of physiology.

[18]  R. Jirtle,et al.  Epigenetic gene regulation: linking early developmental environment to adult disease. , 2007, Reproductive toxicology.

[19]  Michael Q. Zhang,et al.  Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome , 2007, Cell.

[20]  K. Fischbeck,et al.  Trichostatin A increases SMN expression and survival in a mouse model of spinal muscular atrophy. , 2007, The Journal of clinical investigation.

[21]  Yang Shi,et al.  Dynamic regulation of histone lysine methylation by demethylases. , 2007, Molecular cell.

[22]  C. Callaway,et al.  Growth retardation alters the epigenetic characteristics of hepatic dual specificity phosphatase 5 , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[23]  R. Waterland,et al.  Maternal methyl supplements increase offspring DNA methylation at Axin fused , 2006, Genesis.

[24]  L. Mahadevan,et al.  Enhanced histone acetylation and transcription: a dynamic perspective. , 2006, Molecular cell.

[25]  S. Ozanne,et al.  Mechanisms by which poor early growth programs type-2 diabetes, obesity and the metabolic syndrome , 2006, Physiology & Behavior.

[26]  J. Mellor,et al.  Dynamic nucleosomes and gene transcription. , 2006, Trends in genetics : TIG.

[27]  B. Breier,et al.  Prenatal influences on leptin sensitivity and susceptibility to diet-induced obesity. , 2006, The Journal of endocrinology.

[28]  Karl P Nightingale,et al.  Histone modifications: signalling receptors and potential elements of a heritable epigenetic code. , 2006, Current opinion in genetics & development.

[29]  C. Callaway,et al.  Uteroplacental insufficiency affects epigenetic determinants of chromatin structure in brains of neonatal and juvenile IUGR rats. , 2006, Physiological genomics.

[30]  Kristin A. Maloney,et al.  Comparative phylogenetic analysis reveals multiple non-imprinted isoforms of opossum Dlk1 , 2006, Mammalian Genome.

[31]  D. Rodenhiser,et al.  Epigenetics and human disease: translating basic biology into clinical applications , 2006, Canadian Medical Association Journal.

[32]  R. Waterland,et al.  Maternal Genistein Alters Coat Color and Protects Avy Mouse Offspring from Obesity by Modifying the Fetal Epigenome , 2006, Environmental health perspectives.

[33]  Han G Brunner,et al.  Identification of disease genes by whole genome CGH arrays. , 2005, Human molecular genetics.

[34]  N. Carter,et al.  Prenatal diagnosis by array-CGH. , 2005, European journal of medical genetics.

[35]  Michael K. Skinner,et al.  Epigenetic Transgenerational Actions of Endocrine Disruptors and Male Fertility , 2005, Science.

[36]  M. Hanson,et al.  Dietary protein restriction of pregnant rats induces and folic acid supplementation prevents epigenetic modification of hepatic gene expression in the offspring. , 2005, The Journal of nutrition.

[37]  G. Giraud,et al.  The effects of anaemia as a programming agent in the fetal heart , 2005, The Journal of physiology.

[38]  I. McMillen,et al.  Developmental origins of the metabolic syndrome: prediction, plasticity, and programming. , 2005, Physiological reviews.

[39]  S. Ozanne,et al.  Altered body composition and metabolism in the male offspring of high fat-fed rats. , 2005, Metabolism: clinical and experimental.

[40]  Yang Shi,et al.  Histone Demethylation Mediated by the Nuclear Amine Oxidase Homolog LSD1 , 2004, Cell.

[41]  D. Kennedy Breakthrough of the Year , 2004, Science.

[42]  C. Callaway,et al.  Uteroplacental insufficiency induces site-specific changes in histone H3 covalent modifications and affects DNA-histone H3 positioning in day 0 IUGR rat liver. , 2004, Physiological genomics.

[43]  Jan Bressler,et al.  Epigenetics and human disease. , 2004, Annual review of genomics and human genetics.

[44]  Imran Y. Khan,et al.  Predictive Adaptive Responses to Maternal High-Fat Diet Prevent Endothelial Dysfunction but Not Hypertension in Adult Rat Offspring , 2004, Circulation.

[45]  P. Gluckman,et al.  Developmental Origins of Disease Paradigm: A Mechanistic and Evolutionary Perspective , 2004, Pediatric Research.

[46]  A. Slyper The pediatric obesity epidemic: causes and controversies. , 2004, The Journal of clinical endocrinology and metabolism.

[47]  W. Dean,et al.  Epigenetic reprogramming during early development in mammals. , 2004, Reproduction.

[48]  P. D. de Leeuw,et al.  Reduced Uteroplacental Blood Flow Alters Renal Arterial Reactivity and Glomerular Properties in the Rat Offspring , 2004, Hypertension.

[49]  Peter A. Jones,et al.  Epigenetics in human disease and prospects for epigenetic therapy , 2004, Nature.

[50]  Mark A. Hanson,et al.  The developmental origins of the metabolic syndrome , 2004, Trends in Endocrinology & Metabolism.

[51]  C. Blanco,et al.  Prenatal stress changes rat arterial adrenergic reactivity in a regionally selective manner. , 2004, European journal of pharmacology.

[52]  J. Hsu,et al.  Uteroplacental insufficiency increases apoptosis and alters p53 gene methylation in the full-term IUGR rat kidney. , 2003, American journal of physiology. Regulatory, integrative and comparative physiology.

[53]  Ruth Luthi-Carter,et al.  Histone Deacetylase Inhibition by Sodium Butyrate Chemotherapy Ameliorates the Neurodegenerative Phenotype in Huntington's Disease Mice , 2003, The Journal of Neuroscience.

[54]  B. Gusterson,et al.  The maternal endocrine environment in the low-protein model of intra-uterine growth restriction , 2003, British Journal of Nutrition.

[55]  K. Thornburg,et al.  Fetal anemia leads to augmented contractile response to hypoxic stress in adulthood. , 2003, American journal of physiology. Regulatory, integrative and comparative physiology.

[56]  E. Li,et al.  Establishment and Maintenance of Genomic Methylation Patterns in Mouse Embryonic Stem Cells by Dnmt3a and Dnmt3b , 2003, Molecular and Cellular Biology.

[57]  Robert A. Waterland,et al.  Transposable Elements: Targets for Early Nutritional Effects on Epigenetic Gene Regulation , 2003, Molecular and Cellular Biology.

[58]  A. Fowden,et al.  Hindlimb glucose and lactate metabolism during umbilical cord compression and acute hypoxemia in the late-gestation ovine fetus. , 2003, American journal of physiology. Regulatory, integrative and comparative physiology.

[59]  V. Rakyan,et al.  Transgenerational inheritance of epigenetic states at the murine AxinFu allele occurs after maternal and paternal transmission , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[60]  Imran Y. Khan,et al.  Gender-Linked Hypertension in Offspring of Lard-Fed Pregnant Rats , 2003, Hypertension.

[61]  B. Turner,et al.  Cellular Memory and the Histone Code , 2002, Cell.

[62]  S. Min,et al.  Power spectral analysis of heart rate variability during acute hypoxia in fetal lambs , 2002, Acta obstetricia et gynecologica Scandinavica.

[63]  Bert Vogelstein,et al.  DNMT1 and DNMT3b cooperate to silence genes in human cancer cells , 2002, Nature.

[64]  A. Fowden,et al.  Effects of prevailing hypoxaemia, acidaemia or hypoglycaemia upon the cardiovascular, endocrine and metabolic responses to acute hypoxaemia in the ovine fetus , 2002, The Journal of physiology.

[65]  Daiya Takai,et al.  Comprehensive analysis of CpG islands in human chromosomes 21 and 22 , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[66]  R. Waterland,et al.  Early postnatal nutrition determines adult pancreatic glucose-responsive insulin secretion and islet gene expression in rats. , 2002, The Journal of nutrition.

[67]  J. Parer,et al.  Regional brain blood flow and cerebral hemispheric oxygen consumption during acute hypoxaemia in the llama fetus , 2002, The Journal of physiology.

[68]  H. Pollack,et al.  Epidemic increase in childhood overweight, 1986-1998. , 2001, JAMA.

[69]  R. Simmons,et al.  Intrauterine growth retardation leads to the development of type 2 diabetes in the rat. , 2001, Diabetes.

[70]  B. Breier,et al.  IGF-I treatment reduces hyperphagia, obesity, and hypertension in metabolic disorders induced by fetal programming. , 2001, Endocrinology.

[71]  B. Breier,et al.  Dysregulation of the adipoinsular axis -- a mechanism for the pathogenesis of hyperleptinemia and adipogenic diabetes induced by fetal programming. , 2001, The Journal of endocrinology.

[72]  D. Kelley,et al.  Myocardial gene expression of glucose transporter 1 and glucose transporter 4 in response to uteroplacental insufficiency in the rat. , 2001, The Journal of endocrinology.

[73]  J. Nyengaard,et al.  Maternal Protein Restriction Suppresses the Newborn Renin-Angiotensin System and Programs Adult Hypertension in Rats , 2001, Pediatric Research.

[74]  D. Barker,et al.  Effects of Altitude versus Economic Status on Birth Weight and Body Shape at Birth , 2001, Pediatric Research.

[75]  A. Fowden,et al.  Neuropeptide Y in the Sheep Fetus: Effects of Acute Hypoxemia and Dexamethasone During Late Gestation* * This work was funded by the Tommy's Campaign and the British Heart Foundation, UK. , 2000, Endocrinology.

[76]  C. Allis,et al.  Signaling to Chromatin through Histone Modifications , 2000, Cell.

[77]  J. Maylie,et al.  Right ventricular systolic pressure load alters myocyte maturation in fetal sheep. , 2000, American journal of physiology. Regulatory, integrative and comparative physiology.

[78]  C. Popp-Snijders,et al.  Endocrine regulation and extended follow up of longitudinal growth in intrauterine growth-retarded rats. , 2000, The Journal of endocrinology.

[79]  B M Turner,et al.  Histone acetylation and an epigenetic code. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[80]  A. Fowden,et al.  Low Doses of Dexamethasone Suppress Pituitary-Adrenal Function but Augment the Glycemic Response to Acute Hypoxemia in Fetal Sheep during Late Gestation , 2000, Pediatric Research.

[81]  W. Reik,et al.  Active demethylation of the paternal genome in the mouse zygote , 2000, Current Biology.

[82]  David I. K. Martin,et al.  Epigenetic inheritance at the agouti locus in the mouse , 1999, Nature Genetics.

[83]  R. Jaenisch,et al.  Mammalian (cytosine-5) methyltransferases cause genomic DNA methylation and lethality in Drosophila , 1999, Nature Genetics.

[84]  D. Haber,et al.  DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development , 1999, Cell.

[85]  A. Wolffe,et al.  Epigenetics: regulation through repression. , 1999, Science.

[86]  R. Kodell,et al.  Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice , 1998, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[87]  K. Jen,et al.  High-fat feeding during pregnancy and lactation affects offspring metabolism in rats , 1995, Physiology & Behavior.

[88]  T. Bestor,et al.  Activation of mammalian DNA methyltransferase by cleavage of a Zn binding regulatory domain. , 1992, The EMBO journal.

[89]  Rudolf Jaenisch,et al.  Targeted mutation of the DNA methyltransferase gene results in embryonic lethality , 1992, Cell.

[90]  K. Nicolaides,et al.  Plasma amino acids in appropriate‐ and small‐for‐gestational‐age fetuses , 1990, American journal of obstetrics and gynecology.

[91]  A. Gotto,et al.  Development of cholesterol homeostatic memory in the rat is influenced by maternal diets. , 1990, Metabolism: clinical and experimental.

[92]  K. Nicolaides,et al.  Blood gases, pH, and lactate in appropriate- and small-for-gestational-age fetuses. , 1989, American journal of obstetrics and gynecology.

[93]  K. Nicolaides,et al.  Cordocentesis in the diagnosis of intrauterine starvation. , 1989, American journal of obstetrics and gynecology.

[94]  K. Nicolaides,et al.  Blood glucose and oxygen tension levels in small-for-gestational-age fetuses. , 1989, American journal of obstetrics and gynecology.

[95]  V. Ingram,et al.  Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases. , 1988, Journal of molecular biology.

[96]  J. Owens,et al.  Changes to metabolite concentration in fetal sheep subjected to prolonged hypobaric hypoxia. , 1988, Journal of developmental physiology.

[97]  R Holliday,et al.  The inheritance of epigenetic defects. , 1987, Science.

[98]  E. Ogata,et al.  Altered gas exchange, limited glucose and branched chain amino acids, and hypoinsulinism retard fetal growth in the rat. , 1986, Metabolism: clinical and experimental.

[99]  D. Freedman,et al.  Relation of serum lipoprotein levels and systolic blood pressure to early atherosclerosis. The Bogalusa Heart Study. , 1986, The New England journal of medicine.

[100]  D. Solter,et al.  Completion of mouse embryogenesis requires both the maternal and paternal genomes , 1984, Cell.

[101]  M. Surani,et al.  Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis , 1984, Nature.

[102]  M. Ehrlich,et al.  Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells. , 1982, Nucleic acids research.

[103]  R Holliday,et al.  DNA modification mechanisms and gene activity during development , 1975, Science.

[104]  C. H. WADDINGTON,et al.  Towards a Theoretical Biology , 1968, Nature.

[105]  William Stafford Noble,et al.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.

[106]  A. El-Osta,et al.  Will broad-spectrum histone deacetylase inhibitors be superseded by more specific compounds? , 2007, Leukemia.

[107]  E. Pennisi Breakthrough of the year. Human genetic variation. , 2007, Science.

[108]  Shuk-Mei Ho,et al.  4 Epigenetically Regulates Phosphodiesterase Type 4 Variant Increases Susceptibility to Prostate Carcinogenesis and Developmental Exposure to Estradiol and Bisphenol A , 2006 .

[109]  S. Minucci,et al.  Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer , 2006, Nature Reviews Cancer.

[110]  M. Rots,et al.  Step out of the groove: epigenetic gene control systems and engineered transcription factors. , 2006, Advances in genetics.

[111]  Imran Y. Khan,et al.  A high-fat diet during rat pregnancy or suckling induces cardiovascular dysfunction in adult offspring. , 2005, American journal of physiology. Regulatory, integrative and comparative physiology.

[112]  Lubo Zhang,et al.  Effects of chronic hypoxia on maternal vasodilation and vascular reactivity in guinea pig and ovine pregnancy. , 2003, High altitude medicine & biology.

[113]  R. Strauss,et al.  Childhood obesity. , 2002, Pediatric clinics of North America.

[114]  D. Giussani,et al.  Plasma adrenocorticotropin and cortisol concentrations during acute hypoxemia after a reversible period of adverse intrauterine conditions in the ovine fetus during late gestation. , 2001, Endocrinology.

[115]  A. Fowden,et al.  Neuropeptide Y in the sheep fetus: effects of acute hypoxemia and dexamethasone during late gestation. , 2000, Endocrinology.

[116]  W. Mayer,et al.  Demethylation of the zygotic paternal genome. , 2000, Nature.

[117]  P. Jones,et al.  The DNA methylation paradox. , 1999, Trends in genetics : TIG.

[118]  K. Nicolaides,et al.  Metabolic and endocrine findings in appropriate and small for gestational age fetuses , 1991, Journal of perinatal medicine.

[119]  A. D'ercole,et al.  Tissue and Serum Concentrations of Somatomedin-C/Insulin-Like Growth Factor I in Fetal Rats Made Growth Retarded by Uterine Artery Ligation , 1986, Pediatric Research.

[120]  E. Ogata,et al.  Altered Growth, Hypoglycemia, Hypoalaninemia, and Ketonemia in the Young Rat: Postnatal Consequences of Intrauterine Growth Retardation , 1985, Pediatric Research.

[121]  Arthur D. Riggs,et al.  X inactivation, differentiation, and DNA methylation. , 1975, Cytogenetics and cell genetics.

[122]  Xavier Estivill,et al.  Disorders: Filling the Gaps and Exploring Complexity in Genome-Wide Association Studies , 2022 .