Analysing infrequently sampled animal tracking data by incorporating generalized movement trajectories with kernel density estimation

Abstract When analysing the movements of an animal, a common task is to generate a continuous probability density surface that characterises the spatial distribution of its locations, termed a home range. Traditional kernel density estimation (KDE), the Brownian Bridges kernel method, and time-geographic density estimation are all commonly used for this purpose, although their applicability in some practical situations is limited. Other studies have argued that KDE is inappropriate analysing moving objects, while the latter two methods are only suitable for tracking data collected at frequent enough intervals such that an object’s movement pattern can be adequately represented using a space–time path created by connecting consecutive points. This research formulates and evaluates KDE using generalised movement trajectories approximated by Delaunay triangulation (KDE-DT) as a method for analysing infrequently sampled animal tracking data. In this approach, a DT is constructed from a point pattern of tracking data in order to approximate the network of movement trajectories for an animal. This network represents the generalised movement patterns of an animal rather than its specific, individual trajectories between locations. Then, kernel density estimates are calculated with distances measured using that network. First, this paper describes the method and then applies it to generate a probability density surface for a Florida panther from radio-tracking data collected three times per week. Second, the performance of the technique is evaluated in the context of delineating wildlife home ranges and core areas from simulated animal locational data. The results of the simulations suggest that KDE-DT produces more accurate home range estimates than traditional KDE, which was evaluated with the same data in a previous study. In addition to animal home range analysis, the technique may be useful for characterising a variety of spatial point patterns generated by objects that move through continuous space, such as pedestrians or ships.

[1]  Joshua J. Millspaugh,et al.  Comparison of least-squares cross-validation bandwidth options for kernel home-range estimation , 2003 .

[2]  Benjamin Coifman,et al.  Measuring Freeway Traffic Conditions with Transit Vehicles , 2009 .

[3]  B. Silverman Density estimation for statistics and data analysis , 1986 .

[4]  T. Roper,et al.  Comparison of two sampling protocols and four home-range estimators using radio-tracking data from urban badgers Meles meles , 2008 .

[5]  Wayne M. Getz,et al.  A local nearest-neighbor convex-hull construction of home ranges and utilization distributions , 2004 .

[6]  D. W. Scott,et al.  Cross-Validation of Multivariate Densities , 1994 .

[7]  Joachim Gudmundsson,et al.  Reporting Leaders and Followers among Trajectories of Moving Point Objects , 2008, GeoInformatica.

[8]  Anton D. Tucker,et al.  Nest site fidelity and clutch frequency of loggerhead turtles are better elucidated by satellite telemetry than by nocturnal tagging efforts: Implications for stock estimation , 2010 .

[9]  J. Fryxell,et al.  Are there general mechanisms of animal home range behaviour? A review and prospects for future research. , 2008, Ecology letters.

[10]  B. Worton Kernel methods for estimating the utilization distribution in home-range studies , 1989 .

[11]  E. Debevec,et al.  LINEAR HOME RANGES: EFFECTS OF SMOOTHING, SAMPLE SIZE, AND AUTOCORRELATION ON KERNEL ESTIMATES , 2001 .

[12]  Shaojun Feng,et al.  A dynamic sampling scheme for GPS integrity assessment , 2006 .

[13]  Joni A. Downs,et al.  Time-Geographic Density Estimation for Moving Point Objects , 2010, GIScience.

[14]  Zhoumingtian,et al.  Moving Objects Data Management in GPS/GIS Environment , 2004 .

[15]  Michel Mouchart,et al.  The local spatial autocorrelation and the kernel method for identifying black zones. A comparative approach. , 2003, Accident; analysis and prevention.

[16]  Robert A. Gitzen,et al.  Analysis of Animal Space Use and Movements , 2001 .

[17]  Harvey J. Miller,et al.  Necessary Space—Time Conditions for Human Interaction , 2005 .

[18]  J. Row,et al.  Kernels Are Not Accurate Estimators of Home-range Size for Herpetofauna , 2006, Copeia.

[19]  Marie-Aude Aufaure,et al.  Metaphors for Visual Querying Spatio-Temporal Databases , 2000, VISUAL.

[20]  Dimitrios Gunopulos,et al.  Indexing mobile objects using dual transformations , 2004, The VLDB Journal.

[21]  Ian D. Bishop,et al.  Improving and Extending Home Range and Habitat Analysis by Integration with a Geographic Information System , 2002, Trans. GIS.

[22]  Noel A Cressie,et al.  Statistics for Spatial Data. , 1992 .

[23]  Joshua J. Millspaugh,et al.  Comparability of three analytical techniques to assess joint space use , 2004 .

[24]  Tijs Neutens,et al.  Anchor uncertainty and space-time prisms on road networks , 2010, Int. J. Geogr. Inf. Sci..

[25]  Nicholas J. Aebischer,et al.  Compositional Analysis of Habitat Use From Animal Radio-Tracking Data , 1993 .

[26]  Giuseppe Borruso,et al.  Network Density and the Delimitation of Urban Areas , 2003, Trans. GIS.

[27]  Robert Weibel,et al.  Revealing the physics of movement: Comparing the similarity of movement characteristics of different types of moving objects , 2009, Comput. Environ. Urban Syst..

[28]  Michael S. Mitchell,et al.  Estimated home ranges can misrepresent habitat relationships on patchy landscapes , 2008 .

[29]  J. F. Benson,et al.  Florida Panther Habitat Selection Analysis of Concurrent GPS and VHF Telemetry Data , 2008 .

[30]  Jong Hyun Park,et al.  Design of Query Language for Location-Based Services , 2005, W2GIS.

[31]  Mark W. Horner,et al.  Effects of Point Pattern Shape on Home-Range Estimates , 2008 .

[32]  S. Amstrup,et al.  Using satellite radiotelemetry data to delineate and manage wildlife populations , 2004 .

[33]  Jun Yan,et al.  Kernel Density Estimation of traffic accidents in a network space , 2008, Comput. Environ. Urban Syst..

[34]  Devin S Johnson,et al.  A General Framework for the Analysis of Animal Resource Selection from Telemetry Data , 2008, Biometrics.

[35]  Francesca Cagnacci,et al.  The home-range concept: are traditional estimators still relevant with modern telemetry technology? , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.

[36]  Fabio Porto,et al.  A conceptual view on trajectories , 2008, Data Knowl. Eng..

[37]  Atsuyuki Okabe,et al.  A kernel density estimation method for networks, its computational method and a GIS‐based tool , 2009, Int. J. Geogr. Inf. Sci..

[38]  John D. C. Linnell,et al.  Habitat use and ecological correlates of home range size in a small cervid : the roe deer , 1996 .

[39]  Mike Rees,et al.  5. Statistics for Spatial Data , 1993 .

[40]  Xiang Li,et al.  Indexing network‐constrained trajectories for connectivity‐based queries , 2006, Int. J. Geogr. Inf. Sci..

[41]  Joni A. Downs,et al.  Accuracy of Home Range Estimators for Homogeneous and Inhomogeneous Point Patterns , 2012 .

[42]  B. J. Worton,et al.  A review of models of home range for animal movement , 1987 .

[43]  Michael S. Mitchell,et al.  A mechanistic home range model for optimal use of spatially distributed resources , 2004 .

[44]  Atsuyuki Okabe,et al.  Spatial Tessellations: Concepts and Applications of Voronoi Diagrams , 1992, Wiley Series in Probability and Mathematical Statistics.

[45]  Atte Moilanen,et al.  Kernel-based home range method for data with irregular sampling intervals , 2006 .

[46]  Mark W. Horner,et al.  Network-based Home Range Analysis Using Delaunay Triangulation , 2007, 4th International Symposium on Voronoi Diagrams in Science and Engineering (ISVD 2007).

[47]  M. Fortin,et al.  Spatial Analysis: A Guide for Ecologists 1st edition , 2005 .

[48]  Pip Forer,et al.  Movement beyond the snapshot - Dynamic analysis of geospatial lifelines , 2007, Comput. Environ. Urban Syst..

[49]  Scott A. Bridwell,et al.  A Field-Based Theory for Time Geography , 2009 .

[50]  D. W. Scott,et al.  Multivariate Density Estimation, Theory, Practice and Visualization , 1992 .

[51]  Hongbo Yu,et al.  Visualizing and Analyzing Activities in an Integrated Space-Time Environment , 2007 .

[52]  Christopher G. Lowe,et al.  Home range and habitat utilization of adult California sheephead, Semicossyphus pulcher (Labridae), in a temperate no-take marine reserve , 2005 .

[53]  Gary C. White,et al.  Analysis of Wildlife Radio-Tracking Data , 1990 .

[54]  Mark W. Horner,et al.  A Characteristic‐Hull Based Method for Home Range Estimation , 2009, Trans. GIS.

[55]  Mark W. Horner,et al.  Time-geographic density estimation for home range analysis , 2011, Ann. GIS.

[56]  Joni A. Downs,et al.  The Geography of Conflict and Death in Belfast, Northern Ireland , 2009 .

[57]  S. L. Lima,et al.  Evaluation of Root-n Bandwidth Selectors for Kernel Density Estimation , 2010 .

[58]  David W. Macdonald,et al.  Are kernels the mustard? Data from global positioning system (GPS) collars suggests problems for kernel home- range analyses with least-squares cross-validation , 2005 .

[59]  Stephen M. Krone,et al.  Analyzing animal movements using Brownian bridges. , 2007, Ecology.

[60]  John Fieberg,et al.  Kernel density estimators of home range: smoothing and the autocorrelation red herring. , 2007, Ecology.