Determining the bacterial cell biology of Planctomycetes

[1]  W. Baumeister,et al.  Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins. , 2017, Journal of structural biology.

[2]  N. Chia,et al.  Nuclear Pore-Like Structures in a Compartmentalized Bacterium , 2016, bioRxiv.

[3]  J. Wink,et al.  Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules , 2016, Front. Microbiol..

[4]  José A. Dianes,et al.  2016 update of the PRIDE database and its related tools , 2016, Nucleic Acids Res..

[5]  Matthew R. Laird,et al.  PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures , 2015, Nucleic Acids Res..

[6]  N. Ward,et al.  Global and Targeted Lipid Analysis of Gemmata obscuriglobus Reveals the Presence of Lipopolysaccharide, a Signature of the Classical Gram-Negative Outer Membrane , 2015, Journal of bacteriology.

[7]  M. Kuehn,et al.  Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions , 2015, Nature Reviews Microbiology.

[8]  Daniel Choquet,et al.  SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data , 2015, Nature Methods.

[9]  F. Cava,et al.  Anammox Planctomycetes have a peptidoglycan cell wall , 2015, Nature Communications.

[10]  S. Spring,et al.  Planctomycetes do possess a peptidoglycan cell wall , 2015, Nature Communications.

[11]  Dieter Jahn,et al.  A Metaproteomics Approach to Elucidate Host and Pathogen Protein Expression during Catheter-Associated Urinary Tract Infections (CAUTIs) , 2015, Molecular & Cellular Proteomics.

[12]  C. Jogler.  The bacterial ‘mitochondrium’ , 2014, Molecular microbiology.

[13]  J. S. Sinninghe Damsté,et al.  Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis , 2014, Molecular microbiology.

[14]  N. Ward,et al.  Spatially segregated transcription and translation in cells of the endomembrane-containing bacterium Gemmata obscuriglobus , 2014, Proceedings of the National Academy of Sciences.

[15]  H. Saibil,et al.  Pathogen–host reorganization during Chlamydia invasion revealed by cryo-electron tomography , 2014, Cellular microbiology.

[16]  B. Johansson,et al.  Subcellular localization of an ATPase in anammox bacteria using proteomics and immunogold electron microscopy. , 2014, FEMS microbiology letters.

[17]  Shoh Asano,et al.  Robust membrane detection based on tensor voting for electron tomography. , 2014, Journal of structural biology.

[18]  D. Devos.  Re-interpretation of the evidence for the PVC cell plan supports a Gram-negative origin , 2014, Antonie van Leeuwenhoek.

[19]  C. Kerfeld,et al.  Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides , 2014, Applied and Environmental Microbiology.

[20]  R. Rachel,et al.  A New Addition to the Cell Plan of Anammox Bacteria: “Candidatus Kuenenia stuttgartiensis” Has a Protein Surface Layer as the Outermost Layer of the Cell , 2013, Journal of bacteriology.

[21]  Johannes Sikorski,et al.  From genome mining to phenotypic microarrays: Planctomycetes as source for novel bioactive molecules , 2013, Antonie van Leeuwenhoek.

[22]  Jörn Petersen,et al.  From genome mining to phenotypic microarrays: Planctomycetes as source for novel bioactive molecules , 2013, Antonie van Leeuwenhoek.

[23]  Sabine Pruggnaller,et al.  Three-Dimensional Reconstruction of Bacteria with a Complex Endomembrane System , 2013, PLoS biology.

[24]  D. Agard,et al.  Electron counting and beam-induced motion correction enable near atomic resolution single particle cryoEM , 2013, Nature Methods.

[25]  Gabriele Deckers-Hebestreit,et al.  Functional production of the Na+ F1FO ATP synthase from Acetobacterium woodii in Escherichia coli requires the native AtpI , 2013, Journal of Bioenergetics and Biomembranes.

[26]  B. Roschitzki,et al.  Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix. , 2012, Journal of proteome research.

[27]  M. Jetten,et al.  Genomic Analysis Indicates the Presence of an Asymmetric Bilayer Outer Membrane in Planctomycetes and Verrucomicrobia , 2012, Front. Microbio..

[28]  Felix J. B. Bäuerlein,et al.  Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography , 2012, Proceedings of the National Academy of Sciences.

[29]  A. Biegert,et al.  HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment , 2011, Nature Methods.

[30]  Mark Bates,et al.  Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging , 2011, Nature Methods.

[31]  Harvey T. McMahon,et al.  Molecular mechanism and physiological functions of clathrin-mediated endocytosis , 2011, Nature Reviews Molecular Cell Biology.

[32]  F. Glöckner,et al.  Characterization of Planctomyces limnophilus and Development of Genetic Tools for Its Manipulation Establish It as a Model Species for the Phylum Planctomycetes , 2011, Applied and Environmental Microbiology.

[33]  J. Fuerst,et al.  Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function , 2011, Nature Reviews Microbiology.

[34]  P. Vantourout,et al.  Ecto-F₁-ATPase: a moonlighting protein complex and an unexpected apoA-I receptor. , 2010, World journal of gastroenterology.

[35]  A. Jermy.  Evolution: Bacterial endocytosis uncovered , 2010, Nature Reviews Microbiology.

[36]  P. Forterre,et al.  Bacteria with a eukaryotic touch: A glimpse of ancient evolution? , 2010, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Josef D. Franke,et al.  Endocytosis-like protein uptake in the bacterium Gemmata obscuriglobus , 2010, Proceedings of the National Academy of Sciences.

[38]  E. V. van Donselaar,et al.  Intracellular localization of membrane-bound ATPases in the compartmentalized anammox bacterium ‘Candidatus Kuenenia stuttgartiensis’ , 2010, Molecular microbiology.

[39]  Martin Ester,et al.  PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes , 2010, Bioinform..

[40]  Josef D. Franke,et al.  The Compartmentalized Bacteria of the Planctomycetes-Verrucomicrobia-Chlamydiae Superphylum Have Membrane Coat-Like Proteins , 2010, PLoS biology.

[41]  R. Webb,et al.  The cell cycle of the planctomycete Gemmata obscuriglobus with respect to cell compartmentalization , 2009, BMC Cell Biology.

[42]  G. Jensen,et al.  An Improved Cryogen for Plunge Freezing , 2008, Microscopy and Microanalysis.

[43]  M. Wagner,et al.  The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. , 2006, Current opinion in biotechnology.

[44]  Friedrich Förster,et al.  TOM software toolbox: acquisition and analysis for electron tomography. , 2005, Journal of structural biology.

[45]  H. Nikaido.  Molecular Basis of Bacterial Outer Membrane Permeability Revisited , 2003, Microbiology and Molecular Biology Reviews.

[46]  Itzhak Fishov,et al.  Visualization of membrane domains in Escherichia coli , 1999, Molecular microbiology.

[47]  M. Lindsay,et al.  Pirellulosomes: a new type of membrane-bounded cell compartment in planctomycete bacteria of the genus Pirellula. , 1997, Microbiology.

[48]  A. Plückthun,et al.  Protein folding in the periplasm of Escherichia coli , 1994, Molecular microbiology.

[49]  M. Bayer,et al.  Zones of membrane adhesion in the cryofixed envelope of Escherichia coli. , 1991, Journal of structural biology.

[50]  R. Webb,et al.  Membrane-bounded nucleoid in the eubacterium Gemmata obscuriglobus. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[51]  W. Cook,et al.  Compartmentalization of the periplasmic space at division sites in gram-negative bacteria , 1986, Journal of bacteriology.

[52]  W. Liesack,et al.  Chemical composition of the peptidoglycan-free cell envelopes of budding bacteria of the Pirella/Planctomyces group , 1986, Archives of Microbiology.

[53]  R. Murphy.  Analysis and isolation of endocytic vesicles by flow cytometry and sorting: demonstration of three kinetically distinct compartments involved in fluid-phase endocytosis. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[54]  P. Hirsch,et al.  Cell wall studies on budding bacteria of the Planctomyces/Pasteuria group and on a Prosthecomicrobium sp. , 1984, Archives of Microbiology.

[55]  D. Wessel,et al.  A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. , 1984, Analytical biochemistry.

[56]  H. Shio,et al.  Polypeptide and phospholipid composition of the membrane of rat liver peroxisomes: comparison with endoplasmic reticulum and mitochondrial membranes , 1982, The Journal of cell biology.

[57]  Y. Fujiki,et al.  Isolation of intracellular membranes by means of sodium carbonate treatment: application to endoplasmic reticulum , 1982, The Journal of cell biology.

[58]  H. Tedeschi,et al.  Mitochondrial membrane potential: evidence from studies with a fluorescent probe. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[59]  P. Hirsch.  Two Identical Genera of Budding and Stalked Bacteria: Planctomyces Gimesi 1924 and Blastocaulis Henrici and Johnson 1935 , 1972 .

[60]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[61]  D. Devos,et al.  Planctomycetes , 2019, Reference Module in Life Sciences.

[62]  Muriel C. F. van Teeseling.  Cell biology of anammox Planctomycetes and methanotrophic Verrucomicrobia , 2016 .

[63]  Zofia Magnowska,et al.  Membrane proteomics of Pseudomonas aeruginosa. , 2014, Methods in molecular biology.

[64]  M. Jogler,et al.  Toward the Development of Genetic Tools for Planctomycetes , 2013 .

[65]  W. Margolin,et al.  Green fluorescent protein as a reporter for macromolecular localization in bacterial cells. , 2000, Methods.

[66]  J R Kremer,et al.  Computer visualization of three-dimensional image data using IMOD. , 1996, Journal of structural biology.