Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome

[1]  P. McGorry,et al.  Longer-term outcome in the prevention of psychotic disorders by the Vienna omega-3 study , 2015, Nature Communications.

[2]  Chih-Yu Chen,et al.  Omega-3 Fatty Acid Intervention Suppresses Lipopolysaccharide-Induced Inflammation and Weight Loss in Mice , 2015, Marine drugs.

[3]  E. Kallay,et al.  Role of proinflammatory cytokines on expression of vitamin D metabolism and target genes in colon cancer cells , 2014, The Journal of Steroid Biochemistry and Molecular Biology.

[4]  K. Badenhoop,et al.  Vitamin D Promotes Vascular Regeneration , 2014, Circulation.

[5]  M. Mollica,et al.  Differential Effects of High-Fish Oil and High-Lard Diets on Cells and Cytokines Involved in the Inflammatory Process in Rat Insulin-Sensitive Tissues , 2014, International journal of molecular sciences.

[6]  Susumu Goto,et al.  Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..

[7]  J. Estellé,et al.  Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition , 2013, BMC Genomics.

[8]  P. Zahradka,et al.  A diet high in α-linolenic acid and monounsaturated fatty acids attenuates hepatic steatosis and alters hepatic phospholipid fatty acid profile in diet-induced obese rats. , 2013, Prostaglandins, leukotrienes, and essential fatty acids.

[9]  Erik Willems,et al.  The need for transparency and good practices in the qPCR literature , 2013, Nature Methods.

[10]  S. Hoag,et al.  Evaluation of Docosahexaenoic Acid in a Dog Model of Hypertension Induced Left Ventricular Hypertrophy , 2013, Journal of Cardiovascular Translational Research.

[11]  Y. Duan,et al.  n-6:n-3 PUFA ratio is involved in regulating lipid metabolism and inflammation in pigs , 2013, British Journal of Nutrition.

[12]  K. Gutkowska,et al.  Effect of dietary linseed and rapeseed supplementation on fatty acid profiles in the ostrich. Part 1. Muscles , 2013 .

[13]  E. Nowakowska-Zajdel,et al.  [Nutrigenomics--bioactive dietary components]. , 2013, Postepy higieny i medycyny doswiadczalnej.

[14]  Sean R. Davis,et al.  NCBI GEO: archive for functional genomics data sets—update , 2012, Nucleic Acids Res..

[15]  Jan Hellemans,et al.  Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications. , 2013, Methods.

[16]  Gary D Bader,et al.  A travel guide to Cytoscape plugins , 2012, Nature Methods.

[17]  J. Estellé,et al.  Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition , 2012, BMC Genomics.

[18]  B. Lands.  Consequences of Essential Fatty Acids , 2012, Nutrients.

[19]  Jian Ye,et al.  Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction , 2012, BMC Bioinformatics.

[20]  Michael Müller,et al.  Human nutrigenomics of gene regulation by dietary fatty acids. , 2012, Progress in lipid research.

[21]  Ben van Ommen,et al.  Transcriptomic Coordination in the Human Metabolic Network Reveals Links between n-3 Fat Intake, Adipose Tissue Gene Expression and Metabolic Health , 2011, PLoS Comput. Biol..

[22]  G. Shu,et al.  A Comprehensive Expression Profile of MicroRNAs in Porcine Pituitary , 2011, PloS one.

[23]  Wanbo Li,et al.  A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing , 2011, BMC Genomics.

[24]  D. Jump.  Fatty acid regulation of hepatic lipid metabolism , 2011, Current opinion in clinical nutrition and metabolic care.

[25]  M. Kamyczek,et al.  Selection of reference genes for gene expression studies in porcine hepatic tissue using quantitative real-time polymerase chain reaction , 2011 .

[26]  R. Rodrigo,et al.  Biosynthesis and bioavailability of long-chain polyunsaturated fatty acids in non-alcoholic fatty liver disease. , 2010, Progress in lipid research.

[27]  H. Weiler,et al.  Long-chain polyunsaturated fatty acids: selected mechanisms of action on bone. , 2010, Progress in lipid research.

[28]  A. Salter,et al.  Regulation of hepatic gene expression by saturated fatty acids , 2010, Prostaglandins, leukotrienes, and essential fatty acids.

[29]  W. Huber,et al.  which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .

[30]  W. Ratnayake,et al.  Fat and Fatty Acid Terminology, Methods of Analysis and Fat Digestion and Metabolism: A Background Review Paper , 2009, Annals of Nutrition and Metabolism.

[31]  J. Mourot,et al.  Effect of a linseed diet on lipid composition, lipid peroxidation and consumer evaluation of French fresh and cooked pork meats. , 2009, Meat science.

[32]  A. Moorman,et al.  Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data , 2009, Nucleic acids research.

[33]  S. Cunnane,et al.  alpha-Linolenic acid supplementation and conversion to n-3 long-chain polyunsaturated fatty acids in humans. , 2009, Prostaglandins, leukotrienes, and essential fatty acids.

[34]  Brad T. Sherman,et al.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.

[35]  D. Maes,et al.  Peripartal feeding strategy with different n-6: n-3 ratios in sows: effects on sows' performance, inflammatory and periparturient metabolic parameters. , 2008, The British journal of nutrition.

[36]  A. Sonnenberg,et al.  Binding of soluble fibronectin to integrin α5β1 – link to focal adhesion redistribution and contractile shape , 2008, Journal of Cell Science.

[37]  M. Diez,et al.  Liver lipid metabolism. , 2008, Journal of animal physiology and animal nutrition.

[38]  R. Schneiter,et al.  Lipid signalling in disease , 2008, Nature Reviews Molecular Cell Biology.

[39]  Brad T. Sherman,et al.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.

[40]  P. Clavien,et al.  Omega 3 - Omega 6: What is right for the liver? , 2007, Journal of hepatology.

[41]  N. Roy,et al.  Nutrigenomics applied to an animal model of Inflammatory Bowel Diseases: transcriptomic analysis of the effects of eicosapentaenoic acid- and arachidonic acid-enriched diets. , 2007, Mutation research.

[42]  J. Lunney.  Advances in Swine Biomedical Model Genomics , 2007, International journal of biological sciences.

[43]  S. Cirera,et al.  Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR , 2007, BMC Molecular Biology.

[44]  W. Harris,et al.  Tissue omega-6/omega-3 fatty acid ratio and risk for coronary artery disease. , 2006, The American journal of cardiology.

[45]  P. Chomczyński,et al.  The single-step method of RNA isolation by acid guanidinium thiocyanate–phenol–chloroform extraction: twenty-something years on , 2006, Nature Protocols.

[46]  L. Lind,et al.  Factor analysis of fatty acids in serum lipids as a measure of dietary fat quality in relation to the metabolic syndrome in men. , 2006, The American journal of clinical nutrition.

[47]  W. Bergen,et al.  Comparative aspects of lipid metabolism: impact on contemporary research and use of animal models. , 2005, The Journal of nutrition.

[48]  Rui Shi,et al.  Facile means for quantifying microRNA expression by real-time PCR. , 2005, BioTechniques.

[49]  P. Calder,et al.  Conversion of alpha-linolenic acid to longer-chain polyunsaturated fatty acids in human adults. , 2005, Reproduction, nutrition, development.

[50]  A. Aro.  Fatty acid composition of serum lipids: is this marker of fat intake still relevant for identifying metabolic and cardiovascular disorders? , 2003, Nutrition, metabolism, and cardiovascular diseases : NMCD.

[51]  A. Moorman,et al.  Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data , 2003, Neuroscience Letters.

[52]  Jason E. Stewart,et al.  Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.

[53]  M. D. de Pablo,et al.  Modulatory effects of dietary lipids on immune system functions , 2000, Immunology and cell biology.

[54]  J. Ntambi.  Regulation of stearoyl-CoA desaturase by polyunsaturated fatty acids and cholesterol. , 1999, Journal of lipid research.

[55]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[56]  P. Chomczyński,et al.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. , 1987, Analytical biochemistry.

[57]  J. Folch,et al.  A simple method for the isolation and purification of total lipides from animal tissues. , 1957, The Journal of biological chemistry.