Functional confidence bands for lichen biodiversity profiles: A case study in Tuscany region (central Italy)

Biomonitoring techniques are widely used to assess environmental damages through the changes occurring in the composition of species communities. Among the living organisms used as bioindicators, epiphytic lichens, are recognized as reliable indicators of air pollution. However, lichen biodiversity studies are generally based on the analysis of a scalar measure that omits the species composition. For this reason, we propose to analyze lichen data through diversity profiles and the functional data analysis approach. Indeed, diversity profiles may be naturally considered as functional data because they are expressed as functions of the species abundance vector in a fixed domain. The peculiarity of these data is that the functional space is constituted by a set of curves belonging to the same family. In this context, simultaneous confidence bands are obtained for the mean diversity profile through the Karhunen-Love KL decomposition. The novelty of our method lies in exploiting the known form of the function underlying the data. This allows us to work directly on the functional space by avoiding smoothing techniques. The confidence band procedure is applied to a real data set concerning lichen data in Tuscany region central Italy. Confidence bands functional data analysis intrinsic diversity profile lichen data mean function KL expansion.

[1]  S. A. Gattone,et al.  Non‐parametric tests and confidence regions for intrinsic diversity profiles of ecological populations , 2003 .

[2]  James H. Clarke,et al.  Determining Environmental Impacts for Sensitive Species: Using Iconic Species as Bioindicators for Management and Policy , 2013 .

[3]  M. Hill Diversity and Evenness: A Unifying Notation and Its Consequences , 1973 .

[4]  H. Scheffé A METHOD FOR JUDGING ALL CONTRASTS IN THE ANALYSIS OF VARIANCE , 1953 .

[5]  B. Silverman,et al.  Estimating the mean and covariance structure nonparametrically when the data are curves , 1991 .

[6]  Multivariate bootstrap confidence regions for abundance vector using , 2004, Environmental and Ecological Statistics.

[7]  Lijian Yang,et al.  Simultaneous inference for the mean function based on dense functional data , 2012, Journal of nonparametric statistics.

[8]  Kari Karhunen,et al.  Über lineare Methoden in der Wahrscheinlichkeitsrechnung , 1947 .

[9]  Tonio Di Battista,et al.  Clustering functional data on convex function spaces , 2016 .

[10]  J. Richmond A General Method for Constructing Simultaneous Confidence Intervals , 1982 .

[11]  L. Fattorini,et al.  Inference on intrinsic diversity profiles of biological populations , 1999 .

[12]  L. Fattorini,et al.  The use of replicated plot, line and point sampling for estimating species abundance and ecological diversity , 1998, Environmental and Ecological Statistics.

[13]  Ganapati P. Patil,et al.  12 Ecological diversity and forest management , 1994, Environmental Statistics.

[14]  Q. Shao,et al.  A Simultaneous Confidence Band for Dense Longitudinal Regression , 2014, Statistica Sinica.

[15]  C. Crainiceanu,et al.  Corrected Confidence Bands for Functional Data Using Principal Components , 2013, Biometrics.

[16]  P. Nimis,et al.  Lichens, air pollution and lung cancer , 1997, Nature.

[17]  Tonio Di Battista,et al.  A functional approach to diversity profiles , 2009 .

[18]  T. Battista Diversity index estimation by adaptive sampling , 2002 .

[19]  E. Mammen Nonparametric regression under qualitative smoothness assumptions , 1991 .

[20]  A. Cohen,et al.  Air Pollution and Lung Cancer , 1999 .

[21]  S. A. Gattone,et al.  Simultaneous inference on diversity of biological communities , 2004 .

[22]  H. D. Brunk,et al.  Statistical inference under order restrictions : the theory and application of isotonic regression , 1973 .

[23]  O. W. Purvis,et al.  MAPPING LICHEN DIVERSITY AS AN INDICATOR OF ENVIRONMENTAL QUALITY , 2002 .

[24]  Tonio Di Battista,et al.  Adaptive cluster sampling with a data driven stopping rule , 2011, Stat. Methods Appl..

[25]  G. Patil,et al.  Diversity as a Concept and its Measurement , 1982 .

[26]  David Degras Asymptotics for the nonparametric estimation of the mean function of a random process , 2008 .

[27]  J. Ramsay Monotone Regression Splines in Action , 1988 .

[28]  A generalized delta method with applications to intrinsic diversity profiles , 2000 .

[29]  Frédéric Ferraty,et al.  Nonparametric Functional Data Analysis: Theory and Practice (Springer Series in Statistics) , 2006 .

[30]  H. Müller,et al.  Functional Data Analysis for Sparse Longitudinal Data , 2005 .

[31]  Tonio Di Battista,et al.  Environmental monitoring through functional biodiversity tools , 2016 .