Cholesterol Barges as Programmable Membrane-Exploring Agents

Alexander Johnson-Buck, Shuoxing Jiang, Hao Yan, and Nils G. Walter* Single Molecule Analysis Group, Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109-1055, United States, The Biodesign Institute, Arizona State University, Tempe, Arizona 85287, United States, and Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona 85287, United States

[1]  E A Dratz,et al.  The molecular mechanism of visual excitation and its relation to the structure and composition of the rod outer segment. , 1987, Annual review of physiology.

[2]  Marya Lieberman,et al.  Deposition of DNA rafts on cationic SAMs on silicon [100]. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[3]  M. Poo,et al.  Rates of membrane-associated reactions: reduction of dimensionality revisited , 1986, The Journal of cell biology.

[4]  Keisuke Kawakami,et al.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å , 2011, Nature.

[5]  E. Greene,et al.  Supported lipid bilayers and DNA curtains for high-throughput single-molecule studies. , 2011, Methods in molecular biology.

[6]  Anthony J. Manzo,et al.  Do-it-yourself guide: how to use the modern single-molecule toolkit , 2008, Nature Methods.

[7]  L. Stryer,et al.  Cyclic GMP cascade of vision. , 1986, Annual review of neuroscience.

[8]  Hao Yan,et al.  Multifactorial modulation of binding and dissociation kinetics on two-dimensional DNA nanostructures. , 2013, Nano letters.

[9]  N. Walter,et al.  A rugged free energy landscape separates multiple functional RNA folds throughout denaturation , 2008, Nucleic acids research.

[10]  M. Poo,et al.  Contact-induced redistribution of specific membrane components: local accumulation and development of adhesion , 1986, The Journal of cell biology.

[11]  J. Lavergne,et al.  Restricted diffusion in photosynthetic membranes. , 1991, Trends in biochemical sciences.

[12]  P. Rothemund.  Folding DNA to create nanoscale shapes and patterns , 2006, Nature.

[13]  Petra Schwille,et al.  Switchable domain partitioning and diffusion of DNA origami rods on membranes. , 2013, Faraday discussions.

[14]  Lei Wang,et al.  Molecular behavior of DNA origami in higher-order self-assembly. , 2010, Journal of the American Chemical Society.

[15]  T. Lamb,et al.  Gain and kinetics of activation in the G-protein cascade of phototransduction. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Shawna L. Hiley,et al.  Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis. , 2008, Journal of molecular biology.

[17]  P. Koumoutsakos,et al.  Feature point tracking and trajectory analysis for video imaging in cell biology. , 2005, Journal of structural biology.

[18]  J. Schlessinger.  The mechanism and role of hormone-induced clustering of membrane receptors , 1980 .

[19]  Colin Echeverría Aitken,et al.  An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. , 2008, Biophysical journal.

[20]  J. Kinet,et al.  How antibodies work: focus on Fc receptors , 1988, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[21]  K. Edler,et al.  DNA binding to zwitterionic model membranes. , 2010, Langmuir : the ACS journal of surfaces and colloids.

[22]  Eric C Greene,et al.  Organized arrays of individual DNA molecules tethered to supported lipid bilayers. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[23]  D. Grebenkov,et al.  Time-averaged MSD of Brownian motion , 2012, 1205.2100.

[24]  C. Mullineaux,et al.  Mobility of photosynthetic complexes in thylakoid membranes , 1997, Nature.

[25]  D. Axelrod.  Lateral motion of membrane proteins and biological function , 2005, The Journal of Membrane Biology.

[26]  Anthony J. Manzo,et al.  A bird's eye view tracking slow nanometer-scale movements of single molecular nano-assemblies. , 2010, Methods in enzymology.

[27]  C. Heldin,et al.  Dimerization of cell surface receptors in signal transduction , 1995, Cell.

[28]  C. Hackenbrock,et al.  The random collision model and a critical assessment of diffusion and collision in mitochondrial electron transport , 1986, Journal of bioenergetics and biomembranes.

[29]  G. Lenaz.  Role of mobility of redox components in the inner mitochondrial membrane , 1988, The Journal of Membrane Biology.

[30]  S. Howorka,et al.  Self-assembled DNA nanopores that span lipid bilayers. , 2013, Nano letters.

[31]  B. Baird,et al.  Antigen-mediated IGE receptor aggregation and signaling: a window on cell surface structure and dynamics. , 1996, Annual review of biophysics and biomolecular structure.

[32]  D. Y. Zhang,et al.  Control of DNA strand displacement kinetics using toehold exchange. , 2009, Journal of the American Chemical Society.

[33]  R. Hochstrasser,et al.  Wide-field subdiffraction imaging by accumulated binding of diffusing probes , 2006, Proceedings of the National Academy of Sciences.

[34]  J. Eisinger,et al.  Lateral mobility of lipid analogues and GPI-anchored proteins in supported bilayers determined by fluorescent bead tracking , 1993, The Journal of Membrane Biology.

[35]  Rahul Roy,et al.  A practical guide to single-molecule FRET , 2008, Nature Methods.

[36]  Nathan Nelson,et al.  The structure of a plant photosystem I supercomplex at 3.4 Å resolution , 2007, Nature.

[37]  Michael D. Abràmoff,et al.  Image processing with ImageJ , 2004 .

[38]  J. Falke,et al.  Lateral diffusion of peripheral membrane proteins on supported lipid bilayers is controlled by the additive frictional drags of (1) bound lipids and (2) protein domains penetrating into the bilayer hydrocarbon core. , 2013, Chemistry and physics of lipids.

[39]  T. G. Martin,et al.  Synthetic Lipid Membrane Channels Formed by Designed DNA Nanostructures , 2012, Science.

[40]  Premnath,et al.  Poly(ethylene oxide) Grafted to Silicon Surfaces: Grafting Density and Protein Adsorption. , 1998, Macromolecules.

[41]  Vivek V. Thacker,et al.  Lipid-Bilayer-Spanning DNA Nanopores with a Bifunctional Porphyrin Anchor , 2013, Angewandte Chemie.

[42]  Akihiro Kusumi,et al.  Ultrafine membrane compartments for molecular diffusion as revealed by single molecule techniques. , 2004, Biophysical journal.

[43]  C. Zimmer,et al.  QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ , 2010, Nature Methods.