A kaleidoscopic view of the Arabidopsis core cell cycle interactome.
暂无分享,去创建一个
Eugenia Russinova | Jelle Van Leene | G. De Jaeger | L. De Veylder | E. Russinova | Jelle Van Leene | Geert De Jaeger | Lieven De Veylder | Joanna Boruc | J. Boruc
[1] Maria Novatchkova,et al. Turning Meiosis into Mitosis , 2009, PLoS biology.
[2] A. Straight,et al. RB's original CIN? , 2010, Genes & development.
[3] Luke E. Berchowitz,et al. The CYCLIN-A CYCA1;2/TAM Is Required for the Meiosis I to Meiosis II Transition and Cooperates with OSD1 for the Prophase to First Meiotic Division Transition , 2010, PLoS genetics.
[4] C. Gutiérrez,et al. A cell-cycle-regulated kinase activity phosphorylates plant retinoblastoma protein and contains, in Arabidopsis, a CDKA/cyclin D complex. , 2001, The Plant journal : for cell and molecular biology.
[5] Z. Magyar,et al. The Medicago CDKC;1-CYCLINT;1 kinase complex phosphorylates the carboxy-terminal domain of RNA polymerase II and promotes transcription. , 2005, The Plant journal : for cell and molecular biology.
[6] N. Nagata,et al. An Arabidopsis Cell Cycle–Dependent Kinase-Related Gene, CDC2b, Plays a Role in Regulating Seedling Growth in Darkness , 1999, Plant Cell.
[7] P. Genschik,et al. First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase. , 2003, Trends in plant science.
[8] J. Rothberg,et al. Gaining confidence in high-throughput protein interaction networks , 2004, Nature Biotechnology.
[9] S. Fields,et al. A novel genetic system to detect proteinprotein interactions , 1989, Nature.
[10] D. Inzé,et al. B1-Type Cyclin-Dependent Kinases Are Essential for the Formation of Stomatal Complexes in Arabidopsis thaliana , 2004, The Plant Cell Online.
[11] Linda Hanley-Bowdoin,et al. Genome-Wide Analysis of the Core DNA Replication Machinery in the Higher Plants Arabidopsis and Rice1[W][OA] , 2007, Plant Physiology.
[12] Joshua S Yuan,et al. Plant systems biology comes of age. , 2008, Trends in plant science.
[13] D. Inzé,et al. Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa–DPa transcription factor , 2002, The EMBO journal.
[14] Dirk Inzé,et al. Genome-Wide Identification of Potential Plant E2F Target Genes1[w] , 2005, Plant Physiology.
[15] Michael Gribskov,et al. Protein-Protein Interactions of Tandem Affinity Purified Protein Kinases from Rice , 2009, PloS one.
[16] A. Steinmetz,et al. The Tobacco A-Type Cyclin, Nicta;CYCA3;2, at the Nexus of Cell Division and Differentiation Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.015990. , 2003, The Plant Cell Online.
[17] J. Hopfield,et al. From molecular to modular cell biology , 1999, Nature.
[18] M. Umeda,et al. Arabidopsis D-Type Cyclin CYCD4;1 Is a Novel Cyclin Partner of B2-Type Cyclin-Dependent Kinase1 , 2003, Plant Physiology.
[19] C. Luschnig,et al. Putative Arabidopsis Transcriptional Adaptor Protein (PROPORZ1) is required to modulate histone acetylation in response to auxin , 2010, Proceedings of the National Academy of Sciences.
[20] Claude W. dePamphilis,et al. Genome-Wide Analysis of the Cyclin Family in Arabidopsis and Comparative Phylogenetic Analysis of Plant Cyclin-Like Proteins1[w] , 2004, Plant Physiology.
[21] C. Lamb,et al. Control of root growth and development by cyclin expression , 1996, Nature.
[22] Hao Jiang,et al. A Rice Kinase-Protein Interaction Map1[W][OA] , 2008, Plant Physiology.
[23] Christie S. Chang,et al. The BioGRID interaction database: 2013 update , 2012, Nucleic Acids Res..
[24] Gary D Bader,et al. Analyzing yeast protein–protein interaction data obtained from different sources , 2002, Nature Biotechnology.
[25] L. De Veylder,et al. A replication stress-induced synchronization method for Arabidopsis thaliana root meristems. , 2010, The Plant journal : for cell and molecular biology.
[26] R. Huntley,et al. Cytokinin activation of Arabidopsis cell division through a D-type cyclin. , 1999, Science.
[27] Dirk Inzé,et al. Cell cycle regulation in plant development. , 2006, Annual review of genetics.
[28] Yixing Wang,et al. Progression through Meiosis I and Meiosis II in Arabidopsis Anthers Is Regulated by an A-Type Cyclin Predominately Expressed in Prophase I1 , 2004, Plant Physiology.
[29] Franky R. G. Terras,et al. Functional Analysis of Cyclin-Dependent Kinase Inhibitors of Arabidopsis , 2001, The Plant Cell Online.
[30] A. Barabasi,et al. High-Quality Binary Protein Interaction Map of the Yeast Interactome Network , 2008, Science.
[31] T. Yoshizumi,et al. The A-Type Cyclin CYCA2;3 Is a Key Regulator of Ploidy Levels in Arabidopsis Endoreduplication[W][OA] , 2006, The Plant Cell Online.
[32] M. Umeda,et al. The Plant-Specific Kinase CDKF;1 Is Involved in Activating Phosphorylation of Cyclin-Dependent Kinase-Activating Kinases in Arabidopsis , 2004, The Plant Cell Online.
[33] M. Kreis,et al. Identification of cdc2cAt: a new cyclin-dependent kinase expressed in Arabidopsis thaliana flowers. , 1999, Biochimica et biophysica acta.
[34] J. Raes,et al. Molecular characterization of Arabidopsis PHO80-like proteins, a novel class of CDKA;1-interacting cyclins , 2004, Cellular and Molecular Life Sciences CMLS.
[35] W. Gruissem,et al. Plant retinoblastoma homologues control nuclear proliferation in the female gametophyte , 2004, Nature.
[36] M. Umeda,et al. Control of cell division and transcription by cyclin-dependent kinase-activating kinases in plants. , 2005, Plant & cell physiology.
[37] A. Schnittger,et al. Ectopic B-Type Cyclin Expression Induces Mitotic Cycles in Endoreduplicating Arabidopsis Trichomes , 2002, Current Biology.
[38] D. Inzé,et al. T-Loop Phosphorylation of Arabidopsis CDKA;1 Is Required for Its Function and Can Be Partially Substituted by an Aspartate Residue [W] [OA] , 2007, The Plant Cell Online.
[39] H. Nam,et al. Control of plant germline proliferation by SCFFBL17 degradation of cell cycle inhibitors , 2008, Nature.
[40] G. Cesareni,et al. Comparative interactomics: comparing apples and pears? , 2007, Trends in biotechnology.
[41] D. Inzé,et al. Arabidopsis WEE1 Kinase Controls Cell Cycle Arrest in Response to Activation of the DNA Integrity Checkpoint[W][OA] , 2007, The Plant Cell Online.
[42] A. Schnittger,et al. Ectopic D-type cyclin expression induces not only DNA replication but also cell division in Arabidopsis trichomes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[43] M. Umeda,et al. Diverse phosphoregulatory mechanisms controlling cyclin-dependent kinase-activating kinases in Arabidopsis. , 2006, The Plant journal : for cell and molecular biology.
[44] Rosangela Sozzani,et al. The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis , 2010, Plant Molecular Biology.
[45] Minami Matsui,et al. INCREASED LEVEL OF POLYPLOIDY1, a Conserved Repressor of CYCLINA2 Transcription, Controls Endoreduplication in Arabidopsis[W][OA] , 2006, The Plant Cell Online.
[46] D. Inzé,et al. The Arabidopsis functional homolog of the p34cdc2 protein kinase. , 1991, The Plant cell.
[47] R. Huntley,et al. D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[48] T. Kerppola. Bimolecular fluorescence complementation: visualization of molecular interactions in living cells. , 2008, Methods in cell biology.
[49] L. Farinelli,et al. Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP) , 2010, Nature Protocols.
[50] J. Doonan,et al. A cyclin-dependent protein kinase, CDKC2, colocalizes with and modulates the distribution of spliceosomal components in Arabidopsis. , 2008, The Plant journal : for cell and molecular biology.
[51] T. Matsunaga,et al. A mutation in the uvi4 gene promotes progression of endo-reduplication and confers increased tolerance towards ultraviolet B light. , 2006, The Plant journal : for cell and molecular biology.
[52] Kohei Shimizu,et al. Auxin modulates the transition from the mitotic cycle to the endocycle in Arabidopsis , 2010, Development.
[53] D. Oppenheimer,et al. SIAMESE, a gene controlling the endoreduplication cell cycle in Arabidopsis thaliana trichomes. , 2000, Development.
[54] D. Inzé,et al. The Plant-Specific Cyclin-Dependent Kinase CDKB1;1 and Transcription Factor E2Fa-DPa Control the Balance of Mitotically Dividing and Endoreduplicating Cells in Arabidopsis , 2004, The Plant Cell Online.
[55] Paulo,et al. The Arabidopsís Functional Homolog of the p 34 Protein Kinase , 2002 .
[56] R. Akada,et al. Screening and identification of yeast sequences that cause growth inhibition when overexpressed , 1997, Molecular and General Genetics MGG.
[57] D. Inzé,et al. The DP-E2F-like Gene DEL1 Controls the Endocycle in Arabidopsis thaliana , 2005, Current Biology.
[58] M. Umeda,et al. Differential phosphorylation activities of CDK‐activating kinases in Arabidopsis thaliana , 2003, FEBS letters.
[59] Wenming Wang,et al. HUA ENHANCER3 reveals a role for a cyclin-dependent protein kinase in the specification of floral organ identity in Arabidopsis , 2004, Development.
[60] Alain Guénoche,et al. Clustering proteins from interaction networks for the prediction of cellular functions , 2004, BMC Bioinformatics.
[61] C. Gutiérrez,et al. Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light. , 2002, The Plant cell.
[62] S. Yoshida,et al. Control of in vitro organogenesis by cyclin-dependent kinase activities in plants , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[63] D. Inzé,et al. Novel complexes of cyclin-dependent kinases and a cyclin-like protein from Arabidopsis thaliana with a function unrelated to cell division , 2003, Cellular and Molecular Life Sciences CMLS.
[64] Sebastian Proost,et al. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression , 2009, BMC Genomics.
[65] Eric Bonnet,et al. A Tandem Affinity Purification-based Technology Platform to Study the Cell Cycle Interactome in Arabidopsis thaliana*S , 2007, Molecular & Cellular Proteomics.
[66] D. Inzé,et al. SIAMESE, a Plant-Specific Cell Cycle Regulator, Controls Endoreplication Onset in Arabidopsis thaliana[W] , 2006, The Plant Cell Online.
[67] C. Bergounioux,et al. Interplay between Arabidopsis Activating Factors E2Fb and E2Fa in Cell Cycle Progression and Development1[W] , 2006, Plant Physiology.
[68] W. Gruissem,et al. The RETINOBLASTOMA-RELATED Gene Regulates Stem Cell Maintenance in Arabidopsis Roots , 2005, Cell.
[69] D. Inzé,et al. CKS1At overexpression in Arabidopsis thaliana inhibits growth by reducing meristem size and inhibiting cell-cycle progression. , 2001, The Plant journal : for cell and molecular biology.
[70] F. Berger,et al. Proliferation and cell fate establishment during Arabidopsis male gametogenesis depends on the Retinoblastoma protein , 2009, Proceedings of the National Academy of Sciences.
[71] B. S. Manjunath,et al. Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana , 2010, PLoS biology.
[72] Sandra Orchard,et al. Charting plant interactomes: possibilities and challenges. , 2008, Trends in plant science.
[73] R. Aebersold,et al. Analysis of protein complexes using mass spectrometry , 2007, Nature Reviews Molecular Cell Biology.
[74] Peter Uetz,et al. Benchmarking yeast two‐hybrid systems using the interactions of bacterial motility proteins , 2009, Proteomics.
[75] P. Benfey,et al. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth , 2010, Nature.
[76] Tanya Z. Berardini,et al. The Arabidopsis Information Resource (TAIR): gene structure and function annotation , 2007, Nucleic Acids Res..
[77] D. Inzé,et al. A high-throughput bimolecular fluorescence complementation protein-protein interaction screen identifies functional Arabidopsis CDKA/B-CYCD4/5 complexes , 2010, Plant signaling & behavior.
[78] H. Nakagami,et al. Phosphorylation of Retinoblastoma-Related Protein by the Cyclin D/Cyclin-Dependent Kinase Complex Is Activated at the G1/S-Phase Transition in Tobacco Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.0025 , 2002, The Plant Cell Online.
[79] C. Gutiérrez,et al. Role of an Atypical E2F Transcription Factor in the Control of Arabidopsis Cell Growth and Differentiation , 2004, The Plant Cell Online.
[80] Peter Doerner,et al. Arabidopsis TCP20 links regulation of growth and cell division control pathways. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[81] Y. Zhang,et al. IntAct—open source resource for molecular interaction data , 2006, Nucleic Acids Res..
[82] W. Gruissem,et al. Gametophyte differentiation and imprinting control in plants , 2009, Communicative & integrative biology.
[83] Willy Govaerts,et al. Atypical E2F activity restrains APC/CCCS52A2 function obligatory for endocycle onset , 2008, Proceedings of the National Academy of Sciences.
[84] W. Gruissem,et al. Dosage-Sensitive Function of RETINOBLASTOMA RELATED and Convergent Epigenetic Control Are Required during the Arabidopsis Life Cycle , 2010, PLoS genetics.
[85] L. Hennig,et al. Arabidopsis RETINOBLASTOMA-RELATED Is Required for Stem Cell Maintenance, Cell Differentiation, and Lateral Organ Production[W][OA] , 2010, Plant Cell.
[86] D. Inzé,et al. The Cyclin-Dependent Kinase Inhibitor KRP2 Controls the Onset of the Endoreduplication Cycle during Arabidopsis Leaf Development through Inhibition of Mitotic CDKA;1 Kinase Complexesw⃞ , 2005, The Plant Cell Online.
[87] D. Inzé,et al. A new D-type cyclin of Arabidopsis thaliana expressed during lateral root primordia formation , 1999, Planta.
[88] A. Shinmyō,et al. Phosphorylation of threonine 161 in plant cyclin-dependent kinase A is required for cell division by activation of its associated kinase. , 2007, The Plant Journal.
[89] Benjamin A. Shoemaker,et al. Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners , 2007, PLoS Comput. Biol..
[90] D. Inzé,et al. Dominant negative mutants of the Cdc2 kinase uncouple cell division from iterative plant development. , 1995, The EMBO journal.
[91] J. Forment,et al. Expression of Arabidopsis SR-like splicing proteins confers salt tolerance to yeast and transgenic plants. , 2002, The Plant journal : for cell and molecular biology.
[92] Luis Sanz,et al. The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region , 2009, Proceedings of the National Academy of Sciences.
[93] Guang Li,et al. AtPID: Arabidopsis thaliana protein interactome database—an integrative platform for plant systems biology , 2007, Nucleic Acids Res..
[94] Martin Kuiper,et al. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana , 2010, Molecular systems biology.
[95] Chang‐Deng Hu,et al. Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis , 2003, Nature Biotechnology.
[96] Sean R. Collins,et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae , 2006, Nature.
[97] C. Gutiérrez,et al. The Balance between Cell Division and Endoreplication Depends on E2FC-DPB, Transcription Factors Regulated by the Ubiquitin-SCFSKP2A Pathway in Arabidopsis[W] , 2006, The Plant Cell Online.
[98] A. Schnittger,et al. A positive signal from the fertilization of the egg cell sets off endosperm proliferation in angiosperm embryogenesis , 2006, Nature Genetics.
[99] Carsten Wiuf,et al. The effects of incomplete protein interaction data on structural and evolutionary inferences , 2006, BMC Biology.
[100] Z. Xue,et al. OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice. , 2009, The Plant journal : for cell and molecular biology.
[101] Eva Kondorosi,et al. Arabidopsis Anaphase-Promoting Complexes: Multiple Activators and Wide Range of Substrates Might Keep APC Perpetually Busy , 2005, Cell cycle.
[102] Julie M. Sahalie,et al. An experimentally derived confidence score for binary protein-protein interactions , 2008, Nature Methods.
[103] Yoshihiro Yamaguchi,et al. Roles for the Two-hybrid System in Exploration of the Yeast Protein Interactome* , 2002, Molecular & Cellular Proteomics.
[104] B. Snel,et al. Comparative assessment of large-scale data sets of protein–protein interactions , 2002, Nature.
[105] A. Barabasi,et al. An empirical framework for binary interactome mapping , 2008, Nature Methods.
[106] D. Inzé,et al. CDKB1;1 Forms a Functional Complex with CYCA2;3 to Suppress Endocycle Onset1[W][OA] , 2009, Plant Physiology.
[107] W. Crosby,et al. A plant cyclin-dependent kinase inhibitor gene , 1997, Nature.
[108] D. Inzé,et al. Novel Plant-specific Cyclin-dependent Kinase Inhibitors Induced by Biotic and Abiotic Stresses* , 2007, Journal of Biological Chemistry.
[109] J. Yates,et al. Direct analysis of protein complexes using mass spectrometry , 1999, Nature Biotechnology.
[110] Hong Ma,et al. Homolog interaction during meiotic prophase I in Arabidopsis requires the SOLO DANCERS gene encoding a novel cyclin‐like protein , 2002, The EMBO journal.
[111] Stephane Rombauts,et al. Functional Modules in the Arabidopsis Core Cell Cycle Binary Protein–Protein Interaction Network[W] , 2010, Plant Cell.
[112] I. Takahashi,et al. Two Arabidopsis cyclin A3s possess G1 cyclin-like features , 2010, Plant Cell Reports.
[113] Stephane Rombauts,et al. Genome-Wide Analysis of Core Cell Cycle Genes in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010445. , 2002, The Plant Cell Online.
[114] Wilhelm Gruissem,et al. Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control. , 2005, The Plant journal : for cell and molecular biology.
[115] D. Inzé,et al. Expression of CKS1At in Arabidopsis thaliana indicates a role for the protein in both the mitotic and the endoreduplication cycle , 1999, Planta.
[116] A. Harvey Millar,et al. A Predicted Interactome for Arabidopsis1[C][W][OA] , 2007, Plant Physiology.
[117] D. Inzé,et al. Systematic Localization of the Arabidopsis Core Cell Cycle Proteins Reveals Novel Cell Division Complexes1[W][OA] , 2009, Plant Physiology.
[118] Jing Li,et al. Atypical E2Fs: new players in the E2F transcription factor family. , 2009, Trends in cell biology.
[119] Dirk Inzé,et al. Boosting tandem affinity purification of plant protein complexes. , 2008, Trends in plant science.
[120] F. Berger,et al. Retinoblastoma and Its Binding Partner MSI1 Control Imprinting in Arabidopsis , 2008, PLoS biology.
[121] R. Bhalerao,et al. Differential stage-specific regulation of cyclin-dependent kinases during cambial dormancy in hybrid aspen. , 2004, The Plant journal : for cell and molecular biology.
[122] K. Ljung,et al. Requirement of B2-Type Cyclin-Dependent Kinases for Meristem Integrity in Arabidopsis thaliana[W][OA] , 2008, The Plant Cell Online.