Author ' s personal copy Local MRI analysis approach in the diagnosis of early and prodromal Alzheimer ' s disease ☆

In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier's archiving and manuscript policies are encouraged to visit: Local MRI analysis approach in the diagnosis of early and prodromal Alzheimer's disease ☆ a b s t r a c t a r t i c l e i n f o Keywords: MRI Image analysis Alzheimer's disease Medial temporal lobe Hippocampus Background: Medial temporal lobe (MTL) atrophy is one of the key biomarkers to detect early neuro-degenerative changes in the course of Alzheimer's disease (AD). There is active research aimed at identifying automated methodologies able to extract accurate classification indexes from T1-weighted magnetic resonance images (MRI). Such indexes should be fit for identifying AD patients as early as possible. Subjects: A reference group composed of 144 AD patients and 189 age-matched controls was used to train and test the procedure. It was then applied on a study group composed of 302 MCI subjects, 136 having progressed to clinically probable AD (MCI-converters) and 166 having remained stable or recovered to normal condition after a 24 month follow-up (MCI-non converters). All subjects came from the ADNI database. Methods: We sampled the brain with 7 relatively small volumes, mainly centered on the MTL, and 2 control regions. These volumes were filtered to give intensity and textural MRI-based features. Each filtered region was analyzed with a Random Forest (RF) classifier to extract relevant features, which were subsequently processed with a Support Vector Machine (SVM) classifier. Once a prediction model was trained and tested on the reference group, it was used to compute a classification index (CI) on the MCI cohort and to assess its accuracy in predicting AD conversion in MCI patients. The performance of the classification based on the features extracted by the whole 9 volumes is compared with that derived from each single volume. All experiments were performed using a bootstrap sampling estimation, and classifier performance was cross-validated with a 20-fold paradigm. Results: We identified a restricted set of image features correlated with the conversion to AD. It is shown that most information originate from a small subset of the total available features, and that it is enough to give a reliable assessment. We found multiple, highly localized image-based features which alone are responsible for the overall clinical diagnosis and …

[1]  D. Shen,et al.  Discriminant analysis of longitudinal cortical thickness changes in Alzheimer's disease using dynamic and network features , 2012, Neurobiology of Aging.

[2]  J. Trojanowski,et al.  Prediction of MCI to AD conversion, via MRI, CSF biomarkers, and pattern classification , 2011, Neurobiology of Aging.

[3]  G. Busatto,et al.  Neurostructural predictors of Alzheimer's disease: A meta-analysis of VBM studies , 2011, Neurobiology of Aging.

[4]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[5]  Arthur W. Toga,et al.  Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment , 2011, NeuroImage.

[6]  Vikas Singh,et al.  Predictive markers for AD in a multi-modality framework: An analysis of MCI progression in the ADNI population , 2011, NeuroImage.

[7]  Yutaka Kuroda,et al.  DROP: an SVM domain linker predictor trained with optimal features selected by random forest , 2011, Bioinform..

[8]  Salvador Olmos,et al.  Discrimination of AD and normal subjects from MRI: Anatomical versus statistical regions , 2011, Neuroscience Letters.

[9]  Nick C Fox,et al.  Revising the definition of Alzheimer's disease: a new lexicon , 2010, The Lancet Neurology.

[10]  A. Dale,et al.  Relative capability of MR imaging and FDG PET to depict changes associated with prodromal and early Alzheimer disease. , 2010, Radiology.

[11]  Thomas G. Dietterich,et al.  Haar Random Forest Features and SVM Spatial Matching Kernel for Stonefly Species Identification , 2010, 2010 20th International Conference on Pattern Recognition.

[12]  A. Simmons,et al.  Analysis of regional MRI volumes and thicknesses as predictors of conversion from mild cognitive impairment to Alzheimer's disease , 2010, Neurobiology of Aging.

[13]  C. Jack,et al.  Longitudinal MRI atrophy biomarkers: Relationship to conversion in the ADNI cohort , 2010, Neurobiology of Aging.

[14]  C R Jack,et al.  Serial MRI and CSF biomarkers in normal aging, MCI, and AD , 2010, Neurology.

[15]  A. Dale,et al.  Multi-modal imaging predicts memory performance in normal aging and cognitive decline , 2010, Neurobiology of Aging.

[16]  Ying Wang,et al.  High-dimensional Pattern Regression Using Machine Learning: from Medical Images to Continuous Clinical Variables However, Support Vector Regression Has Some Disadvantages That Become Especially , 2022 .

[17]  Jon Atli Benediktsson,et al.  Sensitivity of Support Vector Machines to Random Feature Selection in Classification of Hyperspectral Data , 2010, IEEE Transactions on Geoscience and Remote Sensing.

[18]  Christian Böhm,et al.  Automated detection of brain atrophy patterns based on MRI for the prediction of Alzheimer's disease , 2010, NeuroImage.

[19]  A. Dale,et al.  Combining MR Imaging, Positron-Emission Tomography, and CSF Biomarkers in the Diagnosis and Prognosis of Alzheimer Disease , 2010, American Journal of Neuroradiology.

[20]  C. Jack,et al.  Hypothetical model of dynamic biomarkers of the Alzheimer's pathological cascade , 2010, The Lancet Neurology.

[21]  A. McKinney,et al.  Automated MRI measures identify individuals with mild cognitive impairment and Alzheimer's disease , 2010 .

[22]  A. Dale,et al.  Subregional neuroanatomical change as a biomarker for Alzheimer's disease , 2009, Proceedings of the National Academy of Sciences.

[23]  Moo K. Chung,et al.  Spatially augmented LPboosting for AD classification with evaluations on the ADNI dataset , 2009, NeuroImage.

[24]  A. Dale,et al.  Structural MRI biomarkers for preclinical and mild Alzheimer's disease , 2009, Human brain mapping.

[25]  Roberto Bellotti,et al.  Automatic analysis of medial temporal lobe atrophy from structural MRIs for the early assessment of Alzheimer disease. , 2009, Medical physics.

[26]  C. Davatzikos Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI , 2009, Alzheimer's & Dementia.

[27]  H. Benali,et al.  Fully automatic hippocampus segmentation and classification in Alzheimer's disease and mild cognitive impairment applied on data from ADNI , 2009, Hippocampus.

[28]  A. Dale,et al.  Alzheimer disease: quantitative structural neuroimaging for detection and prediction of clinical and structural changes in mild cognitive impairment. , 2009, Radiology.

[29]  Norbert Schuff,et al.  Automated mapping of hippocampal atrophy in 1-year repeat MRI data from 490 subjects with Alzheimer's disease, mild cognitive impairment, and elderly controls , 2009, NeuroImage.

[30]  Alan C. Bovik,et al.  Mean squared error: Love it or leave it? A new look at Signal Fidelity Measures , 2009, IEEE Signal Processing Magazine.

[31]  J. Morris,et al.  The Cortical Signature of Alzheimer's Disease: Regionally Specific Cortical Thinning Relates to Symptom Severity in Very Mild to Mild AD Dementia and is Detectable in Asymptomatic Amyloid-Positive Individuals , 2008, Cerebral cortex.

[32]  G. Frisoni,et al.  Morphological hippocampal markers for automated detection of Alzheimer's disease and mild cognitive impairment converters in magnetic resonance images. , 2009, Journal of Alzheimer's disease : JAD.

[33]  Lalit Gupta,et al.  Hybrid SVM - Random Forest classication system for oral cancer screening using LIF spectra , 2008, 2008 19th International Conference on Pattern Recognition.

[34]  Yvan Saeys,et al.  Robust Feature Selection Using Ensemble Feature Selection Techniques , 2008, ECML/PKDD.

[35]  Nick C Fox,et al.  Amnestic Mild Cognitive Impairment: Structural MR Imaging Findings Predictive of Conversion to Alzheimer Disease , 2008, American Journal of Neuroradiology.

[36]  Björn Waske,et al.  Classifying Multilevel Imagery From SAR and Optical Sensors by Decision Fusion , 2008, IEEE Transactions on Geoscience and Remote Sensing.

[37]  S. Resnick,et al.  Detection of prodromal Alzheimer's disease via pattern classification of magnetic resonance imaging , 2008, Neurobiology of Aging.

[38]  Nick C Fox,et al.  Automatic classification of MR scans in Alzheimer's disease. , 2008, Brain : a journal of neurology.

[39]  et al.,et al.  Spatial patterns of brain atrophy in MCI patients, identified via high-dimensional pattern classification, predict subsequent cognitive decline , 2008, NeuroImage.

[40]  Clifford R. Jack,et al.  Alzheimer's disease diagnosis in individual subjects using structural MR images: Validation studies , 2008, NeuroImage.

[41]  Kellie J. Archer,et al.  Empirical characterization of random forest variable importance measures , 2008, Comput. Stat. Data Anal..

[42]  P. Scheltens,et al.  Research criteria for the diagnosis of Alzheimer's disease: revising the NINCDS–ADRDA criteria , 2007, The Lancet Neurology.

[43]  C. Jack,et al.  3D maps from multiple MRI illustrate changing atrophy patterns as subjects progress from mild cognitive impairment to Alzheimer's disease. , 2007, Brain : a journal of neurology.

[44]  S. Santi,et al.  Early detection of Alzheimer’s disease using neuroimaging , 2007, Experimental Gerontology.

[45]  Dinggang Shen,et al.  COMPARE: Classification of Morphological Patterns Using Adaptive Regional Elements , 2007, IEEE Transactions on Medical Imaging.

[46]  Paul M. Thompson,et al.  In vivo neuropathology of the hippocampal formation in AD: A radial mapping MR-based study , 2006, NeuroImage.

[47]  Christophe Ambroise,et al.  Selection bias in working with the top genes in supervised classification of tissue samples , 2006 .

[48]  Alan C. Evans,et al.  Focal decline of cortical thickness in Alzheimer's disease identified by computational neuroanatomy. , 2004, Cerebral cortex.

[49]  H. Braak,et al.  Pattern of brain destruction in Parkinson's and Alzheimer's diseases , 2005, Journal of Neural Transmission.

[50]  Mark W. Woolrich,et al.  Advances in functional and structural MR image analysis and implementation as FSL , 2004, NeuroImage.

[51]  Emanuele Schiavi,et al.  Fully 3D Wavelets MRI Compression , 2004, ISBMDA.

[52]  C. Jack,et al.  Mild cognitive impairment – beyond controversies, towards a consensus: report of the International Working Group on Mild Cognitive Impairment , 2004, Journal of internal medicine.

[53]  Paul M. Thompson,et al.  Mapping hippocampal and ventricular change in Alzheimer disease , 2004, NeuroImage.

[54]  Eero P. Simoncelli,et al.  Image quality assessment: from error visibility to structural similarity , 2004, IEEE Transactions on Image Processing.

[55]  Dinggang Shen,et al.  Morphological classification of brains via high-dimensional shape transformations and machine learning methods , 2004, NeuroImage.

[56]  Tom Bylander,et al.  Estimating Generalization Error on Two-Class Datasets Using Out-of-Bag Estimates , 2002, Machine Learning.

[57]  Jason Weston,et al.  Gene Selection for Cancer Classification using Support Vector Machines , 2002, Machine Learning.

[58]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[59]  Robert P. Sheridan,et al.  Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling , 2003, J. Chem. Inf. Comput. Sci..

[60]  Martin J. Wainwright,et al.  Image denoising using scale mixtures of Gaussians in the wavelet domain , 2003, IEEE Trans. Image Process..

[61]  Arthur W Toga,et al.  The LONI Pipeline Processing Environment , 2003, NeuroImage.

[62]  Aleksandra Pizurica,et al.  A versatile wavelet domain noise filtration technique for medical imaging , 2003, IEEE Transactions on Medical Imaging.

[63]  Kiralee M. Hayashi,et al.  Dynamics of Gray Matter Loss in Alzheimer's Disease , 2003, The Journal of Neuroscience.

[64]  J. Schneider,et al.  Cognitive activity and incident AD in a population-based sample of older persons , 2002, Neurology.

[65]  Kevin M Bradley,et al.  Longitudinal quantitative proton magnetic resonance spectroscopy of the hippocampus in Alzheimer's disease. , 2002, Brain : a journal of neurology.

[66]  S. Resnick,et al.  Measuring Size and Shape of the Hippocampus in MR Images Using a Deformable Shape Model , 2002, NeuroImage.

[67]  Michael J Ackerman,et al.  Engineering and algorithm design for an image processing Api: a technical report on ITK--the Insight Toolkit. , 2002, Studies in health technology and informatics.

[68]  D. Bennett,et al.  MRI-derived entorhinal and hippocampal atrophy in incipient and very mild Alzheimer’s disease☆ ☆ This research was supported by grants P01 AG09466 and P30 AG10161 from the National Institute on Aging, National Institutes of Health. , 2001, Neurobiology of Aging.

[69]  Alan C. Evans,et al.  Volumetry of hippocampus and amygdala with high-resolution MRI and three-dimensional analysis software: minimizing the discrepancies between laboratories. , 2000, Cerebral cortex.

[70]  Robert D. Nowak,et al.  Wavelet-based Rician noise removal for magnetic resonance imaging , 1999, IEEE Trans. Image Process..

[71]  Nick C. Fox,et al.  MR image texture analysis applied to the diagnosis and tracking of Alzheimer's disease , 1998, IEEE Transactions on Medical Imaging.

[72]  Kenneth R. Castleman,et al.  Simplified design of steerable pyramid filters , 1998, ISCAS '98. Proceedings of the 1998 IEEE International Symposium on Circuits and Systems (Cat. No.98CH36187).

[73]  Arthur W. Toga,et al.  A Probabilistic Atlas of the Human Brain: Theory and Rationale for Its Development The International Consortium for Brain Mapping (ICBM) , 1995, NeuroImage.

[74]  Dennis M. Healy,et al.  Two applications of wavelet transforms in magnetic resonance imaging , 1992, IEEE Trans. Inf. Theory.