Surviving Deadly Lung Infections: Innate Host Tolerance Mechanisms in the Pulmonary System

Much research on infectious diseases focuses on clearing the pathogen through the use of antimicrobial drugs, the immune response, or a combination of both. Rapid clearance of pathogens allows for a quick return to a healthy state and increased survival. Pathogen-targeted approaches to combating infection have inherent limitations, including their pathogen-specific nature, the potential for antimicrobial resistance, and poor vaccine efficacy, among others. Another way to survive an infection is to tolerate the alterations to homeostasis that occur during a disease state through a process called host tolerance or resilience, which is independent from pathogen burden. Alterations in homeostasis during infection are numerous and include tissue damage, increased inflammation, metabolic changes, temperature changes, and changes in respiration. Given its importance and sensitivity, the lung is a good system for understanding host tolerance to infectious disease. Pneumonia is the leading cause of death for children under five worldwide. One reason for this is because when the pulmonary system is altered dramatically it greatly impacts the overall health and survival of a patient. Targeting host pathways involved in maintenance of pulmonary host tolerance during infection could provide an alternative therapeutic avenue that may be broadly applicable across a variety of pathologies. In this review, we will summarize recent findings on tolerance to host lung infection. We will focus on the involvement of innate immune responses in tolerance and how an initial viral lung infection may alter tolerance mechanisms in leukocytic, epithelial, and endothelial compartments to a subsequent bacterial infection. By understanding tolerance mechanisms in the lung we can better address treatment options for deadly pulmonary infections.

[1]  J. Whitsett,et al.  Respiratory epithelial cells orchestrate pulmonary innate immunity , 2014, Nature Immunology.

[2]  D. Ferguson,et al.  Oncolytic Group B Adenovirus Enadenotucirev Mediates Non-apoptotic Cell Death with Membrane Disruption and Release of Inflammatory Mediators , 2016, Molecular therapy oncolytics.

[3]  C. Grohé Pneumonie , 2020, DMW - Deutsche Medizinische Wochenschrift.

[4]  W. Ouyang,et al.  IL-22 from conventional NK cells is epithelial regenerative and inflammation protective during influenza infection , 2012, Mucosal Immunology.

[5]  J. Girard,et al.  IL-33: an alarmin cytokine with crucial roles in innate immunity, inflammation and allergy. , 2014, Current opinion in immunology.

[6]  J. Erb-Downward,et al.  Homeostasis and its disruption in the lung microbiome. , 2015, American journal of physiology. Lung cellular and molecular physiology.

[7]  Sonia Akter,et al.  Community acquired bacterial pneumonia: aetiology, laboratory detection and antibiotic susceptibility pattern. , 2014, The Malaysian journal of pathology.

[8]  L. Quinton,et al.  Dynamics of lung defense in pneumonia: resistance, resilience, and remodeling. , 2015, Annual review of physiology.

[9]  Kevin J. McHugh,et al.  Influenza A Exacerbates Staphylococcus aureus Pneumonia by Attenuating IL-1β Production in Mice , 2013, The Journal of Immunology.

[10]  J. Ramirez,et al.  Future Research Directions in Pneumonia. NHLBI Working Group Report , 2018, American journal of respiratory and critical care medicine.

[11]  P. Collins,et al.  Infection of Ciliated Cells by Human Parainfluenza Virus Type 3 in an In Vitro Model of Human Airway Epithelium , 2005, Journal of Virology.

[12]  M. Soares "Nuts and bolts" of disease tolerance. , 2014, Immunity.

[13]  K. Excoffon,et al.  Adenovirus Entry From the Apical Surface of Polarized Epithelia Is Facilitated by the Host Innate Immune Response , 2015, PLoS pathogens.

[14]  F. Aversa,et al.  Microbiota control of a tryptophan–AhR pathway in disease tolerance to fungi , 2014, European journal of immunology.

[15]  Y. Jang,et al.  Rhinovirus infection‐induced alteration of tight junction and adherens junction components in human nasal epithelial cells , 2010, The Laryngoscope.

[16]  T. Decker,et al.  The Influence of Programmed Cell Death in Myeloid Cells on Host Resilience to Infection with Legionella pneumophila or Streptococcus pyogenes , 2016, PLoS pathogens.

[17]  E. Letsiou,et al.  Imatinib attenuates inflammation and vascular leak in a clinically relevant two-hit model of acute lung injury. , 2015, American journal of physiology. Lung cellular and molecular physiology.

[18]  Paul G Thomas,et al.  Influenza and the challenge for immunology , 2006, Nature Immunology.

[19]  Cécile Viboud,et al.  Association between Respiratory Syncytial Virus Activity and Pneumococcal Disease in Infants: A Time Series Analysis of US Hospitalization Data , 2015, PLoS medicine.

[20]  David S Schneider,et al.  Two ways to survive infection: what resistance and tolerance can teach us about treating infectious diseases , 2008, Nature Reviews Immunology.

[21]  M. Iezzi,et al.  Resolvin D1 enhances the resolution of lung inflammation caused by long-term Pseudomonas aeruginosa infection , 2017, Mucosal Immunology.

[22]  T. File,et al.  Epidemiology, microbiology, and treatment considerations for bacterial pneumonia complicating influenza. , 2012, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[23]  B. Marsland,et al.  Host–microorganism interactions in lung diseases , 2014, Nature Reviews Immunology.

[24]  R. Bals,et al.  The innate immune function of airway epithelial cells in inflammatory lung disease , 2015, European Respiratory Journal.

[25]  J. Fahy,et al.  Airway mucus function and dysfunction. , 2010, The New England journal of medicine.

[26]  Q. Jin,et al.  A case report demonstrating the utility of next generation sequencing in analyzing serial samples from the lung following an infection with influenza A (H7N9) virus. , 2016, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[27]  W. Liles,et al.  Immunomodulatory therapy for severe influenza , 2011, Expert review of anti-infective therapy.

[28]  A. Iwasaki,et al.  Microbiota regulates immune defense against respiratory tract influenza A virus infection , 2011, Proceedings of the National Academy of Sciences.

[29]  T. Bartzanas,et al.  Methodologies for Assessing Disease Tolerance in Pigs , 2019, Front. Vet. Sci..

[30]  J. McCullers The co-pathogenesis of influenza viruses with bacteria in the lung , 2014, Nature Reviews Microbiology.

[31]  N. Majó,et al.  Involvement of the different lung compartments in the pathogenesis of pH1N1 influenza virus infection in ferrets , 2016, Veterinary Research.

[32]  B. Narasimhan,et al.  Vitamin A deficiency impairs the immune response to intranasal vaccination and RSV infection in neonatal calves , 2019, Scientific Reports.

[33]  Hualan Chen,et al.  The Immune Adaptor ADAP Regulates Reciprocal TGF-β1-Integrin Crosstalk to Protect from Influenza Virus Infection , 2015, PLoS pathogens.

[34]  Takashi Kojima,et al.  Transmembrane proteins of tight junctions. , 2008, Biochimica et biophysica acta.

[35]  C. Chiu,et al.  IL-10 inhibits neuraminidase-activated TGF-β and facilitates Th1 phenotype during early phase of infection , 2015, Nature Communications.

[36]  A. Gordon,et al.  The role of respiratory viruses in the etiology of bacterial pneumonia , 2016, Evolution, medicine, and public health.

[37]  K. Thong,et al.  Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Staphylococcus aureus , 2013, BioMed research international.

[38]  Lars Råberg,et al.  Decomposing health: tolerance and resistance to parasites in animals , 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.

[39]  W. Mitzner,et al.  Progesterone-Based Therapy Protects Against Influenza by Promoting Lung Repair and Recovery in Females , 2016, PLoS pathogens.

[40]  D. Glikman,et al.  Penicillin-resistant Neisseria meningitidis and pandemic 2009 H1N1 influenza coinfection in a child. , 2012, The Pediatric infectious disease journal.

[41]  E. Roilides,et al.  Non‐Aspergillus fungal infections in chronic granulomatous disease , 2013, Mycoses.

[42]  S. Gill,et al.  Pulmonary macrophage subpopulations in the induction and resolution of acute lung injury. , 2012, American journal of respiratory cell and molecular biology.

[43]  R. Tripp,et al.  Interferon Lambda Upregulates IDO1 Expression in Respiratory Epithelial Cells After Influenza Virus Infection. , 2015, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[44]  F. Imani,et al.  Transforming Growth Factor β Enhances Respiratory Syncytial Virus Replication and Tumor Necrosis Factor Alpha Induction in Human Epithelial Cells , 2007, Journal of Virology.

[45]  D. Murdoch,et al.  Incidence and characteristics of viral community-acquired pneumonia in adults , 2007, Thorax.

[46]  B. Levy,et al.  Resolvins: natural agonists for resolution of pulmonary inflammation. , 2011, Progress in lipid research.

[47]  P. Olaechea,et al.  Epidemiología, diagnóstico y tratamiento de las infecciones fúngicas respiratorias en el paciente crítico , 2013 .

[48]  R. Fouchier,et al.  Transmission routes of respiratory viruses among humans , 2018, Current Opinion in Virology.

[49]  J. Mizgerd Pathogenesis of severe pneumonia: advances and knowledge gaps , 2017, Current opinion in pulmonary medicine.

[50]  P. Bryce,et al.  TGF-β1 Limits the Onset of Innate Lung Inflammation by Promoting Mast Cell–Derived IL-6 , 2013, The Journal of Immunology.

[51]  T. Moraes,et al.  Influenza Infects Lung Microvascular Endothelium Leading to Microvascular Leak: Role of Apoptosis and Claudin-5 , 2012, PloS one.

[52]  T. Gilliam,et al.  Chemokine expression in the early response to injury in human airway epithelial cells , 2018, PloS one.

[53]  N. Van Rooijen,et al.  Excessive Neutrophils and Neutrophil Extracellular Traps Contribute to Acute Lung Injury of Influenza Pneumonitis , 2011, The American Journal of Pathology.

[54]  H. Klenk,et al.  Human and avian influenza viruses target different cell types in cultures of human airway epithelium. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[55]  C. Hall The burgeoning burden of respiratory syncytial virus among children. , 2012, Infectious disorders drug targets.

[56]  L. Wildling,et al.  Distribution of sialic acids on mucins and gels: a defense mechanism. , 2012, Biophysical journal.

[57]  M. Tate,et al.  The Role of Neutrophils during Mild and Severe Influenza Virus Infections of Mice , 2011, PloS one.

[58]  M. Humbert,et al.  The ambition of the European Respiratory Journal: chapter 4 , 2016, European Respiratory Journal.

[59]  Alex K. Heer,et al.  Alveolar Macrophages Are Essential for Protection from Respiratory Failure and Associated Morbidity following Influenza Virus Infection , 2014, PLoS pathogens.

[60]  Chang-Hoon Kim,et al.  The Superiority of IFN‐λ as a Therapeutic Candidate to Control Acute Influenza Viral Lung Infection , 2016, American journal of respiratory cell and molecular biology.

[61]  H. Kiyonari,et al.  The adherens junctions control susceptibility to Staphylococcus aureus α-toxin , 2015, Proceedings of the National Academy of Sciences.

[62]  N. Suttorp,et al.  Dynamics of pulmonary endothelial barrier function in acute inflammation: mechanisms and therapeutic perspectives , 2014, Cell and Tissue Research.

[63]  D. Gruenert,et al.  Rhinovirus disrupts the barrier function of polarized airway epithelial cells. , 2008, American journal of respiratory and critical care medicine.

[64]  Y. Kawaoka,et al.  The Lipid Mediator Protectin D1 Inhibits Influenza Virus Replication and Improves Severe Influenza , 2013, Cell.

[65]  G. Dennis Shanks,et al.  Deaths from Bacterial Pneumonia during 1918–19 Influenza Pandemic , 2008, Emerging infectious diseases.

[66]  K. Karjalainen,et al.  Transient ablation of alveolar macrophages leads to massive pathology of influenza infection without affecting cellular adaptive immunity , 2014, European journal of immunology.

[67]  Jerome J. Schentag,et al.  Costs of treating lower respiratory tract infections. , 2008, American Journal of Managed Care.

[68]  T. Yeo,et al.  Malaria tolerance--for whom the cell tolls? , 2006, Trends in parasitology.

[69]  C. Chiu,et al.  Induction and Subversion of Human Protective Immunity: Contrasting Influenza and Respiratory Syncytial Virus , 2018, Front. Immunol..

[70]  J. Yoong,et al.  "I wouldn't really believe statistics" - Challenges with influenza vaccine acceptance among healthcare workers in Singapore. , 2018, Vaccine.

[71]  Lanjuan Li,et al.  Disordered oropharyngeal microbial communities in H7N9 patients with or without secondary bacterial lung infection , 2017, Emerging microbes & infections.

[72]  Li-yun Huang,et al.  Poly(I:C) Induces Human Lung Endothelial Barrier Dysfunction by Disrupting Tight Junction Expression of Claudin-5 , 2016, PloS one.

[73]  S. Schultz-Cherry,et al.  Influenza virus neuraminidase activates latent transforming growth factor beta , 1996, Journal of virology.

[74]  S. Howie,et al.  The role of macrophages in healing the wounded lung , 2012, International journal of experimental pathology.

[75]  A. Dhamoon,et al.  The Repertoire of Adenovirus in Human Disease: The Innocuous to the Deadly , 2018, Biomedicines.

[76]  I. Amit,et al.  Extracellular Matrix Proteolysis by MT1-MMP Contributes to Influenza-Related Tissue Damage and Mortality. , 2016, Cell host & microbe.

[77]  Weidong Yang,et al.  Erratum to “Biodistribution and SPECT Imaging Study of 99mTc Labeling NGR Peptide in Nude Mice Bearing Human HepG2 Hepatoma” , 2014, BioMed Research International.

[78]  J. Bergelson,et al.  The coxsackievirus and adenovirus receptor is a transmembrane component of the tight junction , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[79]  Shun-Hua Chen,et al.  IL-6 ameliorates acute lung injury in influenza virus infection , 2017, Scientific Reports.

[80]  W. Kuebler,et al.  Influenza-Induced Priming and Leak of Human Lung Microvascular Endothelium upon Exposure to Staphylococcus aureus. , 2015, American journal of respiratory cell and molecular biology.

[81]  A. Noymer,et al.  Influenza Mortality in the United States, 2009 Pandemic: Burden, Timing and Age Distribution , 2013, PloS one.

[82]  Robert George,et al.  Bacterial Pneumonia and Pandemic Influenza Planning , 2008, Emerging infectious diseases.

[83]  B. Fielding,et al.  MERS-CoV: Understanding the Latest Human Coronavirus Threat , 2018, Viruses.

[84]  J. Marwick,et al.  Downregulation of Mcl-1 has anti-inflammatory pro-resolution effects and enhances bacterial clearance from the lung , 2013, Mucosal Immunology.

[85]  H. Kitazawa,et al.  Nasally administered Lactobacillus rhamnosus strains differentially modulate respiratory antiviral immune responses and induce protection against respiratory syncytial virus infection , 2013, BMC Immunology.

[86]  S. Sehrawat,et al.  Immunity and immunopathology to viruses: what decides the outcome? , 2010, Nature Reviews Immunology.

[87]  B. Levy,et al.  Aspirin-triggered resolvin D1 reduces pneumococcal lung infection and inflammation in a viral and bacterial coinfection pneumonia model. , 2017, Clinical science.

[88]  A. Prince,et al.  Airway epithelial cell signaling in response to bacterial pathogens , 2008, Pediatric pulmonology.

[89]  T. Sorrell,et al.  Pneumonia and lung infections due to emerging and unusual fungal pathogens. , 2011, Seminars in respiratory and critical care medicine.

[90]  M. Hendaus,et al.  Virus-induced secondary bacterial infection: a concise review , 2015, Therapeutics and clinical risk management.

[91]  W. Kummer,et al.  Barrier functions and paracellular integrity in human cell culture models of the proximal respiratory unit. , 2009, European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft fur Pharmazeutische Verfahrenstechnik e.V.

[92]  A. Prince,et al.  Innate immunity in the respiratory epithelium. , 2011, American journal of respiratory cell and molecular biology.

[93]  Pieterjan Vanden Boer,et al.  Frequency of antibiotic application drives rapid evolutionary adaptation of Escherichia coli persistence , 2016, Nature Microbiology.

[94]  S. Varga,et al.  Depletion of Alveolar Macrophages Ameliorates Virus-Induced Disease following a Pulmonary Coronavirus Infection , 2014, PloS one.

[95]  Kyle Bittinger,et al.  Topographical continuity of bacterial populations in the healthy human respiratory tract. , 2011, American journal of respiratory and critical care medicine.

[96]  Kimberly M. Davis,et al.  Synergistic stimulation of type I interferons during influenza virus coinfection promotes Streptococcus pneumoniae colonization in mice. , 2011, The Journal of clinical investigation.

[97]  E. Burtseva,et al.  Virus susceptibility and clinical effectiveness of anti-influenza drugs during the 2010-2011 influenza season in Russia. , 2016, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[98]  G. Bertoni,et al.  Post-entry blockade of small ruminant lentiviruses by wild ruminants , 2016, Veterinary Research.

[99]  R. Le Goffic,et al.  Interleukin-22 Immunotherapy during Severe Influenza Enhances Lung Tissue Integrity and Reduces Secondary Bacterial Systemic Invasion , 2018, Infection and Immunity.

[100]  C. Doerschuk Mechanisms of Leukocyte Sequestration in Inflamed Lungs , 2001, Microcirculation.

[101]  H. Klenk,et al.  NS1 Protein of Influenza A Virus Down-Regulates Apoptosis , 2002, Journal of Virology.

[102]  T. Standiford,et al.  Postinfluenza bacterial pneumonia: host defenses gone awry. , 2010, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[103]  D. Metzger,et al.  A Detrimental Effect of Interleukin-10 on Protective Pulmonary Humoral Immunity during Primary Influenza A Virus Infection , 2010, Journal of Virology.

[104]  Melissa Morley,et al.  Economic burden of respiratory infections in an employed population. , 2002, Chest.

[105]  J. Alegre,et al.  Legionella pneumophila. A cause of severe community-acquired pneumonia. , 1991, Chest.

[106]  E. Wouters,et al.  Exposure to common respiratory bacteria alters the airway epithelial response to subsequent viral infection , 2016, Respiratory Research.

[107]  R. Garofalo,et al.  Alveolar macrophages contribute to the pathogenesis of human metapneumovirus infection while protecting against respiratory syncytial virus infection. , 2014, American journal of respiratory cell and molecular biology.

[108]  G. Thallinger,et al.  Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients , 2016, PloS one.

[109]  J. Alcorn,et al.  The role of IL-27 in susceptibility to post-influenza Staphylococcus aureus pneumonia , 2015, Respiratory Research.

[110]  J. Rehg,et al.  Induction of pro- and anti-inflammatory molecules in a mouse model of pneumococcal pneumonia after influenza. , 2007, Comparative medicine.

[111]  J. Singh,et al.  Utilization due to chronic obstructive pulmonary disease and its predictors: a study using the U.S. National Emergency Department Sample (NEDS) , 2016, Respiratory Research.

[112]  B. Thomson,et al.  Viruses and apoptosis , 2001, International journal of experimental pathology.

[113]  S. Itzkovitz,et al.  A systematic view on influenza induced host shutoff , 2016, eLife.

[114]  K. Mills,et al.  Novel mechanism of immunosuppression by influenza virus haemagglutinin: selective suppression of interleukin 12 p35 transcription in murine bone marrow-derived dendritic cells. , 2005, The Journal of general virology.

[115]  Ruslan Medzhitov,et al.  Disease Tolerance as a Defense Strategy , 2012, Science.

[116]  E. Ramsburg,et al.  CCR2-Antagonist Prophylaxis Reduces Pulmonary Immune Pathology and Markedly Improves Survival during Influenza Infection , 2011, The Journal of Immunology.

[117]  T. Foster,et al.  Staphylococcus aureus beta-toxin induces lung injury through syndecan-1. , 2009, The American journal of pathology.

[118]  V. Racaniello,et al.  Changes in Rhinovirus Protein 2C Allow Efficient Replication in Mouse Cells , 2003, Journal of Virology.

[119]  P. Collins,et al.  Respiratory Syncytial Virus Infection of Human Airway Epithelial Cells Is Polarized, Specific to Ciliated Cells, and without Obvious Cytopathology , 2002, Journal of Virology.

[120]  A. Torres,et al.  Community-acquired pneumonia , 2015, The Lancet.

[121]  H. Date,et al.  Protective Effects of Imatinib on Ischemia/Reperfusion Injury in Rat Lung. , 2016, The Annals of thoracic surgery.

[122]  Alison J. Scott,et al.  The TLR4 antagonist Eritoran protects mice from lethal influenza infection , 2013, Nature.

[123]  J. Kolls,et al.  Lung epithelial cells: therapeutically inducible effectors of antimicrobial defense , 2017, Mucosal Immunology.

[124]  B. Lambrecht,et al.  Sustained desensitization to bacterial Toll-like receptor ligands after resolutionof respiratory influenza infection , 2008, The Journal of experimental medicine.

[125]  O. Ruuskanen,et al.  Viral pneumonia , 2011, Lancet.

[126]  C. Feldman Pneumonia associated with HIV infection , 2005, Current opinion in infectious diseases.

[127]  H. Tsutsumi,et al.  Regulation of Tight Junctions in Upper Airway Epithelium , 2012, BioMed research international.

[128]  H. Yen,et al.  Host response to influenza virus: protection versus immunopathology. , 2010, Current opinion in immunology.

[129]  Kevin J. McHugh,et al.  IL-22 is essential for lung epithelial repair following influenza infection. , 2013, The American journal of pathology.

[130]  M. Hendricks,et al.  Digging through the Obstruction: Insight into the Epithelial Cell Response to Respiratory Virus Infection in Patients with Cystic Fibrosis , 2016, Journal of Virology.

[131]  L. Kühn,et al.  Metabolic adaptation to tissue iron overload confers tolerance to malaria. , 2012, Cell host & microbe.

[132]  M. Takeichi,et al.  Adherens junction: molecular architecture and regulation. , 2009, Cold Spring Harbor perspectives in biology.

[133]  M. Jordana,et al.  Critical role of natural killer cells in lung immunopathology during influenza infection in mice. , 2012, The Journal of infectious diseases.

[134]  J. Curtis,et al.  Efferocytosis and lung disease. , 2013, Chest.

[135]  A. Rynda-Apple,et al.  Influenza and Bacterial Superinfection: Illuminating the Immunologic Mechanisms of Disease , 2015, Infection and Immunity.

[136]  A. Didierlaurent,et al.  The impact of successive infections on the lung microenvironment , 2007, Immunology.

[137]  P. Ince,et al.  Alveolar Macrophage Apoptosis Contributes to Pneumococcal Clearance in a Resolving Model of Pulmonary Infection 1 , 2003, The Journal of Immunology.

[138]  W. Doyle,et al.  Effect of experimental influenza A virus infection on isolation of Streptococcus pneumoniae and other aerobic bacteria from the oropharynges of allergic and nonallergic adult subjects , 1995, Infection and immunity.

[139]  V L Yu,et al.  Legionella as a cause of severe pneumonia. , 2000, Seminars in respiratory and critical care medicine.

[140]  C. Speer,et al.  The Role of Transforming Growth Factor β in Lung Development and Disease , 2004 .

[141]  T. Wright,et al.  Immunopathogenesis of Pneumocystis carinii pneumonia , 2005, Expert Reviews in Molecular Medicine.

[142]  P. Hugenholtz,et al.  Emerging pathogenic links between microbiota and the gut–lung axis , 2016, Nature Reviews Microbiology.

[143]  O. Balemba,et al.  Neutrophils are needed for an effective immune response against pulmonary rat coronavirus infection, but also contribute to pathology. , 2014, The Journal of general virology.

[144]  K. Kuwano,et al.  Autophagy in the pathogenesis of pulmonary disease. , 2013, Internal medicine.

[145]  A. Rudensky,et al.  A Distinct Function of Regulatory T Cells in Tissue Protection , 2015, Cell.

[146]  R. Murphy,et al.  Phosphatidylinositol inhibits respiratory syncytial virus infection , 2015, Journal of Lipid Research.

[147]  Richard B. Brown,et al.  Complications of Viral Influenza , 2008, The American Journal of Medicine.

[148]  T. van der Poll,et al.  IL-10 Is an Important Mediator of the Enhanced Susceptibility to Pneumococcal Pneumonia after Influenza Infection , 2004, The Journal of Immunology.

[149]  A. Williams,et al.  Ménage à trois of bacterial and viral pulmonary pathogens delivers coup de grace to the lung , 2004, Clinical and experimental immunology.

[150]  P. Kanmani,et al.  Peptidoglycan from Immunobiotic Lactobacillus rhamnosus Improves Resistance of Infant Mice to Respiratory Syncytial Viral Infection and Secondary Pneumococcal Pneumonia , 2017, Front. Immunol..

[151]  K. Gronert,et al.  Systemic Disease during Streptococcus pneumoniae Acute Lung Infection Requires 12-Lipoxygenase–Dependent Inflammation , 2013, The Journal of Immunology.

[152]  D. Fedson Treating influenza with statins and other immunomodulatory agents. , 2013, Antiviral research.

[153]  Christine E. Becker,et al.  Influenza virus damages the alveolar barrier by disrupting epithelial cell tight junctions , 2016, European Respiratory Journal.

[154]  D. Metzger,et al.  Border Patrol Gone Awry: Lung NKT Cell Activation by Francisella tularensis Exacerbates Tularemia-Like Disease , 2015, PLoS pathogens.

[155]  J. Beardsley,et al.  Pulmonary Cryptococcosis , 2015, Seminars in Respiratory and Critical Care Medicine.

[156]  C. Akdis,et al.  Respiratory syncytial virus infection influences tight junction integrity , 2017, Clinical and experimental immunology.

[157]  A Subiel,et al.  An ultra-high gain and efficient amplifier based on Raman amplification in plasma , 2017, Scientific Reports.

[158]  J. Frank,et al.  Pulmonary epithelial barrier function: some new players and mechanisms. , 2015, American journal of physiology. Lung cellular and molecular physiology.

[159]  Samir S. Shah,et al.  Influenza coinfection and outcomes in children with complicated pneumonia. , 2011, Archives of pediatrics & adolescent medicine.

[160]  J. Schafer Tolerance to Plant Disease , 1971 .

[161]  T. van der Poll,et al.  Bench-to-bedside review: Bacterial pneumonia with influenza - pathogenesis and clinical implications , 2010, Critical care.

[162]  M. Hilty,et al.  Lowering the threshold of lung innate immune cell activation alters susceptibility to secondary bacterial superinfection. , 2011, The Journal of infectious diseases.

[163]  R. Schooley,et al.  Influenza A penetrates host mucus by cleaving sialic acids with neuraminidase , 2013, Virology Journal.

[164]  Ruslan Medzhitov,et al.  Role of Tissue Protection in Lethal Respiratory Viral-Bacterial Coinfection , 2013, Science.

[165]  J. Wedzicha,et al.  Effect of Interactions Between Lower Airway Bacterial and Rhinoviral Infection in Exacerbations of COPD , 2006, Chest.

[166]  Kevin J. McHugh,et al.  The inflammasome potentiates influenza/Staphylococcus aureus superinfection in mice. , 2018, JCI insight.

[167]  Hong Li,et al.  Dysregulation of claudin-5 in HIV-induced interstitial pneumonitis and lung vascular injury. Protective role of peroxisome proliferator-activated receptor-γ. , 2014, American journal of respiratory and critical care medicine.

[168]  I. Bechmann,et al.  Control of disease tolerance to malaria by nitric oxide and carbon monoxide. , 2014, Cell reports.

[169]  A. Solé,et al.  Epidemiology, diagnosis and treatment of fungal respiratory infections in the critically ill patient. , 2013, Revista espanola de quimioterapia : publicacion oficial de la Sociedad Espanola de Quimioterapia.

[170]  Robert Peach,et al.  Endothelial Cells Are Central Orchestrators of Cytokine Amplification during Influenza Virus Infection , 2011, Cell.

[171]  Jeffrey D. Morton,et al.  Persistent activation of an innate immune response translates respiratory viral infection into chronic lung disease , 2008, Nature Medicine.

[172]  P. Sly,et al.  Viral bacterial co-infection of the respiratory tract during early childhood. , 2015, FEMS microbiology letters.

[173]  J. McCullers Insights into the Interaction between Influenza Virus and Pneumococcus , 2006, Clinical Microbiology Reviews.

[174]  R. Tufano,et al.  Respiratory failure presenting in H1N1 influenza with Legionnaires disease: two case reports , 2011, Journal of medical case reports.

[175]  Kathryn J. Quigley,et al.  Immune mechanisms and the impact of the disrupted lung microbiome in chronic bacterial lung infection and bronchiectasis , 2013, Clinical and experimental immunology.

[176]  J. Ayres,et al.  Tolerance of infections. , 2012, Annual review of immunology.

[177]  B A Cunha,et al.  The atypical pneumonias: clinical diagnosis and importance , 2006, Clinical Microbiology and Infection.

[178]  Jeannette Guarner,et al.  Comparison of the pathology caused by H1N1, H5N1, and H3N2 influenza viruses. , 2009, Archives of medical research.

[179]  A. Shahangian,et al.  Type I IFNs mediate development of postinfluenza bacterial pneumonia in mice. , 2009, The Journal of clinical investigation.

[180]  韩旭东,et al.  Viral pneumonia , 2004 .

[181]  P. Corris,et al.  IL-1α released from damaged epithelial cells is sufficient and essential to trigger inflammatory responses in human lung fibroblasts , 2013, Mucosal Immunology.

[182]  P. Timms,et al.  Human Chlamydia pneumoniae isolates demonstrate ability to recover infectivity following penicillin treatment whereas animal isolates do not. , 2015, FEMS microbiology letters.

[183]  J. Alcorn,et al.  Influenza A Inhibits Th17-Mediated Host Defense against Bacterial Pneumonia in Mice , 2011, The Journal of Immunology.

[184]  E. Ramsburg,et al.  CCR2+ Monocyte-Derived Dendritic Cells and Exudate Macrophages Produce Influenza-Induced Pulmonary Immune Pathology and Mortality1 , 2008, The Journal of Immunology.

[185]  Michael G. Katze,et al.  Into the Eye of the Cytokine Storm , 2012, Microbiology and Molecular Reviews.

[186]  S. Smirnov,et al.  Lambda Interferon Is the Predominant Interferon Induced by Influenza A Virus Infection In Vivo , 2010, Journal of Virology.

[187]  J. Weiser,et al.  Co-infection subverts mucosal immunity in the upper respiratory tract. , 2012, Current opinion in immunology.

[188]  T. Wakai,et al.  Resolvins and omega three polyunsaturated fatty acids: Clinical implications in inflammatory diseases and cancer. , 2016, World journal of clinical cases.

[189]  Daniel S. Chertow,et al.  Lethal Synergism of 2009 Pandemic H1N1 Influenza Virus and Streptococcus pneumoniae Coinfection Is Associated with Loss of Murine Lung Repair Responses , 2011, mBio.

[190]  E. Wherry,et al.  Innate lymphoid cells promote lung tissue homeostasis following acute influenza virus infection , 2011, Nature immunology.

[191]  S. Shin,et al.  Neutrophil pyroptosis mediates pathology of P. aeruginosa lung infection in the absence of the NADPH oxidase NOX2 , 2016, Mucosal Immunology.

[192]  J. Sirard,et al.  Interleukin-22 Reduces Lung Inflammation during Influenza A Virus Infection and Protects against Secondary Bacterial Infection , 2013, Journal of Virology.

[193]  L. Gong,et al.  Lung epithelial cells are essential effectors of inducible resistance to pneumonia , 2013, Mucosal Immunology.

[194]  Anthony S Fauci,et al.  Predominant role of bacterial pneumonia as a cause of death in pandemic influenza: implications for pandemic influenza preparedness. , 2008, The Journal of infectious diseases.

[195]  Thomas Naderer,et al.  Macrophage cell death in microbial infections , 2016, Cellular microbiology.

[196]  M. Shaw The Next Wave of Influenza Drugs. , 2017, ACS infectious diseases.

[197]  L. Denney,et al.  Epithelial derived TGF-β1 acts as a pro-viral factor in the lung during influenza A infection , 2017, Mucosal Immunology.

[198]  Ralph S. Baric,et al.  Severe Acute Respiratory Syndrome Coronavirus Infection of Human Ciliated Airway Epithelia: Role of Ciliated Cells in Viral Spread in the Conducting Airways of the Lungs , 2005, Journal of Virology.

[199]  C. Turbelin,et al.  Estimation of seasonal influenza vaccine effectiveness using data collected in primary care in France: comparison of the test-negative design and the screening method. , 2017, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

[200]  Shaun P Jackson,et al.  The class II PI 3-kinase, PI3KC2α, links platelet internal membrane structure to shear-dependent adhesive function , 2015, Nature Communications.

[201]  Michael R. Elliott,et al.  Nucleotides released by apoptotic cells act as a find-me signal to promote phagocytic clearance , 2009, Nature.

[202]  C. Beadling,et al.  How do viral infections predispose patients to bacterial infections? , 2004, Current opinion in infectious diseases.

[203]  S. Beinke,et al.  IFNλ is a potent anti‐influenza therapeutic without the inflammatory side effects of IFNα treatment , 2016, EMBO molecular medicine.

[204]  R. Medzhitov,et al.  Stress, inflammation, and defense of homeostasis. , 2014, Molecular cell.

[205]  D. Fedson Treating the host response to emerging virus diseases: lessons learned from sepsis, pneumonia, influenza and Ebola. , 2016, Annals of translational medicine.

[206]  T. Kuiken,et al.  Comparative Pathology of Select Agent Influenza A Virus Infections , 2010, Veterinary pathology.

[207]  S. Johnston,et al.  Rhinovirus infection induces degradation of antimicrobial peptides and secondary bacterial infection in chronic obstructive pulmonary disease. , 2012, American journal of respiratory and critical care medicine.

[208]  Xiang Gao,et al.  Bacterial colonization dampens influenza-mediated acute lung injury via induction of M2 alveolar macrophages , 2013, Nature Communications.

[209]  Christine E. Becker,et al.  Influenza Virus Infects Epithelial Stem/Progenitor Cells of the Distal Lung: Impact on Fgfr2b-Driven Epithelial Repair , 2016, PLoS pathogens.

[210]  J. Jurcisek,et al.  Respiratory syncytial virus‐induced dysregulation of expression of a mucosal β‐defensin augments colonization of the upper airway by non‐typeable Haemophilus influenzae , 2009, Cellular microbiology.

[211]  M. Inouye,et al.  The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development , 2015, Cell Host & Microbe.

[212]  S. Fukushi,et al.  Co‐infection of respiratory bacterium with severe acute respiratory syndrome coronavirus induces an exacerbated pneumonia in mice , 2008, Microbiology and immunology.

[213]  S. Madhi,et al.  Pneumonia in low and middle income countries: progress and challenges , 2013, Thorax.

[214]  D. Low Pandemic planning: Non‐pharmaceutical interventions , 2008, Respirology.

[215]  Xiaoqiang Yu,et al.  The Regulation of Autophagy by Influenza A Virus , 2014, BioMed research international.

[216]  H. Ochiai,et al.  Therapeutic Effect of Anti-Macrophage Inflammatory Protein 2 Antibody on Influenza Virus-Induced Pneumonia in Mice , 2000, Journal of Virology.

[217]  T. Thatcher,et al.  Resolvin D1 Dampens Pulmonary Inflammation and Promotes Clearance of Nontypeable Haemophilus influenzae , 2016, The Journal of Immunology.

[218]  S. Thacker,et al.  An outbreak in 1965 of severe respiratory illness caused by the Legionnaires' disease bacterium. , 1978, The Journal of infectious diseases.

[219]  J. Gern,et al.  Rhinovirus C targets ciliated airway epithelial cells , 2017, Respiratory Research.

[220]  D. Fedson How Will Physicians Respond to the Next Influenza Pandemic? , 2013, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[221]  K. Walters,et al.  1918 pandemic influenza virus and Streptococcus pneumoniae co‐infection results in activation of coagulation and widespread pulmonary thrombosis in mice and humans , 2016, The Journal of pathology.

[222]  M. Geffard,et al.  Aryl hydrocarbon receptor control of a disease tolerance defence pathway , 2014, Nature.

[223]  A. McDermott,et al.  Lung Epithelial Cells Coordinate Innate Lymphocytes and Immunity against Pulmonary Fungal Infection. , 2018, Cell host & microbe.

[224]  R. Albrecht,et al.  Endothelial cell tropism is a determinant of H5N1 pathogenesis in mammalian species , 2017, PLoS pathogens.

[225]  Benjamin H Singer,et al.  Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome , 2016, Nature Microbiology.

[226]  Daniel S. Chertow,et al.  Bacterial coinfection in influenza: a grand rounds review. , 2013, JAMA.

[227]  A. Burlingame,et al.  IQGAP1 is necessary for pulmonary vascular barrier protection in murine acute lung injury and pneumonia. , 2012, American journal of physiology. Lung cellular and molecular physiology.

[228]  Karan Uppal,et al.  Metabolic pathways of lung inflammation revealed by high-resolution metabolomics (HRM) of H1N1 influenza virus infection in mice. , 2016, American journal of physiology. Regulatory, integrative and comparative physiology.

[229]  W. Sligl,et al.  Community-acquired pneumonia , 2014, Current opinion in pulmonary medicine.

[230]  T. Thatcher,et al.  Resolvin D1 Attenuates Polyinosinic-Polycytidylic Acid–Induced Inflammatory Signaling in Human Airway Epithelial Cells via TAK1 , 2014, The Journal of Immunology.

[231]  I. Julkunen,et al.  IFNs activate toll-like receptor gene expression in viral infections , 2001, Genes and Immunity.

[232]  J. McCullers,et al.  Respiratory viruses predisposing to bacterial infections: role of neuraminidase , 2004, The Pediatric infectious disease journal.

[233]  A. Farr,et al.  Respiratory syncytial virus hospitalization outcomes and costs of full-term and preterm infants , 2016, Journal of Perinatology.

[234]  B. Ruf,et al.  Fatal Legionella pneumonia: retrospective examination of lung tissue using direct and indirect fluorescent-antibody methods. , 1987, Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology.

[235]  J. McCullers,et al.  Toll-like receptor 2 mediates fatal immunopathology in mice during treatment of secondary pneumococcal pneumonia following influenza. , 2011, The Journal of infectious diseases.

[236]  A. Prasse,et al.  Health related quality of life in patients with idiopathic pulmonary fibrosis in clinical practice: insights-IPF registry , 2017, Respiratory Research.

[237]  T. Goldmann,et al.  Nontypeable Haemophilus influenzae (NTHi) directly interfere with the regulation of E-cadherin in lung epithelial cells. , 2017, Microbes and infection.

[238]  C. Helms,et al.  Coinfections of Mycoplasma pneumoniae and Legionella pneumophila with influenza A virus , 1983, Journal of clinical microbiology.

[239]  Kelli L Boyd,et al.  Influenza virus primes mice for pneumonia from Staphylococcus aureus. , 2011, The Journal of infectious diseases.

[240]  H. Ochs,et al.  IL-10 Deficiency Unleashes an Influenza-Specific Th17 Response and Enhances Survival against High-Dose Challenge1 , 2009, The Journal of Immunology.

[241]  R M Caldwell,et al.  Tolerance to Cereal Leaf Rusts. , 1958, Science.

[242]  T. Stevens,et al.  New developments in lung endothelial heterogeneity: Von Willebrand factor, P-selectin, and the Weibel-Palade body. , 2010, Seminars in thrombosis and hemostasis.

[243]  B. Robertson,et al.  The Balance of Apoptotic and Necrotic Cell Death in Mycobacterium tuberculosis Infected Macrophages Is Not Dependent on Bacterial Virulence , 2012, PloS one.

[244]  J. Erb-Downward,et al.  The role of the bacterial microbiome in lung disease , 2013, Expert review of respiratory medicine.

[245]  A. Beaudet,et al.  Selectins and neutrophil traffic: margination and Streptococcus pneumoniae-induced emigration in murine lungs , 1996, The Journal of experimental medicine.

[246]  L. Kobzik,et al.  Influenza lung injury: mechanisms and therapeutic opportunities. , 2015, American journal of physiology. Lung cellular and molecular physiology.

[247]  L. Brammer,et al.  Influenza-Associated Pediatric Mortality in the United States: Increase of Staphylococcus aureus Coinfection , 2008, Pediatrics.

[248]  K. Melén,et al.  Inflammatory responses in influenza A virus infection. , 2000, Vaccine.

[249]  F. Culley Natural killer cells in infection and inflammation of the lung , 2009, Immunology.

[250]  M. Tate,et al.  Neutrophils Ameliorate Lung Injury and the Development of Severe Disease during Influenza Infection1 , 2009, The Journal of Immunology.

[251]  Larance Ronsard,et al.  The emerging influenza virus threat: status and new prospects for its therapy and control , 2018, Archives of Virology.

[252]  T. Terashima,et al.  A Case of Influenza B and Mycoplasma pneumoniae Coinfection in an Adult , 2018, Case Reports in Infectious Diseases.

[253]  J. McCullers,et al.  Role of neuraminidase in lethal synergism between influenza virus and Streptococcus pneumoniae. , 2003, The Journal of infectious diseases.

[254]  H. Nishizawa,et al.  Pseudomonas aeruginosa injects type III effector ExoS into epithelial cells through the function of type IV pili , 2015, FEBS letters.

[255]  Hideki Takahashi,et al.  Respiratory Commensal Bacteria Corynebacterium pseudodiphtheriticum Improves Resistance of Infant Mice to Respiratory Syncytial Virus and Streptococcus pneumoniae Superinfection , 2017, Front. Microbiol..