The origin of the alpha-domain intermediate in the folding of hen lysozyme.

Stopped-flow fluorescence and circular dichroism spectroscopy have been used in conjunction with quenched-flow hydrogen exchange labelling, monitored by electrospray ionization mass spectrometry, to compare the refolding kinetics of hen egg-white lysozyme at 20 degrees C and 50 degrees C. At 50 degrees C there is clear evidence for distinct fast and slow refolding populations, as observed at 20 degrees C, although folding occurs significantly more rapidly. The folding process is, however, substantially more cooperative at the higher temperature. In particular, the transient intermediate on the major refolding pathway at 20 degrees C, having persistent native-like structure in the alpha-helical domain of the protein, is not detected by hydrogen exchange labelling at 50 degrees C. In addition, the characteristic maximum in negative ellipticity and the minimum in fluorescence intensity observed in far UV CD and intrinsic fluorescence experiments at 20 degrees C, respectively, are not seen at 50 degrees C. Addition of 2 M NaCl to the refolding buffer at 50 degrees C, however, regenerates both the hydrogen exchange and optical properties associated with the alpha-domain intermediate but has no significant effect on the overall refolding kinetics. Together with previous findings, these results indicate that non-native interactions within the alpha-domain intermediate are directly responsible for the unusual optical properties observed during refolding, and that this intermediate accumulates as a consequence of its intrinsic stability in a folding process where the formation of stable structure in the beta-domain constitutes the rate-limiting step for the majority of molecules.

[1]  Watching protein folding unfold , 1995, Nature Structural Biology.

[2]  A. Chaffotte,et al.  Kinetic resolution of peptide bond and side chain far-UV circular dichroism during the folding of hen egg white lysozyme. , 1992, Biochemistry.

[3]  D. F. Koenig,et al.  Structure of Hen Egg-White Lysozyme: A Three-dimensional Fourier Synthesis at 2 Å Resolution , 1965, Nature.

[4]  C M Dobson,et al.  Understanding how proteins fold: the lysozyme story so far. , 1994, Trends in biochemical sciences.

[5]  C. Dobson Unfolded proteins, compact states and molten globules: Current Opinion in Structural Biology 1992, 2:6–12 , 1992 .

[6]  T. Kiefhaber,et al.  Kinetic traps in lysozyme folding. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[7]  C. Dobson,et al.  Insights into protein folding using physical techniques: studies of lysozyme and alpha-lactalbumin. , 1995, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[8]  R. L. Baldwin The nature of protein folding pathways: The classical versus the new view , 1995, Journal of biomolecular NMR.

[9]  P. A. Evans,et al.  Structure of very early protein folding intermediates: new insights through a variant of hydrogen exchange labelling. , 1996, Folding & design.

[10]  D. Thirumalai,et al.  Kinetics of protein folding: Nucleation mechanism, time scales, and pathways , 1995 .

[11]  H. Scheraga,et al.  Kinetics of folding of guanidine-denatured hen egg white lysozyme and carboxymethyl(Cys6,Cys127)-lysozyme: a stopped-flow absorbance and fluorescence study. , 1994, Biochemistry.

[12]  M. Karplus,et al.  Kinetics of protein folding. A lattice model study of the requirements for folding to the native state. , 1994, Journal of molecular biology.

[13]  S. Radford,et al.  Probing the structure of folding intermediates , 1994 .

[14]  L Mayne,et al.  Primary structure effects on peptide group hydrogen exchange. , 1972, Proteins.

[15]  A. Matagne,et al.  The folding process of hen lysozyme: a perspective from the ‘new view’ , 1998, Cellular and Molecular Life Sciences CMLS.

[16]  T. Kiefhaber,et al.  Three-state model for lysozyme folding: triangular folding mechanism with an energetically trapped intermediate. , 1997, Journal of molecular biology.

[17]  A. Fersht Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[18]  C. Dobson,et al.  Time-resolved biophysical methods in the study of protein folding. , 1996, Current opinion in structural biology.

[19]  F. Schmid Kinetics of unfolding and refolding of single-domain proteins , 1992 .

[20]  C. Dobson,et al.  The folding of hen lysozyme involves partially structured intermediates and multiple pathways , 1992, Nature.

[21]  M. Karplus,et al.  Protein Folding: A Perspective from Theory and Experiment , 1998 .

[22]  P. S. Kim,et al.  Intermediates in the folding reactions of small proteins. , 1990, Annual review of biochemistry.

[23]  C. Dobson,et al.  Comparison of the refolding of hen lysozyme from dimethyl sulfoxide and guanidinium chloride. , 1995, Biochemistry.

[24]  C M Dobson,et al.  Kinetic consequences of the removal of a disulfide bridge on the folding of hen lysozyme. , 1994, Biochemistry.

[25]  Christopher M. Dobson Unfolded proteins, compact states and molten globules , 1992, Current Biology.

[26]  N. Shimamoto,et al.  Identification and characterization of the direct folding process of hen egg-white lysozyme. , 1982, Biochemistry.

[27]  Matthews Cr PATHWAYS OF PROTEIN FOLDING , 1993 .

[28]  O. Ptitsyn,et al.  Molten globule and protein folding. , 1995, Advances in protein chemistry.

[29]  L. Itzhaki,et al.  Solvent isotope effects on the refolding kinetics of hen egg‐white lysozyme , 1996, Protein science : a publication of the Protein Society.

[30]  T. Creighton,et al.  Protein Folding , 1992 .

[31]  M. J. Parker,et al.  An integrated kinetic analysis of intermediates and transition states in protein folding reactions. , 1995, Journal of molecular biology.

[32]  K. Dill,et al.  From Levinthal to pathways to funnels , 1997, Nature Structural Biology.

[33]  K. Kuwajima,et al.  Comparison of the transient folding intermediates in lysozyme and alpha-lactalbumin. , 1985, Biochemistry.

[34]  A. Fink Compact intermediate states in protein folding. , 1995, Annual review of biophysics and biomolecular structure.

[35]  L A Mirny,et al.  Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model. , 1996, Folding & design.

[36]  C M Dobson,et al.  Fast and slow tracks in lysozyme folding: insight into the role of domains in the folding process. , 1997, Journal of molecular biology.

[37]  J. Onuchic,et al.  Fast-folding experiments and the topography of protein folding energy landscapes. , 1996, Chemistry & biology.

[38]  Christopher M. Dobson,et al.  A residue-specific NMR view of the non-cooperative unfolding of a molten globule , 1997, Nature Structural Biology.

[39]  H. Roder,et al.  Kinetic role of early intermediates in protein folding. , 1997, Current opinion in structural biology.

[40]  T. Creighton The energetic ups and downs of protein folding , 1994, Nature Structural Biology.

[41]  C. Dobson,et al.  Tertiary interactions in the folding pathway of hen lysozyme: kinetic studies using fluorescent probes. , 1994, Biochemistry.

[42]  H. Halvorson,et al.  Consideration of the Possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues. , 1975, Biochemistry.

[43]  H. Scheraga,et al.  Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme. , 1996, Biochemistry.

[44]  K. Kuwajima,et al.  The molten globule state as a clue for understanding the folding and cooperativity of globular‐protein structure , 1989, Proteins.

[45]  C. Dobson,et al.  Detection of transient protein folding populations by mass spectrometry. , 1993, Science.

[46]  R. L. Baldwin,et al.  Structure and stability of a second molten globule intermediate in the apomyoglobin folding pathway. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[47]  R. L. Baldwin,et al.  On-pathway versus off-pathway folding intermediates. , 1996, Folding & design.

[48]  T. Sosnick,et al.  The barriers in protein folding , 1994, Nature Structural Biology.