Complexity of synthetic routes: Linear, convergent and reflexive syntheses

Complexity and diversity indices can be used to evaluate the structural changes that take place during the course of a synthesis. From the generalized ‘complexity versus step’ plot and the definition of the ‘ideal synthesis’ we derive the concept of excess complexity and the heuristic, minimization of excess complexity. Molecular complexity and synthetic complexity are differentiated by identifying them with intrinsic and extrinsic complexity, respectively, and the effect of chirality on each is clarified. The role of symmetry in synthetic analysis is delineated by considering symmetry in molecules, their molecular graphs and the synthesis digraphs for their preparation, which leads to the concept of reflexivity and the heuristic, maximization of reflexivity. Vulnerability and robustness are introduced in connection with linear and convergent syntheses, which are also considered in relation to reflexivity.

[1]  K. Nicolaou,et al.  Total synthesis of the oligosaccharide fragment of calicheamicin .gamma.1I , 1990 .

[2]  P. Lansbury,et al.  A practical, convergent method for glycopeptide synthesis , 1993 .

[3]  A. Gupta,et al.  General approach for the synthesis of polyquinenes via the Weiss reaction , 1991 .

[4]  K. Vollhardt,et al.  Cobalt‐Mediated [2 + 2 + 2]‐Cycloadditions: A Maturing Synthetic Strategy [New Synthetic Methods (43)] , 1984 .

[5]  R. DeVita,et al.  Enantioselective total synthesis of neooxazolomycin , 1990 .

[6]  G. Trivedi,et al.  Silver(I) Oxide Catalyzed Oxidation of o-Allyl- and o-(1-Propenyl)phenols , 1992 .

[7]  G. A. Petersson,et al.  General methods of synthetic analysis. Strategic bond disconnections for bridged polycyclic structures , 1975 .

[8]  Steven H. Bertz,et al.  On the complexity of graphs and molecules , 1983 .

[9]  M. J. Bishop,et al.  Total synthesis of kuanoniamines and dercitins , 1992 .

[10]  Kay M. Brummond,et al.  Recent Advances in the Pauson–Khand Reaction and Related [2+2+1] Cycloadditions , 2000 .

[11]  Bongjin Moon,et al.  Total Synthesis of (−)-Cylindrocyclophane A via a Double Horner-Emmons Macrocyclic Dimerization Event , 2000 .

[12]  P. Pauson The khand reaction : A convenient and general route to a wide range of cyclopentenone derivatives , 1985 .

[13]  K. Ośmiałowski,et al.  Solubility-structure relationship in naphthalene-organic solvent binary systems , 1991 .

[14]  James B. Hendrickson,et al.  Systematic synthesis design. 6. Yield analysis and convergency , 1977 .

[15]  A. Eschenmoser,et al.  Natural product synthesis and vitamin B12. , 1977, Science.

[16]  S. Sakai,et al.  Theoretical Studies of the Electrocyclic Reaction Mechanisms of Hexatriene to Cyclohexadiene , 1999 .

[17]  Steven H. Bertz,et al.  Branching in graphs and molecules , 1988, Discret. Appl. Math..

[18]  S. Danishefsky,et al.  Total Synthesis of Gypsetin , 1995 .

[19]  K. Miyashita,et al.  Asymmetric α-Alkylation of α-Amino Esters Using Pyridoxal Derivatives Having a Chiral Ansa-Structure and a Chiral Ionophore Function: a Novel Example of Double Asymmetric Induction , 2000 .

[20]  J. Petersen,et al.  Double Asymmetric Synthesis and a New Strategy for Stereochemical Control in Organic Synthesis , 1985 .

[21]  S. Bertz The conversion of bicyclo[3.3.0]octane-3,7-dione to bicyclo[3.3.0]oct-1-ene-3,7-dione. Symmetry as a complicating factor in synthetic analysis.☆ , 1983 .

[22]  R. Woodward Recent advances in the chemistry of natural products , 1968, Pure and applied chemistry. Chimie pure et appliquee.

[23]  S. Hecht,et al.  AN ALTERNATIVE SYNTHETIC APPROACH TOWARD DENDRITIC MACROMOLECULES : NOVEL BENZENE-CORE DENDRIMERS VIA ALKYNE CYCLOTRIMERIZATION , 1999 .

[24]  Peter Wipf,et al.  Total synthesis of westiellamide , 1992 .

[25]  P. Wender,et al.  The first metal-catalyzed intramolecular [5+2] cycloadditions of vinylcyclopropanes and alkenes: Scope, stereochemistry, and asymmetric catalysis , 1998 .

[26]  K. Sharpless,et al.  Searching for new reactivity (Nobel lecture). , 2002, Angewandte Chemie.

[27]  Ryoji Noyori,et al.  Asymmetric catalysis: science and opportunities (Nobel lecture). , 2002, Angewandte Chemie.

[28]  Barry M. Trost,et al.  Atom Economy—A Challenge for Organic Synthesis: Homogeneous Catalysis Leads the Way , 1995 .

[29]  B. M. T. and,et al.  On the Diastereoselectivity of Intramolecular Pd-Catalyzed TMM Cycloadditions. An Asymmetric Synthesis of the Perhydroazulene (−)-Isoclavukerin A , 1996 .

[30]  B. Trost,et al.  The atom economy--a search for synthetic efficiency. , 1991, Science.

[31]  M. Sawamura,et al.  CATALYTIC ASYMMETRIC SYNTHESIS BY MEANS OF SECONDARY INTERACTION BETWEEN CHIRAL LIGANDS AND SUBSTRATES , 1992 .

[32]  R. Barone,et al.  Information theory description of synthetic strategies. A new similarity index , 2003 .

[33]  H. W. Whitlock,et al.  On the Structure of Total Synthesis of Complex Natural Products , 1998 .

[34]  H. Hope,et al.  Reaction of dicobalt octacarbonyl with acetylene and carbon monoxide at low temperature and pressure: Formation of cyclic enone products , 1984 .

[35]  S. Hitchcock,et al.  A Convergent Total Synthesis of Calicheamicin γ , 1994 .

[36]  W. Büchele,et al.  Catalyst research — One of the cornerstones of modern chemical production , 1996 .

[37]  K. Halverson,et al.  A Convergent Synthesis of the Amyloid Protein of Alzheimer′s Disease. , 1992 .

[38]  E. Munson,et al.  Structure, dynamics, and reactivity of an alkoxy intermediate formed from acetylene on zeolite catalysts: an in situ solid-state NMR study , 1990 .

[39]  Masaaki Suzuki,et al.  Prostaglandin Syntheses by Three‐Component Coupling. New Synthetic Methods (49) , 1984 .

[40]  Pradeep Kumar,et al.  Double stereodifferentiation in asymmetric dihydroxylation: application to the first diastereoselective synthesis of l-xylo-[2R,3S,4S]-C18-phytosphingosine , 2000 .

[41]  R. B. Merrifield Solid Phase Synthesis (Nobel Lecture) , 1985 .

[42]  J. Springer,et al.  Total synthesis of carpanone , 1971 .

[43]  G. Vidari,et al.  Quassinoids: total synthesis of dl-quassin , 1984 .

[44]  Philip L. Fuchs,et al.  Increase in intricacy—a tool for evaluating organic syntheses , 2001 .

[45]  Davidr . Evans,et al.  Application of Complex Aldol Reactions to the Total Synthesis of Phorboxazole B , 2000 .

[46]  R. Borzilleri,et al.  Total Synthesis of the Unusual Marine Alkaloid (-)-Papuamine Utilizing a Novel Imino Ene Reaction , 1995 .

[47]  S. Schreiber,et al.  Target-oriented and diversity-oriented organic synthesis in drug discovery. , 2000, Science.

[48]  P. Spanu,et al.  Stereoselective Approaches to Bioactive Carbohydrates and Alkaloids-With a Focus on Recent Syntheses Drawing from the Chiral Pool , 1995 .

[49]  J. Whitesell Cyclohexyl-based chiral auxiliaries , 1992 .

[50]  D. Seebach,et al.  Organic Synthesis—Where now? , 1990 .

[51]  Michel J. Bertrand,et al.  General index of molecular complexity and chromatographic retention data , 1986 .

[52]  R. S. Coleman,et al.  SYNTHESIS OF HELICALLY CHIRAL MOLECULES : STEREOSELECTIVE TOTAL SYNTHESIS OF THE PERYLENEQUINONES PHLEICHROME AND CALPHOSTIN A , 1995 .

[53]  Craig W. Lindsley,et al.  Solid-Phase Biomimetic Synthesis of Carpanone-like Molecules , 2000 .

[54]  Steven H. Bertz,et al.  Convergence, molecular complexity, and synthetic analysis , 1982 .

[55]  White,et al.  Bidirectional asymmetric allylboration. A convenient asymmetric synthesis of C(2)-symmetric 3-methylenepentane-1,5-diols and rapid access to C(2)-symmetric spiroketals , 2000, The Journal of organic chemistry.

[56]  H. Mihara,et al.  Peptide and protein synthesis by segment synthesis-condensation. , 1989, Science.

[57]  F. West,et al.  Intramolecular [4 + 3]-cycloadditions of photochemically generated oxyallyl zwitterions: a route to functionalized cyclooctanoid skeletons , 1993 .

[58]  M. Tius,et al.  Convergent synthesis of vineomycinone B2 methyl ester , 1990 .

[59]  R. Woodward,et al.  The total synthesis of vitamin B12 , 1973, Pure and applied chemistry. Chimie pure et appliquee.

[60]  D. A. Singleton,et al.  Versatile [3 + 2] methylenecyclopentane annulations of unactivated and electron-rich olefins with [(trimethylsilyl)methylene]cyclopropanedicarboxylates , 1994 .

[61]  D. Mullen,et al.  Solid-phase peptide synthesis: a silver anniversary report. , 2009, International journal of peptide and protein research.

[62]  J. Mallamo,et al.  Tandem michael-michael-ring closure (mimirc) reactions: One-pot steroid total synthesis-(±)-9,11-dehydroestrones , 1981 .

[63]  K. Dötz Carbene Complexes in Organic Synthesis [New Synthetic Methods (47)] , 1984 .

[64]  James D. Meadows,et al.  ENANTIODIVERGENT SYNTHESES OF (+)‐ AND (‐)‐NONACTIC ACID AND THE TOTAL SYNTHESIS OF NONACTIN , 1984 .

[65]  S. Danishefsky,et al.  From Glycals to Glycopeptides: A Convergent and Stereoselective Total Synthesis of a High Mannose N‐Linked Glycopeptide , 2001 .

[66]  J. Porco,et al.  Total Synthesis of (±)-Torreyanic Acid , 2000 .

[67]  D. Boger,et al.  Total synthesis of (+)-duocarmycin SA , 1992 .

[68]  J. Clark Catalysis for green chemistry , 2001 .

[69]  P. Lansbury,et al.  A convergent approach to the chemical synthesis of asparagine-linked glycopeptides , 1990 .

[70]  Steven H. Bertz,et al.  The first general index of molecular complexity , 1981 .

[71]  Q. Jiang,et al.  Total synthesis of (+)-quassin. , 2000, Journal of Organic Chemistry.

[72]  D. J. Milner Selective manipulation of only one of two similar sites within a molecule ‘odin reactions’: Strategic advantage for synthesis and tactics available , 1995 .

[73]  B. Trost Transition metal templates as guides for cycloadditions , 1988 .

[74]  T. Ando,et al.  Sex pheromone candidates with a conjugated triene system: Synthesis and chemical characterization , 2004, Journal of Chemical Ecology.

[75]  K. Nicolaou,et al.  Total synthesis of calicheamicin .gamma.1I , 1992 .

[76]  Steve Wenglowsky,et al.  Three-Component Intramolecular Two-Alkyne Annulations of Fischer Carbene Complexes: New Strategies for Steroid Synthesis , 1994 .

[77]  R. L. Halterman Synthesis and Applications of Chiral Cyclopentadienylmetal Complexes , 1992 .

[78]  F. Vögtle,et al.  Iterative Synthesis in Organic Chemistry , 1999 .

[79]  Transition Metal-Catalyzed [5+2] Cycloadditions with Substituted Cyclopropanes: First Studies of Regio- and Stereoselectivity , 1999 .

[80]  Craig J. Forsyth,et al.  Total synthesis of halichondrin B and norhalichondrin B , 1992 .

[81]  T. Madey,et al.  REACTION PATHWAYS OF ACETYLENE ON PD/W(211) : A TPD AND HREELS INVESTIGATION , 1998 .

[82]  S. Kozmin,et al.  Total Synthesis of (−)-Cylindrocyclophane F , 1999 .

[83]  The chiral pool as a source of enantioselective catalysts and auxiliaries , 1992 .

[84]  A. Barrett,et al.  Total Synthesis of (+)-Papuamine: An Antifungal Pentacyclic Alkaloid from a Marine Sponge, Haliclona sp. , 1996, The Journal of organic chemistry.

[85]  James D White,et al.  Total synthesis of (+)-aplasmomycin , 1986 .

[86]  James B. Hendrickson Approaching the logic of synthesis design , 1986 .

[87]  K. Liu,et al.  Studies Related to the Carbohydrate Sectors of Esperamicin and Calicheamicin: Definition of the Stability Limits of the Esperamicin Domain and Fashioning of a Glycosyl Donor from the Calicheamicin Domain , 1995 .

[88]  B. Zwanenburg,et al.  The concept of transient chirality in the stereoselective synthesis of functionalized cycloalkenes applying the retro-diels-alder methodology. , 1999, Chemical reviews.

[89]  MULTISTEP CONVERGENT SOLUTION-PHASE COMBINATORIAL SYNTHESIS AND DELETION SYNTHESIS DECONVOLUTION , 1998 .

[90]  D. Boger,et al.  (-)-Sandramycin : total synthesis and preliminary DNA binding properties , 1993 .

[91]  R. Bloch,et al.  Enantioselective synthesis of lyxo -(2 R ,3 R ,4 R )-C 18 -phytosphingosine using double stereodifferentiation 1 , 2000 .

[92]  R. Xie,et al.  Total Synthesis of Taspine , 1998 .

[93]  M. Matthews Green electrochemistry. Examples and challenges , 2001 .

[94]  Ping Huang,et al.  Multiple constructions in synthesis design , 1989, J. Chem. Inf. Comput. Sci..

[95]  Roman. Davis,et al.  A convergent total synthesis of (.+-.)-prostaglandin F2.alpha. via conjugate addition and regiospecific enolate trapping , 1979 .

[96]  Trevor L. Dzwiniel,et al.  Cobalt-Mediated Intermolecular Allyl/Alkyne [3 + 2 + 2] Cycloaddition Reactions. A Practical Metal Template for Convergent Synthesis of Functionalized Seven-Membered Rings , 1998 .

[97]  J. Stryker,et al.  Transition Metal-Mediated [3 + 2 + 2] Allyl/Alkyne Cycloaddition Reactions. A New Reactivity Pattern for the Synthesis of Seven-Membered Carbocycles , 1995 .

[98]  Steven Magnuson Two-directional synthesis and its use in natural product synthesis , 1995 .

[99]  A. Mortlock,et al.  Total Syntheses of (-)-Papuamine and (-)-Haliclonadiamine. , 1996, The Journal of organic chemistry.

[100]  René Barone,et al.  A New and Simple Approach to Chemical Complexity. Application to the Synthesis of Natural Products , 2001, J. Chem. Inf. Comput. Sci..

[101]  S. Kozmin,et al.  Total Synthesis of (−)-Cylindrocyclophanes A and F Exploiting the Reversible Nature of the Olefin Cross Metathesis Reaction , 2001 .

[102]  Michael G. Yang,et al.  DOUBLE STEREODIFFERENTIATING LEWIS ACID-PROMOTED (MUKAIYAMA) ALDOL BOND CONSTRUCTIONS , 1995 .

[103]  B. Gray,et al.  Total synthesis of boromycin , 1989 .

[104]  A. Moyano,et al.  Synthesis of Triquinacene Derivatives. New Approach Towards the Synthesis of Dodecahedrane. , 1986 .

[105]  F. A. Davis,et al.  Asymmetric hydroxylation of enolates with N-sulfonyloxaziridines , 1992 .

[106]  J. Y. Roberge,et al.  A strategy for a convergent synthesis of N-linked glycopeptides on a solid support. , 1995, Science.

[107]  E. Munson,et al.  Carbon-13 NMR study of acetylene cyclotrimerization on platinum/alumina catalysts , 1992 .

[108]  E. Kaiser Synthetic Approaches to Biologically Active Peptides and Proteins Including Enzymes , 1989 .

[109]  D. Boger,et al.  d,l- and meso-Isochrysohermidin: total synthesis and interstrand DNA crosslinking , 1993 .