The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II.

[1]  P. Cramer,et al.  Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. , 2004, Molecular cell.

[2]  F. Asturias.  Another piece in the transcription initiation puzzle , 2004, Nature Structural &Molecular Biology.

[3]  S. Hahn,et al.  Mapping the Location of TFIIB within the RNA Polymerase II Transcription Preinitiation Complex A Model for the Structure of the PIC , 2004, Cell.

[4]  Steven Hahn,et al.  Structure and mechanism of the RNA polymerase II transcription machinery , 2004, Nature Structural &Molecular Biology.

[5]  R. Ebright,et al.  Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[6]  D. Bushnell,et al.  Structural Basis of Transcription: Separation of RNA from DNA by RNA Polymerase II , 2004, Science.

[7]  Roger D Kornberg,et al.  Structural Basis of Transcription: An RNA Polymerase II-TFIIB Cocrystal at 4.5 Angstroms , 2004, Science.

[8]  B. Coulombe,et al.  Photo-Cross-Linking of a Purified Preinitiation Complex Reveals Central Roles for the RNA Polymerase II Mobile Clamp and TFIIE in Initiation Mechanisms , 2004, Molecular and Cellular Biology.

[9]  J. T. Kadonaga,et al.  The RNA polymerase II core promoter. , 2003, Annual review of biochemistry.

[10]  R. Kornberg,et al.  RNA polymerase II/TFIIF structure and conserved organization of the initiation complex. , 2003, Molecular cell.

[11]  P. Cramer,et al.  Architecture of initiation-competent 12-subunit RNA polymerase II , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[12]  Roger D Kornberg,et al.  Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Mahadeb Pal,et al.  The initiation–elongation transition: Lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23 , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[14]  A. Dvir,et al.  Promoter escape by RNA polymerase II. , 2002, Biochimica et biophysica acta.

[15]  S. Yokoyama,et al.  Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution , 2002, Nature.

[16]  K. Murakami,et al.  Structural Basis of Transcription Initiation: RNA Polymerase Holoenzyme at 4 Å Resolution , 2002, Science.

[17]  D. Luse,et al.  Strong Natural Pausing by RNA Polymerase II within 10 Bases of Transcription Start May Result in Repeated Slippage and Reextension of the Nascent RNA , 2002, Molecular and Cellular Biology.

[18]  L. Brieba,et al.  T7 promoter release mediated by DNA scrunching , 2001, The EMBO journal.

[19]  D. Luse,et al.  Promoter Clearance by RNA Polymerase II Is an Extended, Multistep Process Strongly Affected by Sequence , 2001, Molecular and Cellular Biology.

[20]  S. Brodie,et al.  Promoter-Specific Shifts in Transcription Initiation Conferred by Yeast TFIIB Mutations Are Determined by the Sequence in the Immediate Vicinity of the Start Sites , 2001, Molecular and Cellular Biology.

[21]  R. Conaway,et al.  TFIIH action in transcription initiation and promoter escape requires distinct regions of downstream promoter DNA , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[22]  P. Cramer,et al.  Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution , 2001, Science.

[23]  R. Conaway,et al.  Mechanism of transcription initiation and promoter escape by RNA polymerase II. , 2001, Current opinion in genetics & development.

[24]  D. Reinberg,et al.  Defective Interplay of Activators and Repressors with TFIIH in Xeroderma Pigmentosum , 2001, Cell.

[25]  B. Coulombe,et al.  Mechanism of Promoter Melting by the Xeroderma Pigmentosum Complementation Group B Helicase of Transcription Factor IIH Revealed by Protein-DNA Photo-Cross-Linking , 2000, Molecular and Cellular Biology.

[26]  S. Buratowski.  Snapshots of RNA polymerase II transcription initiation. , 2000, Current opinion in cell biology.

[27]  D. Reinberg,et al.  Mechanism of ATP-dependent promoter melting by transcription factor IIH. , 2000, Science.

[28]  M. Kashlev,et al.  The 8-Nucleotide-long RNA:DNA Hybrid Is a Primary Stability Determinant of the RNA Polymerase II Elongation Complex* , 2000, The Journal of Biological Chemistry.

[29]  Ming Yan,et al.  The Use of ATP and Initiating Nucleotides during Postrecruitment Steps at the Activated Adenovirus E4 Promoter* , 1999, The Journal of Biological Chemistry.

[30]  J. Folster,et al.  An Interaction between the N-terminal Region and the Core Domain of Yeast TFIIB Promotes the Formation of TATA-binding Protein-TFIIB-DNA Complexes* , 1999, The Journal of Biological Chemistry.

[31]  R. G. Keene,et al.  Initially Transcribed Sequences Strongly Affect the Extent of Abortive Initiation by RNA Polymerase II* , 1999, The Journal of Biological Chemistry.

[32]  D. Reinberg,et al.  Promoter-proximal stalling results from the inability to recruit transcription factor IIH to the transcription complex and is a regulated event. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[33]  Shwu‐Yuan Wu,et al.  Properties of PC4 and an RNA Polymerase II Complex in Directing Activated and Basal Transcription in Vitro * , 1998, The Journal of Biological Chemistry.

[34]  F. Holstege,et al.  Three transitions in the RNA polymerase II transcription complex during initiation , 1997, The EMBO journal.

[35]  Ming Yan,et al.  Multiple ATP‐dependent steps in RNA polymerase II promoter melting and initiation , 1997, The EMBO journal.

[36]  R. Conaway,et al.  A role for TFIIH in controlling the activity of early RNA polymerase II elongation complexes. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[37]  R. Conaway,et al.  A Role for ATP and TFIIH in Activation of the RNA Polymerase II Preinitiation Complex Prior to Transcription Initiation (*) , 1996, The Journal of Biological Chemistry.

[38]  D. Reinberg,et al.  Purification of human RNA polymerase II and general transcription factors. , 1996, Methods in enzymology.

[39]  R. Roeder,et al.  Cloning of an intrinsic human TFIID subunit that interacts with multiple transcriptional activators , 1995, Science.

[40]  J. Greenblatt,et al.  Initiation of transcription by RNA polymerase II is limited by melting of the promoter DNA in the region immediately upstream of the initiation site. , 1994, The Journal of biological chemistry.

[41]  Wei-Hua Wu,et al.  Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. , 1994, The Journal of biological chemistry.

[42]  D. Tantin,et al.  A heteroduplex template circumvents the energetic requirement for ATP during activated transcription by RNA polymerase II. , 1994, The Journal of biological chemistry.

[43]  J. Lis,et al.  DNA melting on yeast RNA polymerase II promoters. , 1993, Science.

[44]  C. F. Kostrub,et al.  Production of human RAP30 and RAP74 in bacterial cells. , 1993, Protein expression and purification.