Method for Assessment of Viability and Morphological Changes of Bacteria in the Early Stage of Colony Formation on a Simulated Natural Environment

ABSTRACT A quantitative analysis of changes in the physiological status of bacterial cells is a fundamental type of study in microbiological research. We devised a method for measuring the viability of bacteria in the early stage of colony formation on a simulated natural environment. In this method, a solid medium containing soil extract was used, and the formation of bacterial microcolonies on a membrane filter was determined by use of a laser scanning cytometer combined with live-dead fluorescent dyes. A polychlorinated biphenyl degrader, Comamonas testosteroni TK102, was used in this study. Surprisingly, approximately 20% of the microcolonies had their growth stopped and eventually died. In the presence of biphenyl, the growth arrest was increased to 50%, and filamentous cells were observed in the colonies. Predicted intermediate metabolites of biphenyl were added to the medium to determine the relationship between the change of viability and the production of metabolites, and the addition of 2,3-dihydroxybiphenyl showed low viability. The arrest was not observed to occur on nutrient-rich medium, suggesting that the change in viability might occur in a nutrient-poor natural condition. The results of this study demonstrated that toxic metabolites of xenobiotics might change cell viability in the natural environment.

[1]  L. Kamentsky,et al.  Microscope-based multiparameter laser scanning cytometer yielding data comparable to flow cytometry data. , 1991, Cytometry.

[2]  Xinxin Ding,et al.  Characterization and quantitative analysis of DNA adducts formed from lower chlorinated PCB-derived quinones. , 2004, Chemical Research in Toxicology.

[3]  M R Barer,et al.  Bacterial viability and culturability. , 1999, Advances in microbial physiology.

[4]  S. Gambhir,et al.  Quantum Dots for Live Cells, in Vivo Imaging, and Diagnostics , 2005, Science.

[5]  J. Guillet,et al.  Solid phase cytometry for detection of rare events. , 1997, Cytometry.

[6]  F J Mondello,et al.  In situ stimulation of aerobic PCB biodegradation in Hudson River sediments. , 1993, Science.

[7]  A. Spormann,et al.  Dynamics and Control of Biofilms of the Oligotrophic Bacterium Caulobacter crescentus , 2004, Journal of bacteriology.

[8]  Knut Rudi,et al.  Use of Ethidium Monoazide and PCR in Combination for Quantification of Viable and Dead Cells in Complex Samples , 2005, Applied and Environmental Microbiology.

[9]  Roger E. Bumgarner,et al.  Gene expression in Pseudomonas aeruginosa biofilms , 2001, Nature.

[10]  B. Poolman,et al.  Mechanisms of membrane toxicity of hydrocarbons. , 1995, Microbiological reviews.

[11]  Peter H. Janssen,et al.  Effects of Growth Medium, Inoculum Size, and Incubation Time on Culturability and Isolation of Soil Bacteria , 2005, Applied and Environmental Microbiology.

[12]  M. Fukuda,et al.  Construction of Broad Host Range Cloning Vectors for Gram-negative Bacteria , 1985 .

[13]  M. Hamilton,et al.  Comparison of Fluorescence Microscopy and Solid-Phase Cytometry Methods for Counting Bacteria in Water , 2004, Applied and Environmental Microbiology.

[14]  H. Heipieper,et al.  Mechanisms of resistance of whole cells to toxic organic solvents , 1994 .

[15]  A. Rodrigues,et al.  Novel Method Using a Laser Scanning Cytometer for Detection of Mycobacteria in Clinical Samples , 2004, Journal of Clinical Microbiology.

[16]  M. Whiteley,et al.  Pseudomonas aeruginosa attachment and biofilm development in dynamic environments , 2004, Molecular microbiology.

[17]  K. Kimbara,et al.  Genes for Mn(II)-dependent NahC and Fe(II)-dependent NahH located in close proximity in the thermophilic naphthalene and PCB degrader, Bacillus sp. JF8: cloning and characterization. , 2004, Microbiology.

[18]  W. Verstraete,et al.  Biphenyl and Benzoate Metabolism in a Genomic Context: Outlining Genome-Wide Metabolic Networks in Burkholderia xenovorans LB400 , 2004, Applied and Environmental Microbiology.

[19]  W. Martens-Habbena,et al.  An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. , 2005, Environmental microbiology.

[20]  R. Conrad,et al.  Detecting active methanogenic populations on rice roots using stable isotope probing. , 2005, Environmental microbiology.

[21]  G. O’Toole,et al.  Microbial Biofilms: from Ecology to Molecular Genetics , 2000, Microbiology and Molecular Biology Reviews.

[22]  S. Heim,et al.  The Viable but Nonculturable State and Starvation Are Different Stress Responses of Enterococcus faecalis, as Determined by Proteome Analysis , 2002, Journal of bacteriology.

[23]  A. L. Koch Microbial Physiology and Ecology of Slow Growth , 1997, Microbiology and Molecular Biology Reviews.

[24]  K. Kimbara,et al.  Flow Cytometry Analysis of Changes in the DNA Content of the Polychlorinated Biphenyl Degrader Comamonas testosteroni TK102: Effect of Metabolites on Cell-Cell Separation , 2002, Applied and Environmental Microbiology.

[25]  Byron F. Brehm-Stecher,et al.  Single-Cell Microbiology: Tools, Technologies, and Applications , 2004, Microbiology and Molecular Biology Reviews.

[26]  J. Baudart,et al.  Assessment of a new technique combining a viability test, whole-cell hybridization and laser-scanning cytometry for the direct counting of viable Enterobacteriaceae cells in drinking water. , 2005, FEMS microbiology letters.

[27]  Alfonso Valencia,et al.  The organization of the microbial biodegradation network from a systems‐biology perspective , 2003, EMBO reports.

[28]  K. Kimbara,et al.  Rapid Assessment of the Physiological Status of the Polychlorinated Biphenyl Degrader Comamonas testosteroni TK102 by Flow Cytometry , 2002, Applied and Environmental Microbiology.

[29]  J. Shapiro Thinking about bacterial populations as multicellular organisms. , 1998, Annual review of microbiology.

[30]  K. Lewis,et al.  Isolating "Uncultivable" Microorganisms in Pure Culture in a Simulated Natural Environment , 2002, Science.

[31]  M. Seeger,et al.  From PCBs to highly toxic metabolites by the biphenyl pathway. , 2004, Environmental microbiology.

[32]  Roberto Kolter,et al.  Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis , 1998, Molecular microbiology.

[33]  D. Bedard,et al.  Evidence for novel mechanisms of polychlorinated biphenyl metabolism in Alcaligenes eutrophus H850 , 1987, Applied and environmental microbiology.

[34]  K. Zengler,et al.  Cultivating the uncultured , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[35]  J. Bolin,et al.  Purification and Preliminary Characterization of a Serine Hydrolase Involved in the Microbial Degradation of Polychlorinated Biphenyls* , 1998, The Journal of Biological Chemistry.

[36]  K. Furukawa,et al.  Effect of chlorine substitution on the bacterial metabolism of various polychlorinated biphenyls , 1979, Applied and environmental microbiology.

[37]  D. Focht,et al.  Degradation of polychlorinated biphenyls by two species of Achromobacter. , 1973, Canadian journal of microbiology.

[38]  D. Pereg,et al.  DNA adduction by polychlorinated biphenyls: adducts derived from hepatic microsomal activation and from synthetic metabolites. , 2002, Chemico-biological interactions.

[39]  B. Lazazzera,et al.  Environmental signals and regulatory pathways that influence biofilm formation , 2004, Molecular microbiology.

[40]  A. Ohta,et al.  Expression of the bph genes involved in biphenyl/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. , 2000, Gene.