A new noncovalent force: comparison of P···N interaction with hydrogen and halogen bonds.

When PH(3) is paired with NH(3), the two molecules are oriented such that the P and N atoms face one another directly, without the intermediacy of a H atom. Quantum calculations indicate that this attraction is due in part to the transfer of electron density from the lone pair of the N atom to the σ(∗) antibond of a P-H covalent bond. Unlike a H-bond, the pertinent hydrogen is oriented about 180° away from, instead of toward, the N, and the N lone pair overlaps with the lobe of the P-H σ(∗) orbital that is closest to the P. In contrast to halogen bonds, there is no requirement of a σ-hole of positive electrostatic potential on the P atom, nor is it necessary for the two interacting atoms to be of differing potential. In fact, the two atoms can be identical, as the global minimum of the PH(3) homodimer has the same structure, characterized by a P···P attraction. Natural bond orbital analysis, energy decomposition, and visualization of total electron density shifts reveal other similarities and differences between the three sorts of molecular interaction.

[1]  P. Schuster,et al.  The Hydrogen bond : recent developments in theory and experiments , 1976 .

[2]  Yue Zhang,et al.  Computational study on the mechanism for the gas‐phase reaction of dimethyl disulfide with OH , 2011 .

[3]  Osamu Takahashi,et al.  Relevance of weak hydrogen bonds in the conformation of organic compounds and bioconjugates: evidence from recent experimental data and high-level ab initio MO calculations. , 2010, Chemical reviews.

[4]  Anthony C. Legon,et al.  HFI and DFT study of the bonding in complexes of halogen and interhalogen diatomics with Lewis base , 2006 .

[5]  T. H. Dunning Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen , 1989 .

[6]  Frank H. Allen,et al.  The Nature and Geometry of Intermolecular Interactions between Halogens and Oxygen or Nitrogen , 1996 .

[7]  S. J. Grabowski,et al.  Hydrogen Bonding—New Insights , 2006 .

[8]  G. Desiraju A bond by any other name. , 2011, Angewandte Chemie.

[9]  R. Zahradník,et al.  Weak intermolecular interactions in chemistry and biology , 1980 .

[10]  Mark S. Gordon,et al.  General atomic and molecular electronic structure system , 1993, J. Comput. Chem..

[11]  S. Scheiner,et al.  Intermolecular H...H Bonding and Proton Transfer in Semisandwich Re and Ru Complexes , 1998 .

[12]  P. Metrangolo,et al.  Halogen bonding and pi...pi stacking control reactivity in the solid state. , 2004, Journal of the American Chemical Society.

[13]  M. Kaupp,et al.  13C NMR study of halogen bonding of haloarenes: measurements of solvent effects and theoretical analysis. , 2004, Journal of the American Chemical Society.

[14]  Eric Westhof,et al.  Halogen bonds in biological molecules. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[15]  L. Curtiss,et al.  Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint , 1988 .

[16]  M. Suhm,et al.  The complexes of halothane with benzene: the temperature dependent direction of the complexation shift of the aliphatic C-H stretching. , 2010, Physical chemistry chemical physics : PCCP.

[17]  B. G. Oliveira,et al.  Dihydrogen bonds and blue-shifting hydrogen bonds: A theoretical study of AH···HCF3 and TH2···HCF3 model systems with A = Li or Na and T = Be or Mg , 2010 .

[18]  Steve Scheiner,et al.  Hydrogen Bonding: A Theoretical Perspective , 1997 .

[19]  J. Elguero,et al.  An ab initio investigation of the properties of H2:HX hydrogen-bonded complexes , 2010 .

[20]  L. Falvello The hydrogen bond, front and center. , 2010, Angewandte Chemie.

[21]  S. Scheiner,et al.  Evaluation of the H-Bonding Properties of CH...O Interactions Based upon NMR Spectra , 2000 .

[22]  W. Herrebout,et al.  A cryospectroscopic study of the blue-shifting C–H⋯O bonded complexes of pentafluoroethane with dimethyl ether-d6, acetone-d6 and oxirane-d4 , 2010 .

[23]  J. Rebek,et al.  Nitrogen−Halogen Intermolecular Forces in Solution , 1999 .

[24]  Frank Weinhold,et al.  Natural bond orbital analysis of molecular interactions: Theoretical studies of binary complexes of , 1986 .

[25]  S. F. Boys,et al.  The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .

[26]  S. Scheiner,et al.  Hydrogen bonding and proton transfers involving triply bonded atoms. Acetylene and hydrocyanic acid , 1987 .

[27]  F. Diederich,et al.  Orthogonal dipolar interactions between amide carbonyl groups , 2008, Proceedings of the National Academy of Sciences.

[28]  P Hobza,et al.  Noncovalent interactions: a challenge for experiment and theory. , 2000, Chemical reviews.

[29]  J. D. Bene An ab initio molecular orbital study of the structures and energies of neutral and charged bimolecular complexes of NH3 with the hydrides AHn (A = N, O, F, P, S, and Cl) , 1989 .

[30]  Anthony J. Stone,et al.  The Theory of Intermolecular Forces , 2013 .

[31]  Peter Politzer,et al.  Chemical Applications of Atomic and Molecular Electrostatic Potentials: "Reactivity, Structure, Scattering, And Energetics Of Organic, Inorganic, And Biological Systems" , 2013 .

[32]  J. Dunitz,et al.  Directional preferences of nonbonded atomic contacts with divalent sulfur. 1. Electrophiles and nucleophiles , 1977 .

[33]  Yong-Jun Jiang,et al.  Ab initio study of the complexes of halogen-containing molecules RX (X=Cl, Br, and I) and NH3: towards understanding the nature of halogen bonding and the electron-accepting propensities of covalently bonded halogen atoms. , 2005, Chemistry.

[34]  Peter Politzer,et al.  Directional tendencies of halogen and hydrogen bonds , 2010 .

[35]  P. Hobza,et al.  Non-Covalent Interactions , 2009 .

[36]  G. Desiraju,et al.  Halogen⋯O(Nitro) Supramolecular Synthon in Crystal Engineering: A Combined Crystallographic Database and Ab Initio Molecular Orbital Study , 1997 .

[37]  Steve Scheiner,et al.  Comparison of Morokuma and perturbation theory approaches to decomposition of interaction energy. (NH4)+…NH3 , 1990 .

[38]  Peter Politzer,et al.  A predicted new type of directional noncovalent interaction , 2007 .

[39]  A. van der Avoird,et al.  Symmetry‐adapted perturbation theory of nonadditive three‐body interactions in van der Waals molecules. I. General theory , 1995 .

[40]  Kazuo Kitaura,et al.  A new energy decomposition scheme for molecular interactions within the Hartree‐Fock approximation , 1976 .

[41]  P. Hobza,et al.  Quantum chemical and statistical thermodynamic investigations of anesthetic activity. 3. The interaction between CH4, CH3Cl, CH2Cl2, CHCl3, CCl4, and an O—H … O hydrogen bond , 1984 .

[42]  G. Schulte,et al.  Lactones. 1. X-ray crystallographic studies of nonanolactone and tridecanolactone: nature of CH.cntdot..cntdot..cntdot.O nonbonded interactions , 1991 .

[43]  Pierangelo Metrangolo,et al.  Halogen bonding based recognition processes: a world parallel to hydrogen bonding. , 2005, Accounts of chemical research.

[44]  Peter Politzer,et al.  Halogen bonding and the design of new materials: organic bromides, chlorides and perhaps even fluorides as donors , 2007, Journal of molecular modeling.

[45]  V. Bakhmutov Dihydrogen bonds : principles, experiments, and applications , 2008 .

[46]  Peter Politzer,et al.  An overview of halogen bonding , 2007, Journal of molecular modeling.

[47]  F. Temple Burling,et al.  Computational studies of nonbonded sulfur-oxygen and selenium-oxygen interactions in the thiazole and selenazole nucleosides , 1992 .

[48]  J. Bergès,et al.  Dispersion-driven hydrogen bonding: predicted hydrogen bond between water and platinum(II) identified by neutron diffraction. , 2010, Angewandte Chemie.

[49]  Pavel Hobza,et al.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone. , 2009, Journal of chemical theory and computation.

[50]  Shuji Tomoda,et al.  Statistical and theoretical investigations on the directionality of nonbonded S...O interactions. Implications for molecular design and protein engineering. , 2002, Journal of the American Chemical Society.

[51]  P. Vaz,et al.  Hydrogen-bond dynamics of C-H...O interactions: the chloroform...acetone case. , 2010, Chemistry.

[52]  Kazuo Kitaura,et al.  Energy Decomposition Analysis of Molecular Interactions , 1981 .

[53]  G. Desiraju,et al.  Defining the hydrogen bond: an account , 2011 .

[54]  Marcin Palusiak,et al.  On the nature of halogen bond – The Kohn–Sham molecular orbital approach , 2010 .

[55]  D. Michalska,et al.  Theoretical investigation of the conformation, acidity, basicity and hydrogen bonding ability of halogenated ethers. , 2010, Physical chemistry chemical physics : PCCP.

[56]  Alfred Karpfen,et al.  Charge-Transfer Complexes between NH3 and the Halogens F2, ClF, and Cl2: An ab Initio Study on the Intermolecular Interaction , 2000 .

[57]  S. Scheiner Molecular Interactions. From van der Waals to Strongly Bound Complexes , 1997 .

[58]  G. Gilli,et al.  The Nature of the Hydrogen Bond , 2009 .

[59]  V. Tsirelson,et al.  Hydrogen bonds and O⋯O interactions in proton-ordered ices. DFT computations with periodic boundary conditions , 2010 .

[60]  G. Schaftenaar,et al.  Molden: a pre- and post-processing program for molecular and electronic structures* , 2000, J. Comput. Aided Mol. Des..

[61]  Gautam R. Desiraju,et al.  The Weak Hydrogen Bond: In Structural Chemistry and Biology , 1999 .

[62]  Roger Hayward,et al.  The Hydrogen Bond , 1960 .

[63]  Eugene S. Kryachko,et al.  Theory of molecular interactions , 1986 .

[64]  K. Janda,et al.  On the unusual properties of halogen bonds: a detailed ab initio study of X2-(H2O)(1-5) clusters (X = Cl and Br). , 2009, The journal of physical chemistry. A.

[65]  Anthony C. Legon,et al.  Prereactive Complexes of Dihalogens XY with Lewis Bases B in the Gas Phase: A Systematic Case for the Halogen Analogue B⋅⋅⋅XY of the Hydrogen Bond B⋅⋅⋅HX , 1999 .

[66]  M. Frisch,et al.  Molecular orbital study of the dimers (AHn)2 formed from ammonia, water, hydrogen fluoride, phosphine, hydrogen sulfide, and hydrogen chloride , 1985 .

[67]  Steve Scheiner,et al.  SH···N and SH···P blue-shifting H-bonds and N···P interactions in complexes pairing HSN with amines and phosphines. , 2011, The Journal of chemical physics.

[68]  Professor Dr. George A. Jeffrey,et al.  Hydrogen Bonding in Biological Structures , 1991, Springer Berlin Heidelberg.

[69]  R. Raines,et al.  Nature of Amide Carbonyl−Carbonyl Interactions in Proteins , 2009, Journal of the American Chemical Society.

[70]  J. Dunitz,et al.  Observation of an Eclipsed C sp3‐CH3 Bond in a Tricyclic Orthoamide; Experimental and Theoretical Evidence for CH ⃛O Hydrogen Bonds , 1987 .

[71]  S. Scheiner,et al.  Basis sets for molecular interactions. 2. Application to H3NHF, H3NHOH, H2OHF, (NH3)2, and H3CHOH2 , 1987 .

[72]  Ibon Alkorta,et al.  Competition of hydrogen bonds and halogen bonds in complexes of hypohalous acids with nitrogenated bases. , 2008, The journal of physical chemistry. A.