Structure of lysozyme dissolved in neat organic solvents as assessed by NMR and CD spectroscopies.

The structure of the model protein hen egg-white lysozyme dissolved in water and in five neat organic solvents (ethylene glycol, methanol, dimethylsulfoxide (DMSO), formamide, and dimethylformamide (DMF)) has been examined by means of 1H NMR and circular dichroism (CD) spectroscopies. The NMR spectra of lysozyme reveal the lack of a defined tertiary structure in all five organic solvents, although the examination of line widths suggests the possibility of some ordered structure in ethylene glycol and in methanol. The near-UV CD spectra of the protein suggest no tertiary structure in lysozyme dissolved in DMSO, formamide, and DMF, while a distinctive (albeit less pronounced than in water) tertiary structure is seen in ethylene glycol and a drastically changed one in methanol. A highly developed secondary structure was observed by far-UV CD in ethylene glycol and methanol; interestingly, the alpha-helix content of the protein in both was greater than in water, while the beta-structure content was lower. (Solvent absorbance in the far-UV region prevents conclusions about the secondary structure in DMSO, formamide and DMF.)

[1]  A. Klibanov,et al.  Protein separation and purification in neat dimethyl sulfoxide. , 1991, Biochemical and biophysical research communications.

[2]  A. Klyosov,et al.  The reactions of alpha-chymotrypsin and related proteins with ester substrates in non-aqueous solvents. , 1975, European journal of biochemistry.

[3]  H. Mantsch,et al.  Beware of proteins in DMSO. , 1991, Biochimica et biophysica acta.

[4]  A. Klibanov,et al.  Structure, thermostability, and conformational flexibility of hen egg-white lysozyme dissolved in glycerol. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[5]  C. Dobson,et al.  Characterization of conformational preferences in a partly folded protein by heteronuclear NMR spectroscopy: assignment and secondary structure analysis of hen egg-white lysozyme in trifluoroethanol. , 1995, Biochemistry.

[6]  K. Kuwajima,et al.  Comparison of the transient folding intermediates in lysozyme and alpha-lactalbumin. , 1985, Biochemistry.

[7]  S. Venyaminov,et al.  Determination of Protein Secondary Structure , 1996 .

[8]  T. Creighton Proteins: Structures and molecular principles , 1983 .

[9]  W. D. Phillips,et al.  Nuclear magnetic resonance study of the mechanism of reversible denaturation of lysozyme. , 1971, Journal of the American Chemical Society.

[10]  W C Johnson,et al.  Protein secondary structure and circular dichroism: A practical guide , 1990, Proteins.

[11]  S. Singer The Properties of Proteins in Nonaqueous Solvents , 1963 .

[12]  G. Roberts,et al.  NMR of macromolecules : a practical approach , 1993 .

[13]  A. Doig,et al.  Binding energy of an amide-amide hydrogen bond in aqueous and nonpolar solvents , 1992 .

[14]  J. T. Yang,et al.  Circular dichroic analysis of protein conformation: inclusion of the beta-turns. , 1978, Analytical biochemistry.

[15]  N. C. Price,et al.  The application of circular dichroism to studies of protein folding and unfolding. , 1997, Biochimica et biophysica acta.

[16]  C. Dobson,et al.  A partially folded state of hen egg white lysozyme in trifluoroethanol: structural characterization and implications for protein folding. , 1993, Biochemistry.

[17]  R. C. Weast CRC Handbook of Chemistry and Physics , 1973 .

[18]  D. Kemp,et al.  Mechanism of Stabilization of Helical Conformations of Polypeptides by Water Containing Trifluoroethanol , 1996 .

[19]  A. Klibanov,et al.  Transport of proteins dissolved in organic solvents across biomimetic membranes. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[20]  O. Ptitsyn,et al.  Molten globule and protein folding. , 1995, Advances in protein chemistry.

[21]  A. Klibanov,et al.  Fourier-transform infrared spectroscopic investigation of protein stability in the lyophilized form. , 1995, Biochimica et biophysica acta.

[22]  A. Klibanov,et al.  Protein refolding in predominantly organic media markedly enhanced by common salts. , 1999, Biotechnology and bioengineering.

[23]  O. H. Lowry,et al.  Protein measurement with the Folin phenol reagent. , 1951, The Journal of biological chemistry.

[24]  A. Klibanov,et al.  Correct protein folding in glycerol. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[25]  K. Hamaguchi,et al.  STRUCTURE OF MURAMIDASE (LYSOZYME). I. THE EFFECT OF GUANIDINE HYDROCHLORIDE ON MURAMIDASE. , 1963, Journal of biochemistry.

[26]  C. Dobson,et al.  A photochemically induced dynamic nuclear polarization study of denatured states of lysozyme. , 1991, Biochemistry.

[27]  A. Klibanov,et al.  Lyophilization-induced reversible changes in the secondary structure of proteins. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[28]  C. Dobson,et al.  Hydrophobic clustering in nonnative states of a protein: Interpretation of chemical shifts in NMR spectra of denatured states of lysozyme , 1991, Proteins.

[29]  W. D. Phillips,et al.  Proton magnetic resonance spectra of proteins in random-coil configurations. , 1969, Journal of the American Chemical Society.

[30]  Oleg Jardetzky,et al.  NMR in molecular biology , 1981 .

[31]  A. Klibanov,et al.  Protein chromatography in neat organic solvents. , 1992, Biotechnology and bioengineering.

[32]  G. Alderton,et al.  Direct crystallization of lysozyme from egg white and some crystalline salts of lysozyme. , 1946, The Journal of biological chemistry.

[33]  K. P. Murphy,et al.  Energetics of hydrogen bonding in proteins: A model compound study , 1996, Protein science : a publication of the Protein Society.

[34]  N. Greenfield Methods to estimate the conformation of proteins and polypeptides from circular dichroism data. , 1996, Analytical biochemistry.

[35]  C. Dobson,et al.  Sequential 1H NMR assignments and secondary structure of hen egg white lysozyme in solution. , 1988, Biochemistry.

[36]  Alexander M. Klibanov,et al.  Enzymatic reactions in organic media , 1996 .

[37]  A. Klibanov,et al.  On protein solubility in organic solvent. , 1994, Biotechnology and bioengineering.

[38]  N. Sreerama,et al.  A self-consistent method for the analysis of protein secondary structure from circular dichroism. , 1993, Analytical biochemistry.

[39]  C. Dobson,et al.  1H nuclear magnetic resonance studies of the interaction of urea with hen lysozyme. Origins of the conformational change induced in hen lysozyme by N-acetylglucosamine oligosaccharides. , 1992 .