Overview of Electron Crystallography of Membrane Proteins: Crystallization and Screening Strategies Using Negative Stain Electron Microscopy

Electron cryomicroscopy, or cryoEM, is an emerging technique for studying the three‐dimensional structures of proteins and large macromolecular machines. Electron crystallography is a branch of cryoEM in which structures of proteins can be studied at resolutions that rival those achieved by X‐ray crystallography. Electron crystallography employs two‐dimensional crystals of a membrane protein embedded within a lipid bilayer. The key to a successful electron crystallographic experiment is the crystallization, or reconstitution, of the protein of interest. This unit describes ways in which protein can be expressed, purified, and reconstituted into well‐ordered two‐dimensional crystals. A protocol is also provided for negative stain electron microscopy as a tool for screening crystallization trials. When large and well‐ordered crystals are obtained, the structures of both protein and its surrounding membrane can be determined to atomic resolution. Curr. Protoc. Protein Sci. 72:17.15.1‐17.15.11. © 2013 by John Wiley & Sons, Inc.

[1]  J. Walker,et al.  Cryo-electron crystallography of two sub-complexes of bovine complex I reveals the relationship between the membrane and peripheral arms. , 2000, Journal of molecular biology.

[2]  T. Gonen,et al.  Lipid-protein interactions probed by electron crystallography. , 2009, Current opinion in structural biology.

[3]  S. Harrison,et al.  Lipid–protein interactions in double-layered two-dimensional AQP0 crystals , 2005, Nature.

[4]  Samuel Wagner,et al.  Tuning Escherichia coli for membrane protein overexpression , 2008, Proceedings of the National Academy of Sciences.

[5]  B. Nannenga,et al.  Reprogramming chaperone pathways to improve membrane protein expression in Escherichia coli , 2011, Protein science : a publication of the Protein Society.

[6]  Andreas Engel,et al.  Controlled 2D crystallization of membrane proteins using methyl-β-cyclodextrin , 2007 .

[7]  H. Michel,et al.  Comparative analysis and “expression space” coverage of the production of prokaryotic membrane proteins for structural genomics , 2006, Protein science : a publication of the Protein Society.

[8]  Tamir Gonen,et al.  Aquaporin-0 membrane junctions reveal the structure of a closed water pore , 2004, Nature.

[9]  F. Baneyx,et al.  Integrity of N‐ and C‐termini is important for E. coli Hsp31 chaperone activity , 2009, Protein science : a publication of the Protein Society.

[10]  S. Everse,et al.  Differential effect of a his tag at the N- and C-termini: functional studies with recombinant human serum transferrin. , 2002, Biochemistry.

[11]  W. Kühlbrandt,et al.  Projection structure of yidC: a conserved mediator of membrane protein assembly. , 2008, Journal of molecular biology.

[12]  J. Walker,et al.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels. , 1996, Journal of molecular biology.

[13]  R. Grisshammer,et al.  Purification and characterization of the human adenosine A2a receptor functionally expressed in Escherichia coli , 2002 .

[14]  F. Baneyx Recombinant protein expression in Escherichia coli. , 1999, Current opinion in biotechnology.

[15]  D. Madden,et al.  Breaking the bottleneck: eukaryotic membrane protein expression for high-resolution structural studies. , 2007, Journal of structural biology.

[16]  J. Møller,et al.  Interaction of membrane proteins and lipids with solubilizing detergents. , 2000, Biochimica et biophysica acta.

[17]  Gian A Signorell,et al.  Controlled 2D crystallization of membrane proteins using methyl-beta-cyclodextrin. , 2007, Journal of structural biology.

[18]  J. Tucker,et al.  Purification of a rat neurotensin receptor expressed in Escherichia coli. , 1996, The Biochemical journal.

[19]  Y. Fujiyoshi,et al.  The structural study of membrane proteins by electron crystallography. , 1998, Advances in biophysics.

[20]  G. Mosser,et al.  Bio-Beads: an efficient strategy for two-dimensional crystallization of membrane proteins. , 1997, Journal of structural biology.

[21]  E. Padan,et al.  Projection structure of NhaA, a secondary transporter from Escherichia coli, at 4.0 Å resolution , 1999, The EMBO journal.

[22]  Projection map of aquaporin-9 at 7 A resolution. , 2007, Journal of molecular biology.

[23]  N. Unwin,et al.  Refined structure of the nicotinic acetylcholine receptor at 4A resolution. , 2005, Journal of molecular biology.

[24]  A. Engel,et al.  Membrane protein reconstitution and crystallization by controlled dilution , 2003, FEBS letters.

[25]  E. Hochuli Large-scale chromatography of recombinant proteins. , 1988, Journal of chromatography.

[26]  Andreas Engel,et al.  Structural determinants of water permeation through aquaporin-1 , 2000, Nature.

[27]  S. Chan,et al.  Structure and orientation of cytochrome c oxidase in crystalline membranes. Studies by electron microscopy and by labeling with subunit-specific antibodies. , 1978, The Journal of biological chemistry.

[28]  T. Gonen,et al.  Galectin-3 is associated with the plasma membrane of lens fiber cells. , 2000, Investigative ophthalmology & visual science.

[29]  T. Gonen,et al.  Advances in structural and functional analysis of membrane proteins by electron crystallography. , 2011, Structure.

[30]  M. Marín,et al.  Advances in the production of membrane proteins in Pichia pastoris , 2011, Biotechnology journal.