Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine

[1]  N. Rao,et al.  Abundant and Diverse Fungal Microbiota in the Murine Intestine , 2006, Applied and Environmental Microbiology.

[2]  R. Knight,et al.  UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.

[3]  Timothy J. Harlow,et al.  Highways of gene sharing in prokaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[4]  C. Delbès,et al.  Recovery of Partial 16S rDNA Sequences Suggests the Presence of Crenarchaeota in the Human Digestive Ecosystem , 2005, Current Microbiology.

[5]  F. Bäckhed,et al.  Obesity alters gut microbial ecology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[6]  J Barker,et al.  The potential spread of infection caused by aerosol contamination of surfaces after flushing a domestic toilet , 2005, Journal of applied microbiology.

[7]  N. Pace,et al.  Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia , 2005, Applied and Environmental Microbiology.

[8]  S. Mazmanian,et al.  An Immunomodulatory Molecule of Symbiotic Bacteria Directs Maturation of the Host Immune System , 2005, Cell.

[9]  E. Purdom,et al.  Diversity of the Human Intestinal Microbial Flora , 2005, Science.

[10]  R. Fedorak,et al.  Association with Selected Bacteria Does Not Cause Enterocolitis in IL-10 Gene-Deficient Mice Despite a Systemic Immune Response , 2005, Digestive Diseases and Sciences.

[11]  Brent C. Emerson,et al.  Species diversity can drive speciation , 2005, Nature.

[12]  F. Bäckhed,et al.  Host-Bacterial Mutualism in the Human Intestine , 2005, Science.

[13]  Benjamin P. Westover,et al.  Glycan Foraging in Vivo by an Intestine-Adapted Bacterial Symbiont , 2005, Science.

[14]  E. García‐Berthou,et al.  Invasive species are a leading cause of animal extinctions. , 2005, Trends in ecology & evolution.

[15]  J. Handelsman,et al.  Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness , 2005, Applied and Environmental Microbiology.

[16]  S. Tringe,et al.  Comparative Metagenomics of Microbial Communities , 2004, Science.

[17]  Jeffrey I. Gordon Ruth E. Ley,et al.  Extending Our View of Self : the Human Gut Microbiome Initiative ( HGMI ) , 2005 .

[18]  A. Griffin,et al.  Cooperation and competition in pathogenic bacteria , 2004, Nature.

[19]  Marion Leclerc,et al.  Diversity of the archaeal community in 44 anaerobic digesters as determined by single strand conformation polymorphism analysis and 16S rDNA sequencing. , 2004, Environmental microbiology.

[20]  S. Acinas,et al.  Fine-scale phylogenetic architecture of a complex bacterial community , 2004, Nature.

[21]  Ruslan Medzhitov,et al.  Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis , 2004, Cell.

[22]  L. T. Angenent,et al.  Getting a grip on things: how do communities of bacterial symbionts become established in our intestine? , 2004, Nature Immunology.

[23]  D. Kasper,et al.  Polysaccharide Processing and Presentation by the MHCII Pathway , 2004, Cell.

[24]  J. Gordon,et al.  Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[25]  Keiichiro Suzuki,et al.  Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[26]  M. Travisano,et al.  Strategies of microbial cheater control. , 2004, Trends in microbiology.

[27]  F. Cohan Sexual Isolation and Speciation in Bacteria , 2004, Genetica.

[28]  A. Buckling,et al.  Adaptation Limits Diversification of Experimental Bacterial Populations , 2003, Science.

[29]  S. Giovannoni,et al.  The uncultured microbial majority. , 2003, Annual review of microbiology.

[30]  P. Salamon,et al.  Metagenomic Analyses of an Uncultured Viral Community from Human Feces , 2003, Journal of bacteriology.

[31]  F. Powrie,et al.  Colitogenic Th1 Cells Are Present in the Antigen-Experienced T Cell Pool in Normal Mice: Control by CD4+ Regulatory T Cells and IL-101 , 2003, The Journal of Immunology.

[32]  Valeria Souza,et al.  Stress-Induced Mutagenesis in Bacteria , 2003, Science.

[33]  Lynn K. Carmichael,et al.  A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis , 2003, Science.

[34]  N. Pace,et al.  Culture-Independent Molecular Analysis of Microbial Constituents of the Healthy Human Outer Ear , 2003, Journal of Clinical Microbiology.

[35]  W. Doolittle,et al.  Prokaryotic evolution in light of gene transfer. , 2002, Molecular biology and evolution.

[36]  M. L. Chow,et al.  Molecular characterization of bacterial diversity from British Columbia forest soils subjected to disturbance. , 2002, Canadian journal of microbiology.

[37]  E. Zoetendal,et al.  Mucosa-Associated Bacteria in the Human Gastrointestinal Tract Are Uniformly Distributed along the Colon and Differ from the Community Recovered from Feces , 2002, Applied and Environmental Microbiology.

[38]  C. Woese On the evolution of cells , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[39]  Lawrence O. Ticknor,et al.  Empirical and Theoretical Bacterial Diversity in Four Arizona Soils , 2002, Applied and Environmental Microbiology.

[40]  S. Rinaldi,et al.  Cheating and the evolutionary stability of mutualisms , 2002, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[41]  Anthony V. Palumbo,et al.  Spatial and Resource Factors Influencing High Microbial Diversity in Soil , 2002, Applied and Environmental Microbiology.

[42]  W. Murphy,et al.  Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics , 2001, Science.

[43]  F. Taddei,et al.  The rise and fall of mutator bacteria. , 2001, Current opinion in microbiology.

[44]  Willem M. de Vos,et al.  The Host Genotype Affects the Bacterial Community in the Human Gastrointestinal Tract , 2001 .

[45]  E. Delong,et al.  Environmental diversity of bacteria and archaea. , 2001, Systematic biology.

[46]  G. Turner The Ecology of Adaptive Radiation , 2001, Heredity.

[47]  H. Mooney,et al.  The evolutionary impact of invasive species , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[48]  F. Taddei,et al.  Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut , 2001, Science.

[49]  E. Zoetendal,et al.  The Host Genotype Affects the Bacterial Community in the Human Gastronintestinal Tract , 2001 .

[50]  E. Boyle,et al.  The global carbon cycle: a test of our knowledge of earth as a system. , 2000, Science.

[51]  R. Blumberg,et al.  Limited CD4 T-cell diversity associated with colitis in T-cell receptor alpha mutant mice requires a T helper 2 environment. , 2000, Gastroenterology.

[52]  J Lederberg,et al.  Infectious History , 2000, Science.

[53]  Christopher G. Dowson,et al.  Barriers to Genetic Exchange between Bacterial Species: Streptococcus pneumoniae Transformation , 2000, Journal of bacteriology.

[54]  D. Schluter,et al.  The Ecology of Adaptive Radiation , 2000 .

[55]  J. Handelsman,et al.  The Earth's bounty: assessing and accessing soil microbial diversity. , 1999, Trends in biotechnology.

[56]  Suiying Huang,et al.  How Stable Is Stable? Function versus Community Composition , 1999, Applied and Environmental Microbiology.

[57]  M. Neurath,et al.  T cell specificity and cross reactivity towards enterobacteria,Bacteroides,Bifidobacterium, and antigens from resident intestinal flora in humans , 1999, Gut.

[58]  M. Loreau,et al.  Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[59]  P. Kero,et al.  Fecal microflora in healthy infants born by different methods of delivery: permanent changes in intestinal flora after cesarean delivery. , 1999, Journal of pediatric gastroenterology and nutrition.

[60]  R. Sartor,et al.  Resident Enteric Bacteria Are Necessary for Development of Spontaneous Colitis and Immune System Activation in Interleukin-10-Deficient Mice , 1998, Infection and Immunity.

[61]  W. Whitman,et al.  Prokaryotes: the unseen majority. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[62]  F. Cohan,et al.  Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. , 1997, International journal of systematic bacteriology.

[63]  A. Hayday,et al.  T cell receptor-alpha beta-deficient mice fail to develop colitis in the absence of a microbial environment. , 1997, The American journal of pathology.

[64]  R. Mändar,et al.  Transmission of mother's microflora to the newborn at birth. , 1996, Biology of the neonate.

[65]  J. Furne,et al.  Methanogens outcompete sulphate reducing bacteria for H2 in the human colon. , 1994, Gut.

[66]  A. Feller,et al.  Ulcerative colitis-like disease in mice with a disrupted interleukin-2 gene , 1993, Cell.

[67]  C. Czuprynski,et al.  Pathogenesis of Listeria monocytogenes for gnotobiotic rats , 1981, Infection and immunity.

[68]  D. Savage,et al.  Microbial interference and colonization of the murine gastrointestinal tract by Listeria monocytogenes , 1979, Infection and immunity.

[69]  R. Thauer,et al.  Energy conservation in chemotrophic anaerobic bacteria , 1977, Bacteriological reviews.

[70]  D. Wilson A theory of group selection. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[71]  A Koestler,et al.  Ghost in the Machine , 1970 .