Unsupervised Idealization of Ion Channel Recordings by Minimum Description Length: Application to Human PIEZO1-Channels
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Radhakrishnan Gnanasambandam | Christopher Nicolai | Frederick Sachs | Johannes P. Hofgaard | Jakob K. Dreyer | Jakob Kisbye Dreyer | Morten Schak Nielsen | F. Sachs | R. Gnanasambandam | M. Nielsen | Chris Nicolai
[1] A. Scott,et al. A Cluster Analysis Method for Grouping Means in the Analysis of Variance , 1974 .
[2] J. Rissanen,et al. Modeling By Shortest Data Description* , 1978, Autom..
[3] Fred J. Sigworth,et al. Fitting and Statistical Analysis of Single-Channel Records , 1983 .
[4] M B Jackson,et al. Single‐Channel Recording , 1998, Current protocols in neuroscience.
[5] Max A. Little,et al. Steps and bumps: precision extraction of discrete states of molecular machines. , 2010, Biophysical journal.
[6] Frederick Sachs,et al. Biophysics and structure of the patch and the gigaseal. , 2009, Biophysical journal.
[7] Frederick Sachs,et al. Removal of the mechanoprotective influence of the cytoskeleton reveals PIEZO1 is gated by bilayer tension , 2016, Nature Communications.
[8] Frederick Sachs,et al. SOLVING ION CHANNEL KINETICS WITH THE QuB SOFTWARE , 2013 .
[9] J. Huizinga,et al. Statistical Assessment of Change Point Detectors for Single Molecule Kinetic Analysis , 2013, The Journal of Membrane Biology.
[10] A. Auerbach,et al. Maximum likelihood estimation of aggregated Markov processes , 1997, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[11] Thomas Brox,et al. Maximum Likelihood Estimation , 2019, Time Series Analysis.
[12] Koen Visscher,et al. An objective, model-independent method for detection of non-uniform steps in noisy signals , 2008, Comput. Phys. Commun..
[13] F. Qin. Principles of single-channel kinetic analysis. , 2007, Methods in molecular biology.
[14] F. Sachs,et al. Ionic Selectivity and Permeation Properties of Human PIEZO1 Channels , 2015, PloS one.
[15] P. Fearnhead,et al. Optimal detection of changepoints with a linear computational cost , 2011, 1101.1438.
[16] Gene H. Golub,et al. Algorithms for Computing the Sample Variance: Analysis and Recommendations , 1983 .
[17] Frederick Sachs,et al. Maximum likelihood estimation of ion channel kinetics from macroscopic currents. , 2005, Biophysical journal.
[18] Frederick Sachs,et al. Xerocytosis is caused by mutations that alter the kinetics of the mechanosensitive channel PIEZO1 , 2013, Proceedings of the National Academy of Sciences.
[19] B. Sakmann,et al. Single-Channel Recording , 1995, Springer US.
[20] F J Sigworth,et al. Applying hidden Markov models to the analysis of single ion channel activity. , 2002, Biophysical journal.
[21] F. Qin,et al. Estimating single-channel kinetic parameters from idealized patch-clamp data containing missed events. , 1996, Biophysical journal.
[22] B Sakmann,et al. Fast events in single‐channel currents activated by acetylcholine and its analogues at the frog muscle end‐plate. , 1985, The Journal of physiology.
[23] A. VanDongen,et al. A new algorithm for idealizing single ion channel data containing multiple unknown conductance levels. , 1996, Biophysical journal.
[24] Thomas C. M. Lee,et al. An Introduction to Coding Theory and the Two‐Part Minimum Description Length Principle , 2001 .
[25] Frederick Sachs,et al. High-speed pressure clamp , 2002, Pflügers Archiv.
[26] Frederick Sachs,et al. Gating the mechanical channel Piezo1 , 2012, Channels.
[27] H. Akaike,et al. Information Theory and an Extension of the Maximum Likelihood Principle , 1973 .
[28] G. Schwarz. Estimating the Dimension of a Model , 1978 .
[29] Michael Vershinin,et al. A comparison of step-detection methods: how well can you do? , 2008, Biophysical journal.
[30] Lawrence R. Rabiner,et al. A tutorial on hidden Markov models and selected applications in speech recognition , 1989, Proc. IEEE.
[31] Richard A. Davis,et al. Structural Break Estimation for Nonstationary Time Series Models , 2006 .
[32] Axel Munk,et al. Idealizing Ion Channel Recordings by a Jump Segmentation Multiresolution Filter , 2013, IEEE Transactions on NanoBioscience.