Bayesian Electromagnetic Spatio-Temporal Imaging of Extended Sources Based on Matrix Factorization

Accurate estimation of the locations and extents of neural sources from electroencephalography and magnetoencephalography (E/MEG) is challenging, especially for deep and highly correlated neural activities. In this study, we proposed a new fully data-driven source imaging method, source imaging based on spatio-temporal basis function (SI-STBF), which is built upon a Bayesian framework, to address this issue. The SI-STBF is based on the factorization of a source matrix as a product of a sparse coding matrix and a temporal basis function (TBF) matrix, which includes a few TBFs. The prior of the TBF is set in the empirical Bayesian manner. Similarly, for the spatial constraint, the SI-STBF assumes the prior covariance of the coding matrix as a weighted sum of several spatial covariance components. Both the TBFs and the coding matrix are learned from E/MEG simultaneously through variational Bayesian inference. To enable inference on high-resolution source space, we derived a scalable algorithm using convex analysis. The performance of the SI-STBF was assessed using both simulated and experimental E/MEG recordings. Compared with $L_2$-norm constrained methods, the SI-STBF is superior in reconstructing extended sources with less spatial diffusion and less localization error. By virtue of the spatio-temporal factorization of source matrix, the SI-STBF also produces more accurate estimations than spatial-only constraint method for high correlated and deep sources.

[1]  Lei Ding,et al.  Reconstructing spatially extended brain sources via enforcing multiple transform sparseness , 2014, NeuroImage.

[2]  Jun Zhang,et al.  Bayesian spatio-temporal decomposition for electromagnetic imaging of extended sources based on Destrieux atlas , 2018, 2018 13th IEEE Conference on Industrial Electronics and Applications (ICIEA).

[3]  Richard M. Leahy,et al.  Brainstorm: A User-Friendly Application for MEG/EEG Analysis , 2011, Comput. Intell. Neurosci..

[4]  H. Adeli,et al.  of Depressive Women and Men Spatiotemporal Analysis of Relative Convergence of EEGs Reveals Differences Between Brain Dynamics , 2013 .

[5]  Thomas T. Liu,et al.  MEG source imaging method using fast L1 minimum-norm and its applications to signals with brain noise and human resting-state source amplitude images , 2014, NeuroImage.

[6]  R. Ilmoniemi,et al.  Magnetoencephalography-theory, instrumentation, and applications to noninvasive studies of the working human brain , 1993 .

[7]  Younes Zerouali,et al.  MEG–EEG Information Fusion and Electromagnetic Source Imaging: From Theory to Clinical Application in Epilepsy , 2015, Brain Topography.

[8]  Julia P. Owen,et al.  Performance evaluation of the Champagne source reconstruction algorithm on simulated and real M/EEG data , 2012, NeuroImage.

[9]  Théodore Papadopoulo,et al.  OpenMEEG: opensource software for quasistatic bioelectromagnetics , 2010, Biomedical engineering online.

[10]  Karl J. Friston,et al.  Diffusion-based spatial priors for imaging , 2007, NeuroImage.

[11]  Geertjan Huiskamp,et al.  Regional Differences in the Sensitivity of MEG for Interictal Spikes in Epilepsy , 2010, Brain Topography.

[12]  Wei Wu,et al.  Bayesian electromagnetic spatio-temporal imaging of extended sources with Markov Random Field and temporal basis expansion , 2016, NeuroImage.

[13]  Richard N Henson,et al.  A multi-subject, multi-modal human neuroimaging dataset , 2015, Scientific Data.

[14]  R. Hari,et al.  Magnetoencephalography in the study of human somatosensory cortical processing. , 1999, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[15]  Dezhong Yao,et al.  fMRI functional networks for EEG source imaging , 2011, Human brain mapping.

[16]  Lei Ding,et al.  Sparse source imaging in electroencephalography with accurate field modeling , 2008, Human brain mapping.

[17]  Lei Ding,et al.  Simultaneous EEG and MEG source reconstruction in sparse electromagnetic source imaging , 2013, Human brain mapping.

[18]  Bin He,et al.  Evaluation of cortical current density imaging methods using intracranial electrocorticograms and functional MRI , 2007, NeuroImage.

[19]  D. Lehmann,et al.  Low resolution electromagnetic tomography: a new method for localizing electrical activity in the brain. , 1994, International journal of psychophysiology : official journal of the International Organization of Psychophysiology.

[20]  Bin He,et al.  Electrophysiological Imaging of Brain Activity and Connectivity—Challenges and Opportunities , 2011, IEEE Transactions on Biomedical Engineering.

[21]  R. Ilmoniemi,et al.  Interpreting magnetic fields of the brain: minimum norm estimates , 2006, Medical and Biological Engineering and Computing.

[22]  Wei Wu,et al.  Bayesian Machine Learning: EEG\/MEG signal processing measurements , 2016, IEEE Signal Processing Magazine.

[23]  Karl J. Friston,et al.  Anatomically Informed Basis Functions for EEG Source Localization: Combining Functional and Anatomical Constraints , 2002, NeuroImage.

[24]  David P. Wipf,et al.  A unified Bayesian framework for MEG/EEG source imaging , 2009, NeuroImage.

[25]  Hagai Attias,et al.  Probabilistic algorithms for MEG/EEG source reconstruction using temporal basis functions learned from data , 2008, NeuroImage.

[26]  Bin He,et al.  Imaging brain source extent from EEG/MEG by means of an iteratively reweighted edge sparsity minimization (IRES) strategy , 2016, NeuroImage.

[27]  Eduardo Martínez-Montes,et al.  EEG source imaging with spatio‐temporal tomographic nonnegative independent component analysis , 2009, Human brain mapping.

[28]  Wei Wu,et al.  Variation sparse source imaging based on conditional mean for electromagnetic extended sources , 2018, Neurocomputing.

[29]  Claudio Pollo,et al.  Electroencephalographic source imaging: a prospective study of 152 operated epileptic patients , 2011, Brain : a journal of neurology.

[30]  J. Ebersole,et al.  Intracranial EEG Substrates of Scalp EEG Interictal Spikes , 2005, Epilepsia.

[31]  Anders M. Dale,et al.  Improved Localization of Cortical Activity By Combining EEG and MEG with MRI Cortical Surface Reconstruction , 2002 .

[32]  Bin He,et al.  EEG Source Imaging Enhances the Decoding of Complex Right-Hand Motor Imagery Tasks , 2016, IEEE Transactions on Biomedical Engineering.

[33]  Jen-Chuen Hsieh,et al.  Author's Personal Copy Spatially Sparse Source Cluster Modeling by Compressive Neuromagnetic Tomography , 2022 .

[34]  Karl J. Friston,et al.  Algorithmic procedures for Bayesian MEG/EEG source reconstruction in SPM , 2014, NeuroImage.

[35]  Masa-aki Sato,et al.  Hierarchical Bayesian estimation for MEG inverse problem , 2004, NeuroImage.

[36]  Nelson J. Trujillo-Barreto,et al.  Bayesian M/EEG source reconstruction with spatio-temporal priors , 2008, NeuroImage.

[37]  Richard M. Leahy,et al.  Electromagnetic brain mapping , 2001, IEEE Signal Process. Mag..

[38]  Toshimitsu Musha,et al.  Electric Dipole Tracing in the Brain by Means of the Boundary Element Method and Its Accuracy , 1987, IEEE Transactions on Biomedical Engineering.

[39]  Barry D. Van Veen,et al.  Cortical patch basis model for spatially extended neural activity , 2006, IEEE Transactions on Biomedical Engineering.

[40]  Kevin P. Murphy,et al.  Machine learning - a probabilistic perspective , 2012, Adaptive computation and machine learning series.

[41]  Polina Golland,et al.  A distributed spatio-temporal EEG/MEG inverse solver , 2009, NeuroImage.

[42]  Stefan Haufe,et al.  Large-scale EEG/MEG source localization with spatial flexibility , 2011, NeuroImage.

[43]  J.C. Mosher,et al.  Multiple dipole modeling and localization from spatio-temporal MEG data , 1992, IEEE Transactions on Biomedical Engineering.

[44]  Julia P. Owen,et al.  Robust Bayesian estimation of the location, orientation, and time course of multiple correlated neural sources using MEG , 2010, NeuroImage.

[45]  Karl J. Friston,et al.  Multiple sparse priors for the M/EEG inverse problem , 2008, NeuroImage.

[46]  Jens Haueisen,et al.  Time-frequency mixed-norm estimates: Sparse M/EEG imaging with non-stationary source activations , 2013, NeuroImage.

[47]  Robert D. Nowak,et al.  Space–time event sparse penalization for magneto-/electroencephalography , 2009, NeuroImage.

[48]  Christophe Grova,et al.  MEG Source Localization of Spatially Extended Generators of Epileptic Activity: Comparing Entropic and Hierarchical Bayesian Approaches , 2013, PloS one.

[49]  R. Hari,et al.  Activation of the human posterior parietal cortex by median nerve stimulation , 2004, Experimental Brain Research.

[50]  R D Pascual-Marqui,et al.  Standardized low-resolution brain electromagnetic tomography (sLORETA): technical details. , 2002, Methods and findings in experimental and clinical pharmacology.

[51]  Christoph M. Michel,et al.  Electrical neuroimaging based on biophysical constraints , 2004, NeuroImage.

[52]  Lars Kai Hansen,et al.  A hierarchical Bayesian M/EEG imagingmethod correcting for incomplete spatio-temporal priors , 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging.

[53]  Jean Gotman,et al.  Evaluation of EEG localization methods using realistic simulations of interictal spikes , 2006, NeuroImage.

[54]  N. Otsu A threshold selection method from gray level histograms , 1979 .