Automatic Detection of Regions in Spinach Canopies Responding to Soil Moisture Deficit Using Combined Visible and Thermal Imagery

Thermal imaging has been used in the past for remote detection of regions of canopy showing symptoms of stress, including water deficit stress. Stress indices derived from thermal images have been used as an indicator of canopy water status, but these depend on the choice of reference surfaces and environmental conditions and can be confounded by variations in complex canopy structure. Therefore, in this work, instead of using stress indices, information from thermal and visible light imagery was combined along with machine learning techniques to identify regions of canopy showing a response to soil water deficit. Thermal and visible light images of a spinach canopy with different levels of soil moisture were captured. Statistical measurements from these images were extracted and used to classify between canopies growing in well-watered soil or under soil moisture deficit using Support Vector Machines (SVM) and Gaussian Processes Classifier (GPC) and a combination of both the classifiers. The classification results show a high correlation with soil moisture. We demonstrate that regions of a spinach crop responding to soil water deficit can be identified by using machine learning techniques with a high accuracy of 97%. This method could, in principle, be applied to any crop at a range of scales.

[1]  F. Thomas,et al.  Use of thermal imaging to determine leaf conductance along a canopy gradient in European beech (Fagus sylvatica). , 2012, Tree physiology.

[2]  Hamlyn G. Jones,et al.  Thermal imaging as a viable tool for monitoring plant stress , 2007 .

[3]  Hamlyn G. Jones,et al.  Use of infrared thermometry for estimation of stomatal conductance as a possible aid to irrigation scheduling , 1999 .

[4]  Steven W. Running,et al.  Remote detection of canopy water stress in coniferous forests using the NS001 thematic mapper simulator and the thermal infrared multispectral scanner. , 1990 .

[5]  Carl E. Rasmussen,et al.  Gaussian processes for machine learning , 2005, Adaptive computation and machine learning.

[6]  Diego L. Valera,et al.  Determining the emissivity of the leaves of nine horticultural crops by means of infrared thermography , 2012 .

[7]  Hamlyn G. Jones,et al.  Use of thermography for quantitative studies of spatial and temporal variation of stomatal conductance over leaf surfaces , 1999 .

[8]  Farid Melgani,et al.  Gaussian Process Approach to Remote Sensing Image Classification , 2010, IEEE Transactions on Geoscience and Remote Sensing.

[9]  H. Jones,et al.  Combining thermal and visible imagery for estimating canopy temperature and identifying plant stress. , 2004, Journal of experimental botany.

[10]  Yafang Xue,et al.  Optical Character Recognition , 2022 .

[11]  Chellu Chandra Sekhar,et al.  Hyperparameters of Gaussian process as features for trajectory classification , 2008, 2008 IEEE International Joint Conference on Neural Networks (IEEE World Congress on Computational Intelligence).

[12]  R. Jackson Canopy Temperature and Crop Water Stress , 1982 .

[13]  Jitendra Malik,et al.  Scale-Space and Edge Detection Using Anisotropic Diffusion , 1990, IEEE Trans. Pattern Anal. Mach. Intell..

[14]  H. Jones,et al.  Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. , 2006, Journal of experimental botany.

[15]  Maria Manuela Chaves,et al.  Optimizing thermal imaging as a technique for detecting stomatal closure induced by drought stress under greenhouse conditions , 2006 .

[16]  S. Idso,et al.  Canopy temperature as a crop water stress indicator , 1981 .

[17]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[18]  Marcel Fuchs,et al.  Infrared measurement of canopy temperature and detection of plant water stress , 1990 .

[19]  Mark Ebden Gaussian Processes for Regression: A Quick Introduction , 2008 .

[20]  S. Idso,et al.  Normalizing the stress-degree-day parameter for environmental variability☆ , 1981 .

[21]  Jörg Peter Baresel,et al.  A Comparison of Plant Temperatures as Measured by Thermal Imaging and Infrared Thermometry: Thermal Imaging and IR Thermometry , 2012 .

[22]  Y. Cohen,et al.  Use of thermal and visible imagery for estimating crop water status of irrigated grapevine. , 2006, Journal of experimental botany.

[23]  H. Jones Plants and Microclimate: Other environmental factors: wind, altitude, climate change and atmospheric pollutants , 2013 .

[24]  Y. Cohen,et al.  Use of aerial thermal imaging to estimate water status of palm trees , 2011, Precision Agriculture.

[25]  M. Meron,et al.  Evaluation of different approaches for estimating and mapping crop water status in cotton with thermal imaging , 2010, Precision Agriculture.

[26]  Manfred Stoll,et al.  Use of infrared thermography for monitoring stomatal closure in the field: application to grapevine. , 2002, Journal of experimental botany.

[27]  Wilhelm Burger,et al.  Digital Image Processing - An Algorithmic Introduction using Java , 2008, Texts in Computer Science.

[28]  I Leinonen,et al.  Estimating stomatal conductance with thermal imagery. , 2006, Plant, cell & environment.

[29]  Claus Buschmann Plants and Microclimate — A Quantitative Approach to Environmental Plant Physiology, 2nd edition, H.G. Jones. Cambridge University Press (1992), 428 pp., (ISBN 0-521-42524-7). Price: 19.95 Pounds. , 1993 .