Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex
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M. Anisimova | S. Carrère | S. Genin | N. Peeters | L. Plener | A. Cazalé | Laure Plener
[1] M. Valls,et al. Ralstonia solanacearum, a widespread bacterial plant pathogen in the post-genomic era. , 2013, Molecular plant pathology.
[2] R. Dudler. Manipulation of host proteasomes as a virulence mechanism of plant pathogens. , 2013, Annual review of phytopathology.
[3] H. Heuer,et al. Breaking the DNA-binding code of Ralstonia solanacearum TAL effectors provides new possibilities to generate plant resistance genes against bacterial wilt disease. , 2013, The New phytologist.
[4] Maria Anisimova,et al. Graph-based modeling of tandem repeats improves global multiple sequence alignment , 2013, Nucleic acids research.
[5] B. Tian,et al. Genome Sequencing of Ralstonia solanacearum FQY_4, Isolated from a Bacterial Wilt Nursery Used for Breeding Crop Resistance , 2013, Genome Announcements.
[6] Marcelo Serrano Zanetti,et al. CodonPhyML: Fast Maximum Likelihood Phylogeny Estimation under Codon Substitution Models , 2013, Molecular biology and evolution.
[7] Eugene V. Koonin,et al. A Tight Link between Orthologs and Bidirectional Best Hits in Bacterial and Archaeal Genomes , 2012, Genome biology and evolution.
[8] G. Salmond,et al. Top 10 plant pathogenic bacteria in molecular plant pathology. , 2012, Molecular plant pathology.
[9] Jonathan D. G. Jones,et al. The awr gene family encodes a novel class of Ralstonia solanacearum type III effectors displaying virulence and avirulence activities. , 2012, Molecular plant-microbe interactions : MPMI.
[10] M. S. Mukhtar,et al. The molecular basis of host specialization in bean pathovars of Pseudomonas syringae. , 2012, Molecular plant-microbe interactions : MPMI.
[11] Jean-Charles de Cambiaire,et al. Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA , 2011, The ISME Journal.
[12] C. Médigue,et al. Sequencing of K60, Type Strain of the Major Plant Pathogen Ralstonia solanacearum , 2012, Journal of bacteriology.
[13] S. Genin,et al. Pathogenomics of the Ralstonia solanacearum species complex. , 2012, Annual review of phytopathology.
[14] M. Anisimova,et al. Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts , 2011, The New phytologist.
[15] M. Borodovsky,et al. A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. , 2011, Molecular biology and evolution.
[16] Yong Liu,et al. Genome Sequence of the Tobacco Bacterial Wilt Pathogen Ralstonia solanacearum , 2011, Journal of bacteriology.
[17] C. Médigue,et al. Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles , 2011, PloS one.
[18] Arcady R. Mushegian,et al. Computational methods for Gene Orthology inference , 2011, Briefings Bioinform..
[19] M. Shahid Mukhtar,et al. Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates , 2011, PLoS pathogens.
[20] Maria Anisimova,et al. Markov Models of Amino Acid Substitution to Study Proteins with Intrinsically Disordered Regions , 2011, PloS one.
[21] O. Gascuel,et al. Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes , 2011, Systematic biology.
[22] J. M. Dow,et al. Pathogenomics of Xanthomonas: understanding bacterium–plant interactions , 2011, Nature Reviews Microbiology.
[23] Peer Bork,et al. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy , 2011, Nucleic Acids Res..
[24] Y. Marco,et al. Autoacetylation of the Ralstonia solanacearum Effector PopP2 Targets a Lysine Residue Essential for RRS1-R-Mediated Immunity in Arabidopsis , 2010, PLoS pathogens.
[25] S. Genin. Molecular traits controlling host range and adaptation to plants in Ralstonia solanacearum. , 2010, The New phytologist.
[26] X. Didelot,et al. Impact of recombination on bacterial evolution. , 2010, Trends in microbiology.
[27] C. Allen,et al. PopW of Ralstonia solanacearum, a new two-domain harpin targeting the plant cell wall. , 2010, Molecular plant pathology.
[28] O. Gascuel,et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.
[29] Masaki Iwabuchi,et al. Genome-wide identification of a large repertoire of Ralstonia solanacearum type III effector proteins by a new functional screen. , 2010, Molecular plant-microbe interactions : MPMI.
[30] C. Manceau,et al. Correction: A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas , 2009, PLoS ONE.
[31] Frédéric Lardeux,et al. A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas , 2009, PloS one.
[32] T. Mukaihara,et al. Identification of novel Ralstonia solanacearum type III effector proteins through translocation analysis of hrpB-regulated gene products. , 2009, Microbiology.
[33] C. Boucher,et al. Two type III secretion system effectors from Ralstonia solanacearum GMI1000 determine host-range specificity on tobacco. , 2009, Molecular plant-microbe interactions : MPMI.
[34] S. Genin,et al. Secreted proteins from Ralstonia solanacearum: a hundred tricks to kill a plant. , 2009, Current opinion in microbiology.
[35] C. Kado,et al. Horizontal gene transfer: sustaining pathogenicity and optimizing host-pathogen interactions. , 2009, Molecular plant pathology.
[36] M. Tyers,et al. Structure of the Shigella T3SS effector IpaH defines a new class of E3 ubiquitin ligases , 2008, Nature Structural &Molecular Biology.
[37] P. O’Reilly,et al. Confounding between recombination and selection, and the Ped/Pop method for detecting selection. , 2008, Genome research.
[38] Y. Marco,et al. RD19, an Arabidopsis Cysteine Protease Required for RRS1-R–Mediated Resistance, Is Relocalized to the Nucleus by the Ralstonia solanacearum PopP2 Effector[W] , 2008, The Plant Cell Online.
[39] O. Gascuel,et al. An improved general amino acid replacement matrix. , 2008, Molecular biology and evolution.
[40] M. Anisimova,et al. Origin and Evolution of GALA-LRR, a New Member of the CC-LRR Subfamily: From Plants to Bacteria? , 2008, PloS one.
[41] B. Labedan,et al. Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data , 2007, BMC Evolutionary Biology.
[42] T. Vogel,et al. Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms , 2007, PloS one.
[43] A. Breitkreutz,et al. Type III secretion effectors of the IpaH family are E3 ubiquitin ligases. , 2007, Cell host & microbe.
[44] A. Vergunst,et al. Exploitation of Eukaryotic Ubiquitin Signaling Pathways by Effectors Translocated by Bacterial Type III and Type IV Secretion Systems , 2007, PLoS pathogens.
[45] C. Boucher,et al. Genomic Structure and Phylogeny of the Plant Pathogen Ralstonia solanacearum Inferred from Gene Distribution Analysis , 2006, Journal of bacteriology.
[46] P. Genschik,et al. Ralstonia solanacearum requires F-box-like domain-containing type III effectors to promote disease on several host plants , 2006, Proceedings of the National Academy of Sciences.
[47] Christian Boucher,et al. PopF1 and PopF2, Two Proteins Secreted by the Type III Protein Secretion System of Ralstonia solanacearum, Are Translocators Belonging to the HrpF/NopX Family , 2006, Journal of bacteriology.
[48] S. Tishkoff,et al. Positive Selection Can Create False Hotspots of Recombination , 2006, Genetics.
[49] Alan Collmer,et al. Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen Pseudomonas syringae. , 2005, Molecular plant-microbe interactions : MPMI.
[50] Alain Giron,et al. Detection and characterization of horizontal transfers in prokaryotes using genomic signature , 2005, Nucleic acids research.
[51] C. Allen,et al. How complex is the Ralstonia solanacearum species complex , 2005 .
[52] C. Allen,et al. The current bacterial wilt situation: a global overview. , 2005 .
[53] T. Mukaihara,et al. Genetic screening of Hrp type III‐related pathogenicity genes controlled by the HrpB transcriptional activator in Ralstonia solanacearum , 2004, Molecular microbiology.
[54] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[55] A. Dessen,et al. The V Antigen of Pseudomonas aeruginosa Is Required for Assembly of the Functional PopB/PopD Translocation Pore in Host Cell Membranes , 2004, Infection and Immunity.
[56] C. Boucher,et al. Distribution and sequence analysis of a family of type ill-dependent effectors correlate with the phylogeny of Ralstonia solanacearum strains. , 2004, Molecular plant-microbe interactions : MPMI.
[57] C. Boucher,et al. Inventory and functional analysis of the large Hrp regulon in Ralstonia solanacearum: identification of novel effector proteins translocated to plant host cells through the type III secretion system , 2004, Molecular microbiology.
[58] C. Boucher,et al. Characterization of the cis-Acting Regulatory Element Controlling HrpB-Mediated Activation of the Type III Secretion System and Effector Genes in Ralstonia solanacearum , 2004, Journal of bacteriology.
[59] Ziheng Yang. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods , 1994, Journal of Molecular Evolution.
[60] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[61] R. Nielsen,et al. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. , 2003, Genetics.
[62] Thomas Schiex,et al. FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences , 2003, Nucleic Acids Res..
[63] I. Somssich,et al. Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[64] N. Grimsley,et al. PopP1, a new member of the YopJ/AvrRxv family of type III effector proteins, acts as a host-specificity factor and modulates aggressiveness of Ralstonia solanacearum. , 2002, Molecular plant-microbe interactions : MPMI.
[65] U. Bonas,et al. Functional Analysis of HrpF, a Putative Type III Translocon Protein from Xanthomonas campestris pv. vesicatoria , 2002, Journal of bacteriology.
[66] P. Fearnhead,et al. A coalescent-based method for detecting and estimating recombination from gene sequences. , 2002, Genetics.
[67] J. Beynon,et al. Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[68] N. Goldman,et al. Codon-substitution models for heterogeneous selection pressure at amino acid sites. , 2000, Genetics.
[69] M. Gueneron,et al. Two novel proteins, PopB, which has functional nuclear localization signals, and PopC, which has a large leucine‐rich repeat domain, are secreted through the Hrp‐secretion apparatus of Ralstonia solanacearum , 2000, Molecular microbiology.
[70] S. Pettersson,et al. The Salmonella YopJ-homologue AvrA does not possess YopJ-like activity. , 2000, Microbial pathogenesis.
[71] R. Overbeek,et al. Searching for patterns in genomic data. , 1997, Trends in genetics : TIG.
[72] I. Yano,et al. Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia Gen. Nov. , 1995, Microbiology and immunology.
[73] N. Goldman,et al. A codon-based model of nucleotide substitution for protein-coding DNA sequences. , 1994, Molecular biology and evolution.
[74] C. Boucher,et al. PopA1, a protein which induces a hypersensitivity‐like response on specific Petunia genotypes, is secreted via the Hrp pathway of Pseudomonas solanacearum. , 1994, The EMBO journal.
[75] B. Carney,et al. A cloned avirulence gene from Pseudomonas solanacearum determines incompatibility on Nicotiana tabacum at the host species level , 1990, Journal of bacteriology.