Automatic Pattern Extraction and Classification for Chromosome Images

Chromosome image analysis and pattern classification is one of the essential tasks in genetic syndrome diagnoses. An automatic procedure is introduced for chromosome image analysis. The pale-path algorithm is proposed to segment touching and overlapping chromosomes. Medial axis is extracted by the middle point algorithm. Chromosome band is enhanced by the algorithm based on multiscale wavelets Bi-spline, and extracted by average gray profile, gradient profile and shape profile. The multilayer classifier is used to classify the chromosome pattern calculated by weighted density distribution algorithm. Experiment results demonstrate that the algorithms perform well.

[1]  Its'hak Dinstein,et al.  A classification-driven partially occluded object segmentation (CPOOS) method with application to chromosome analysis , 1998, IEEE Trans. Signal Process..

[2]  Shibo Li,et al.  Development and assessment of an integrated computer-aided detection scheme for digital microscopic images of metaphase chromosomes , 2008, J. Electronic Imaging.

[3]  Antonio Scialdone,et al.  Pairing of homologous chromosomes as phase transition , 2007, SPIE Micro + Nano Materials, Devices, and Applications.

[4]  Gunter Ritter,et al.  Profile and feature extraction from chromosomes , 2000, Proceedings 15th International Conference on Pattern Recognition. ICPR-2000.

[5]  Xiaohua Chen,et al.  Automatic segmentation of overlapping and touching chromosomes , 2001, International Symposium on Multispectral Image Processing and Pattern Recognition.

[6]  Iscn International System for Human Cytogenetic Nomenclature , 1978 .

[7]  Rabab Kreidieh Ward,et al.  Feature analysis and centromere segmentation of human chromosome images using an iterative fuzzy algorithm , 2002, IEEE Transactions on Biomedical Engineering.

[8]  T. Caspersson,et al.  The 24 fluorescence patterns of the human metaphase chromosomes - distinguishing characters and variability. , 2009, Hereditas.

[9]  Elo Harald Hansen,et al.  High speed automatic analysis , 1981 .

[10]  Hong Liu,et al.  Development of an integrated computerized scheme for metaphase chromosome image analysis: a robustness experiment , 2008, SPIE BiOS.

[11]  Zixiang Xiong,et al.  Chromosome image enhancement using multiscale differential operators , 2003, IEEE Transactions on Medical Imaging.

[12]  Xu Weidong,et al.  Two intelligent algorithms applied to automatic chromosome incision , 2003, 2003 IEEE International Conference on Acoustics, Speech, and Signal Processing, 2003. Proceedings. (ICASSP '03)..

[13]  R S LEDLEY,et al.  HIGH-SPEED AUTOMATIC ANALYSIS OF BIOMEDICAL PICTURES. , 1964, Science.

[14]  Gunter Ritter,et al.  Using dominant points and variants for profile extraction from chromosomes , 2001, Pattern Recognit..

[15]  Qiang Wu,et al.  Globally optimal classification and pairing of human chromosomes , 2004, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[16]  B H Mayall,et al.  Experience with the Athena semi-automated karyotyping system. , 1990, Cytometry.

[17]  Jim Graham,et al.  Disentangling chromosome overlaps by combining trainable shape models with classification evidence , 2002, IEEE Trans. Signal Process..