Genetic population differentiation and connectivity among fragmented Moor frog (Rana arvalis) populations in The Netherlands

We studied the effects of landscape structure, habitat loss and fragmentation on genetic differentiation of Moor frog populations in two landscapes in The Netherlands (Drenthe and Noord-Brabant). Microsatellite data of eight loci showed small to moderate genetic differentiation among populations in both landscapes (FST values 0.022 and 0.060, respectively). Both heterozygosity and population differentiation indicate a lower level of gene flow among populations in Noord-Brabant, where populations were further apart and have experienced a higher degree of fragmentation for a longer period of time as compared to populations in Drenthe. A significant isolation-by-distance pattern was found in Drenthe, indicating a limitation in dispersal among populations due to geographic distance. In Noord-Brabant a similar positive correlation was obtained only after the exclusion of a single long-time isolated population. After randomised exclusion of populations a significant additional negative effect of roads was found but not of other landscape elements. These results are discussed in view of improving methodology of assessing the effects of landscape elements on connectivity.

[1]  R. Bugter,et al.  Microsatellite markers for the European tree frog Hyla arborea , 2000, Molecular ecology.

[2]  T. Burke,et al.  Comparative analysis of intra- and interpopulation genetic diversity in Bufo bufo, using allozyme, single-locus microsatellite, minisatellite, and multilocus minisatellite data. , 1994, Molecular biology and evolution.

[3]  D. Schmeller,et al.  High degree of population subdivision in a widespread amphibian , 2004, Molecular ecology.

[4]  B. Manly Randomization, Bootstrap and Monte Carlo Methods in Biology , 2018 .

[5]  R. Harrison,et al.  Nuclear gene genealogies reveal historical, demographic and selective factors associated with speciation in field crickets. , 2003, Genetics.

[6]  P. Crochet Can measures of gene flow help to evaluate bird dispersal , 1996 .

[7]  C. Vos A frog's-eye view of the landscape : quantifying connectivity for fragmented amphibian populations , 1999 .

[8]  M. Evans,et al.  Considerations for measuring genetic variation and population structure with multilocus fingerprinting , 1998 .

[9]  Claire C. Vos,et al.  Corridors and Species Dispersal , 2002 .

[10]  J. Neigel,et al.  A COMPARISON OF ALTERNATIVE STRATEGIES FOR ESTIMATINGGENE FLOW FROM GENETIC MARKERS1 , 1997 .

[11]  M Raymond,et al.  Testing differentiation in diploid populations. , 1996, Genetics.

[12]  E. Matthysen,et al.  Incorporating landscape elements into a connectivity measure: a case study for the Speckled wood butterfly (Pararge aegeria L.) , 2003, Landscape Ecology.

[13]  M. Whitlock,et al.  Indirect measures of gene flow and migration: FST≠1/(4Nm+1) , 1999, Heredity.

[14]  John A. Wiens,et al.  Metapopulation dynamics and landscape ecology , 1997 .

[15]  R. Forman Land Mosaics: The Ecology of Landscapes and Regions , 1995 .

[16]  Sue J. Welham,et al.  Genstat 5 release 3 reference manual , 1994 .

[17]  A. Meyer,et al.  Post-mating clutch piracy in an amphibian , 2004, Nature.

[18]  M. Gilpin,et al.  Metapopulation Biology: Ecology, Genetics, and Evolution , 1997 .

[19]  Terry Burke,et al.  Environmental correlates of toad abundance and population genetic diversity , 2001 .

[20]  Kevin J. Gutzwiller,et al.  Applying Landscape Ecology in Biological Conservation , 2002, Springer New York.

[21]  Pierre Taberlet,et al.  Landscape genetics: combining landscape ecology and population genetics , 2003 .

[22]  W. Rice ANALYZING TABLES OF STATISTICAL TESTS , 1989, Evolution; international journal of organic evolution.

[23]  M. Nei,et al.  Estimation of average heterozygosity and genetic distance from a small number of individuals. , 1978, Genetics.

[24]  Paul Opdam,et al.  Landscape cohesion: an index for the conservation potential of landscapes for biodiversity , 2003, Landscape Ecology.

[25]  Helene H. Wagner,et al.  A brief guide to Landscape Genetics , 2006, Landscape Ecology.

[26]  P. Crochet,et al.  Contrasting Levels of Variation in Neutral and Quantitative Genetic Loci on Island Populations of Moor Frogs (Rana arvalis) , 2006, Conservation Genetics.

[27]  J. Bossart,et al.  Genetic estimates of population structure and gene flow: Limitations, lessons and new directions. , 1998, Trends in ecology & evolution.

[28]  C. Cockerham,et al.  Analyses of gene frequencies. , 1973, Genetics.

[29]  P. Donnelly,et al.  Inference of population structure using multilocus genotype data. , 2000, Genetics.

[30]  F. Balloux EASYPOP (version 1.7): a computer program for population genetics simulations. , 2001, The Journal of heredity.

[31]  A. Reinsch,et al.  Microsatellite markers for the European Roe deer (Capreolus capreolus) , 2000, Molecular ecology.

[32]  V. Chapman,et al.  Construction of random small-insert genomic libraries highly enriched for simple sequence repeats. , 1993, Nucleic acids research.

[33]  M. Smulders,et al.  Genetic similarity as a measure for connectivity between fragmented populations of the moor frog (Rana arvalis) , 2001, Heredity.

[34]  B. Weir,et al.  ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.

[35]  C. Vos,et al.  Effects of habitat fragmentation and road density on the distribution pattern of the moor frog Rana arvalis , 1998 .

[36]  T. Beebee,et al.  Contrasting population structures in two sympatric anurans: implications for species conservation , 2004, Heredity.

[37]  T. Ricketts The Matrix Matters: Effective Isolation in Fragmented Landscapes , 2001, The American Naturalist.

[38]  M. Baguette,et al.  Gene flow and functional connectivity in the natterjack toad , 2006, Molecular ecology.

[39]  R. Newman,et al.  Microsatellite variation and fine‐scale population structure in the wood frog (Rana sylvatica) , 2001, Molecular ecology.

[40]  A. Templeton,et al.  CORRELATION OF PAIRWISE GENETIC AND GEOGRAPHIC DISTANCE MEASURES: INFERRING THE RELATIVE INFLUENCES OF GENE FLOW AND DRIFT ON THE DISTRIBUTION OF GENETIC VARIABILITY , 1999, Evolution; international journal of organic evolution.

[41]  E. Thompson,et al.  Performing the exact test of Hardy-Weinberg proportion for multiple alleles. , 1992, Biometrics.

[42]  N. Mantel The detection of disease clustering and a generalized regression approach. , 1967, Cancer research.