Real-time Transcriptional Profiling of Cellular and Viral Gene Expression during Lytic Cytomegalovirus Infection
暂无分享,去创建一个
Thomas Bonfert | Caroline C. Friedel | Ralf Zimmer | Lars Dölken | Philip Rosenstiel | Lukas Windhager | Jens B. Bosse | Michael Lidschreiber | R. Zimmer | P. Rosenstiel | L. Dölken | C. Friedel | Thomas Bonfert | Z. Ruzsics | J. Bosse | Bernd Rädle | Lukas Windhager | M. de Graaf | Miranda de Graaf | Lisa Marcinowski | Zsolt Ruzsics | Ildiko Györy | Martina Rieder | Bernd Rädle | Olivia Prazeres da Costa | Lisa Marcinowski | Michael Lidschreiber | Ildikó Györy | Martina Rieder | Ildikó Györy
[1] W. Hammerschmidt,et al. RNAs in Epstein–Barr virions control early steps of infection , 2012, Proceedings of the National Academy of Sciences.
[2] S. Kaufmann,et al. Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution , 2012, Genome research.
[3] P. Ghazal,et al. Viral Mediated Redirection of NEMO/IKKγ to Autophagosomes Curtails the Inflammatory Cascade , 2012, PLoS pathogens.
[4] S. Jonjić,et al. All is fair in virus-host interactions: NK cells and cytomegalovirus. , 2011, Trends in molecular medicine.
[5] Zhikang Qian,et al. The Human Cytomegalovirus Protein pUL38 Suppresses Endoplasmic Reticulum Stress-Mediated Cell Death Independently of Its Ability To Induce mTORC1 Activation , 2011, Journal of Virology.
[6] U. Koszinowski,et al. M94 Is Essential for the Secondary Envelopment of Murine Cytomegalovirus , 2011, Journal of Virology.
[7] M. Selbach,et al. Global quantification of mammalian gene expression control , 2011, Nature.
[8] N. Friedman,et al. Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells , 2011, Nature Biotechnology.
[9] Achim Tresch,et al. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast , 2011, Molecular systems biology.
[10] L. Dölken,et al. Dominant Negative Mutants of the Murine Cytomegalovirus M53 Gene Block Nuclear Egress and Inhibit Capsid Maturation , 2010, Journal of Virology.
[11] P. Schlag,et al. Activation of the CMV-IE Promoter by Hyperthermia In Vitro and In Vivo: Biphasic Heat Induction of Cytosine Deaminase Suicide Gene Expression , 2010, Molecular biotechnology.
[12] J. Sinclair. Chromatin structure regulates human cytomegalovirus gene expression during latency, reactivation and lytic infection. , 2010, Biochimica et biophysica acta.
[13] K. Grünewald,et al. The m74 Gene Product of Murine Cytomegalovirus (MCMV) Is a Functional Homolog of Human CMV gO and Determines the Entry Pathway of MCMV , 2010, Journal of Virology.
[14] P. Caposio,et al. The Elk-1 and Serum Response Factor Binding Sites in the Major Immediate-Early Promoter of Human Cytomegalovirus Are Required for Efficient Viral Replication in Quiescent Cells and Compensate for Inactivation of the NF-κB Sites in Proliferating Cells , 2010, Journal of Virology.
[15] M. Abecassis,et al. Biphasic Recruitment of Transcriptional Repressors to the Murine Cytomegalovirus Major Immediate-Early Promoter during the Course of Infection In Vivo , 2010, Journal of Virology.
[16] Peter Dalgaard,et al. R Development Core Team (2010): R: A language and environment for statistical computing , 2010 .
[17] L. Dölken,et al. Metabolic tagging and purification of nascent RNA: implications for transcriptomics. , 2009, Molecular bioSystems.
[18] M. Reeves,et al. Lytic infection of permissive cells with human cytomegalovirus is regulated by an intrinsic 'pre-immediate-early' repression of viral gene expression mediated by histone post-translational modification. , 2009, The Journal of general virology.
[19] Caroline C. Friedel,et al. Conserved principles of mammalian transcriptional regulation revealed by RNA half-life , 2009, Nucleic acids research.
[20] A. S. Knight,et al. A Lin-9 complex is recruited by B-Myb to activate transcription of G2/M genes in undifferentiated embryonal carcinoma cells , 2009, Oncogene.
[21] Chris Q. Doe,et al. TU-tagging: cell type specific RNA isolation from intact complex tissues , 2009, Nature Methods.
[22] D. J. Clarke,et al. DNA Topoisomerases , 2009, Methods in Molecular Biology™.
[23] P. Jung,et al. AP4 encodes a c-MYC-inducible repressor of p21 , 2008, Proceedings of the National Academy of Sciences.
[24] R. Zimmer,et al. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. , 2008, RNA.
[25] L. Grabenhenrich,et al. Cell Cycle-Independent Expression of Immediate-Early Gene 3 Results in G1 and G2 Arrest in Murine Cytomegalovirus-Infected Cells , 2008, Journal of Virology.
[26] T. Shenk,et al. Dynamic Histone H3 Acetylation and Methylation at Human Cytomegalovirus Promoters during Replication in Fibroblasts , 2008, Journal of Virology.
[27] A. Zimmermann,et al. Mouse cytomegalovirus inhibits beta interferon (IFN-beta) gene expression and controls activation pathways of the IFN-beta enhanceosome. , 2008, The Journal of general virology.
[28] N. Timchenko,et al. Regulation of apoptotic and growth inhibitory activities of C/EBPalpha in different cell lines. , 2008, Experimental cell research.
[29] Albert Sickmann,et al. Inhibition of proinflammatory and innate immune signaling pathways by a cytomegalovirus RIP1-interacting protein , 2008, Proceedings of the National Academy of Sciences.
[30] G. Maul,et al. Differences between mouse and human cytomegalovirus interactions with their respective hosts at immediate early times of the replication cycle , 2008, Medical Microbiology and Immunology.
[31] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[32] A. Brehm,et al. LINC, a Human Complex That is Related to pRB-Containing Complexes in Invertebrates Regulates the Expression of G2/M Genes , 2007, Cell cycle.
[33] R. Everett,et al. PML and PML nuclear bodies: implications in antiviral defence. , 2007, Biochimie.
[34] W. Schmid,et al. Microarray analysis of newly synthesized RNA in cells and animals , 2007, Proceedings of the National Academy of Sciences.
[35] T. Compton,et al. Early events in human cytomegalovirus infection , 2007 .
[36] P. Moore,et al. Early events in human cytomegalovirus infection -- Human Herpesviruses: Biology, Therapy, and Immunoprophylaxis , 2007 .
[37] P. Moore,et al. DNA synthesis and late viral gene expression -- Human Herpesviruses: Biology, Therapy, and Immunoprophylaxis , 2007 .
[38] G. Pari,et al. DNA synthesis and late viral gene expression , 2007 .
[39] Bernard Roizman,et al. Human Herpesviruses: Biology, Therapy, and Immunoprophylaxis , 2007 .
[40] G. Wilkinson,et al. Human Daxx-mediated Repression of Human Cytomegalovirus Gene Expression Correlates with a Repressive Chromatin Structure around the Major Immediate Early Promoter* , 2006, Journal of Biological Chemistry.
[41] Thomas Shenk,et al. Dynamics of the Cellular Metabolome during Human Cytomegalovirus Infection , 2006, PLoS pathogens.
[42] Hélène Touzet,et al. Predicting transcription factor binding sites using local over-representation and comparative genomics , 2006, BMC Bioinformatics.
[43] T. Gilmore,et al. Introduction to NF-kappaB: players, pathways, perspectives. , 2006, Oncogene.
[44] H. A. Rogoff,et al. Human Cytomegalovirus IE1-72 Activates Ataxia Telangiectasia Mutated Kinase and a p53/p21-Mediated Growth Arrest Response , 2005, Journal of Virology.
[45] D. Ganem,et al. RNAs in the Virion of Kaposi's Sarcoma-Associated Herpesvirus , 2005, Journal of Virology.
[46] S. Jonjić,et al. A cytomegaloviral protein reveals a dual role for STAT2 in IFN-γ signaling and antiviral responses , 2005, The Journal of experimental medicine.
[47] N. Dyson,et al. The E2F transcriptional network: old acquaintances with new faces , 2005, Oncogene.
[48] B. Tian,et al. Two Gamma Interferon-Activated Site-Like Elements in the Human Cytomegalovirus Major Immediate-Early Promoter/Enhancer Are Important for Viral Replication , 2005, Journal of Virology.
[49] U. Koszinowski,et al. Conditional Cytomegalovirus Replication In Vitro and In Vivo , 2005, Journal of Virology.
[50] K. Helin,et al. The E2F family: specific functions and overlapping interests , 2004, The EMBO journal.
[51] T. Shenk,et al. Human cytomegalovirus immediate-early 1 protein facilitates viral replication by antagonizing histone deacetylation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[52] L. Hertel,et al. Global Analysis of Host Cell Gene Expression Late during Cytomegalovirus Infection Reveals Extensive Dysregulation of Cell Cycle Gene Expression and Induction of Pseudomitosis Independent of US28 Function , 2004, Journal of Virology.
[53] T. Shenk,et al. RNAs Are Packaged into Human Cytomegalovirus Virions in Proportion to Their Intracellular Concentration , 2004, Journal of Virology.
[54] T. Mazzulli,et al. Detection of RNA in purified cytomegalovirus virions. , 2004, Virus research.
[55] L. M. Rocha,et al. Evaluation of the host transcriptional response to human cytomegalovirus infection. , 2004, Physiological genomics.
[56] K. Ryan,et al. Life and death decisions by E2F-1 , 2004, Cell Death and Differentiation.
[57] T. Shenk,et al. Human cytomegalovirus UL83-coded pp65 virion protein inhibits antiviral gene expression in infected cells , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[58] M. Magnasco,et al. Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. , 2003, Genome research.
[59] P. Griffiths,et al. Two novel spliced genes in human cytomegalovirus. , 2003, The Journal of general virology.
[60] T. Shenk,et al. Human Cytomegalovirus pp71 Stimulates Cell Cycle Progression by Inducing the Proteasome-Dependent Degradation of the Retinoblastoma Family of Tumor Suppressors , 2003, Molecular and Cellular Biology.
[61] T. Shenk,et al. Proteasome-dependent, ubiquitin-independent degradation of the Rb family of tumor suppressors by the human cytomegalovirus pp71 protein , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[62] Qiyi Tang,et al. Mouse Cytomegalovirus Immediate-Early Protein 1 Binds with Host Cell Repressors To Relieve Suppressive Effects on Viral Transcription and Replication during Lytic Infection , 2003, Journal of Virology.
[63] G. Grosveld,et al. Daxx and histone deacetylase II associate with chromatin through an interaction with core histones and the chromatin-associated protein Dek. , 2002, Journal of cell science.
[64] G. Maul,et al. Daxx-Mediated Accumulation of Human Cytomegalovirus Tegument Protein pp71 at ND10 Facilitates Initiation of Viral Infection at These Nuclear Domains , 2002, Journal of Virology.
[65] H. Sindre,et al. Functional Interaction between the pp71 Protein of Human Cytomegalovirus and the PML-Interacting Protein Human Daxx , 2002, Journal of Virology.
[66] M. Karin,et al. Missing Pieces in the NF-κB Puzzle , 2002, Cell.
[67] Yoon-Jae Song,et al. Effect of the human cytomegalovirus IE86 protein on expression of E2F-responsive genes: A DNA microarray analysis , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[68] T. Shenk,et al. Construction of a rationally designed human cytomegalovirus variant encoding a temperature-sensitive immediate-early 2 protein , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[69] Thomas Shenk,et al. Altered Cellular mRNA Levels in Human Cytomegalovirus-Infected Fibroblasts: Viral Block to the Accumulation of Antiviral mRNAs , 2001, Journal of Virology.
[70] Triona Goode,et al. C/EBPα Arrests Cell Proliferation through Direct Inhibition of Cdk2 and Cdk4 , 2001 .
[71] B. Roizman,et al. RNAs Extracted from Herpes Simplex Virus 1 Virions: Apparent Selectivity of Viral but Not Cellular RNAs Packaged in Virions , 2001, Journal of Virology.
[72] P. Pandolfi,et al. Mzf1 controls cell proliferation and tumorigenesis. , 2001, Genes & development.
[73] M. Jackson,et al. Global modulation of cellular transcription by human cytomegalovirus is initiated by viral glycoprotein B , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[74] Sharon Roth,et al. The Growth Suppressor PML Represses Transcription by Functionally and Physically Interacting with Histone Deacetylases , 2001, Molecular and Cellular Biology.
[75] A. Marchini,et al. Human Cytomegalovirus with IE-2 (UL122) Deleted Fails To Express Early Lytic Genes , 2001, Journal of Virology.
[76] A. Welm,et al. C/EBPalpha arrests cell proliferation through direct inhibition of Cdk2 and Cdk4. , 2001, Molecular cell.
[77] T. Taniguchi,et al. IRF family of transcription factors as regulators of host defense. , 2001, Annual review of immunology.
[78] R. Buettner,et al. Regulatory roles of AP-2 transcription factors in vertebrate development, apoptosis and cell-cycle control. , 2000, Gene.
[79] K. Mühlemann,et al. Transcriptome analysis of fibroblast cells immediate-early after human cytomegalovirus infection. , 2000, Journal of molecular biology.
[80] Toshiyuki Miyata,et al. Herp, a New Ubiquitin-like Membrane Protein Induced by Endoplasmic Reticulum Stress* , 2000, The Journal of Biological Chemistry.
[81] H. Li,et al. PML and the oncogenic nuclear domains in regulating transcriptional repression. , 2000, Current opinion in cell biology.
[82] D. T. Kurtz,et al. C/EBPα Inhibits Cell Growth via Direct Repression of E2F-DP-Mediated Transcription , 2000, Molecular and Cellular Biology.
[83] T. Shenk,et al. A subset of viral transcripts packaged within human cytomegalovirus particles. , 2000, Science.
[84] R. Eisenman,et al. The Myc/Max/Mad network and the transcriptional control of cell behavior. , 2000, Annual review of cell and developmental biology.
[85] K. Zeller,et al. Function of the c-Myc oncogenic transcription factor. , 1999, Experimental cell research.
[86] M. Degli-Esposti,et al. The Murine Cytomegalovirus Chemokine Homolog, m131/129, Is a Determinant of Viral Pathogenicity , 1999, Journal of Virology.
[87] H. Virgin,et al. Spliced mRNA Encoding the Murine Cytomegalovirus Chemokine Homolog Predicts a β Chemokine of Novel Structure , 1999, Journal of Virology.
[88] T. Gingeras,et al. Cellular gene expression altered by human cytomegalovirus: global monitoring with oligonucleotide arrays. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[89] G. Maul. Nuclear domain 10, the site of DNA virus transcription and replication , 1998, BioEssays : news and reviews in molecular, cellular and developmental biology.
[90] E. Hwang,et al. The human cytomegalovirus UL55 (gB) and UL75 (gH) glycoprotein ligands initiate the rapid activation of Sp1 and NF-kappaB during infection , 1997, Journal of virology.
[91] G. Hayward,et al. The major immediate-early proteins IE1 and IE2 of human cytomegalovirus colocalize with and disrupt PML-associated nuclear bodies at very early times in infected permissive cells , 1997, Journal of virology.
[92] Jeng-Shin Lee,et al. Everything you have ever wanted to know about Yin Yang 1...... , 1997, Biochimica et biophysica acta.
[93] B. Plachter,et al. The nuclear domain 10 (ND10) is disrupted by the human cytomegalovirus gene product IE1. , 1996, Experimental cell research.
[94] S. Landolfo,et al. The murine cytomegalovirus immediate-early 1 protein stimulates NF-κ B activity by transactivating the NF-κ B p105/p50 promoter , 1996 .
[95] G. Maul,et al. The periphery of nuclear domain 10 (ND10) as site of DNA virus deposition , 1996, The Journal of cell biology.
[96] M. Klemsz,et al. Hematopoietic transcriptional regulation by the myeloid zinc finger gene, MZF-1. , 1996, Current topics in microbiology and immunology.
[97] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[98] Ru Liu,et al. The transcription factor YY1 binds to negative regulatory elements in the human cytomegalovirus major immediate early enhancer/promoter and mediates repression in non-permissive cells , 1994, Nucleic Acids Res..
[99] R. Timpl,et al. The laminins. , 1994, Matrix biology : journal of the International Society for Matrix Biology.
[100] A. Fornace,et al. Analysis of the mammalian gadd45 gene and its response to DNA damage. , 1993, The Journal of biological chemistry.
[101] R. Davis,et al. Transactivation of gene expression by Myc is inhibited by mutation at the phosphorylation sites Thr-58 and Ser-62. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[102] J. Sinclair,et al. The 72K IE1 and 80K IE2 proteins of human cytomegalovirus independently trans-activate the c-fos, c-myc and hsp70 promoters via basal promoter elements. , 1992, The Journal of general virology.
[103] A. Geballe,et al. Translational control of cytomegalovirus gene expression is mediated by upstream AUG codons , 1988, Journal of virology.
[104] R. Spaete,et al. A cis-acting element within the 5′ leader of a cytomegalovirus β transcript determines kinetic class , 1986, Cell.
[105] M. Stinski,et al. Temporal Patterns of Human Cytomegalovirus Transcription: Mapping the Viral RNAs Synthesized at Immediate Early, Early, and Late Times After Infection , 1982, Journal of virology.
[106] W. Melvin,et al. Incorporation of 6-thioguanosine and 4-thiouridine into RNA. Application to isolation of newly synthesised RNA by affinity chromatography. , 1978, European journal of biochemistry.