Widespread Translational Remodeling during Human Neuronal Differentiation.
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[1] Nicholas T Ingolia,et al. Transcriptome-wide measurement of translation by ribosome profiling. , 2017, Methods.
[2] Brian D. Freibaum,et al. The Role of Dipeptide Repeats in C9ORF72-Related ALS-FTD , 2017, Front. Mol. Neurosci..
[3] Rebecca D Hodge,et al. A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development. , 2017, Cell stem cell.
[4] Q. Morris,et al. MECP2 Is Post-transcriptionally Regulated during Human Neurodevelopment by Combinatorial Action of RNA-Binding Proteins and miRNAs. , 2016, Cell reports.
[5] B. Tian,et al. Alternative polyadenylation of mRNA precursors , 2016, Nature Reviews Molecular Cell Biology.
[6] A. Hinnebusch,et al. Translational control by 5′-untranslated regions of eukaryotic mRNAs , 2016, Science.
[7] Lior Pachter,et al. Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.
[8] Christine Mayr,et al. Evolution and Biological Roles of Alternative 3'UTRs. , 2016, Trends in cell biology.
[9] Melissa J. Moore,et al. Redefining the Translational Status of 80S Monosomes , 2016, Cell.
[10] R. Lehmann,et al. Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation. , 2016, Cell stem cell.
[11] Helen S. Bateup,et al. Establishment of Genome-edited Human Pluripotent Stem Cell Lines: From Targeting to Isolation , 2016, Journal of visualized experiments : JoVE.
[12] Eric T. Wang,et al. Distal Alternative Last Exons Localize mRNAs to Neural Projections. , 2016, Molecular cell.
[13] T. Preiss,et al. Embryonic Stem Cells Exhibit mRNA Isoform Specific Translational Regulation , 2016, PloS one.
[14] M. Robinson,et al. Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. , 2015, F1000Research.
[15] J. Doudna,et al. Tunable protein synthesis by transcript isoforms in human cells , 2015, bioRxiv.
[16] M. Barna,et al. Translating the genome in time and space: specialized ribosomes, RNA regulons, and RNA-binding proteins. , 2015, Annual review of cell and developmental biology.
[17] J. Coller,et al. Pausing on Polyribosomes: Make Way for Elongation in Translational Control , 2015, Cell.
[18] T. Jensen,et al. Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes , 2015, Nature Reviews Molecular Cell Biology.
[19] L. Pilaz,et al. Post‐transcriptional regulation in corticogenesis: how RNA‐binding proteins help build the brain , 2015, Wiley interdisciplinary reviews. RNA.
[20] Wei Li,et al. NUDT21-spanning CNVs lead to neuropsychiatric disease and altered MeCP2 abundance via alternative polyadenylation , 2015, eLife.
[21] J. Rosenfeld,et al. Author response: NUDT21-spanning CNVs lead to neuropsychiatric disease and altered MeCP2 abundance via alternative polyadenylation , 2015 .
[22] J. Manley,et al. ALS mutations in TLS/FUS disrupt target gene expression , 2015, Genes & development.
[23] H. Zoghbi,et al. MECP2 disorders: from the clinic to mice and back. , 2015, The Journal of clinical investigation.
[24] D. Bartel,et al. Predicting effective microRNA target sites in mammalian mRNAs , 2015, eLife.
[25] Benjamin J. Blencowe,et al. Alternative Splicing in the Mammalian Nervous System: Recent Insights into Mechanisms and Functional Roles , 2015, Neuron.
[26] M. Sachs. Faculty Opinions recommendation of eIF3 targets cell-proliferation messenger RNAs for translational activation or repression. , 2015 .
[27] Steven L Salzberg,et al. HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.
[28] N. Sonenberg,et al. Targeting the translation machinery in cancer , 2015, Nature Reviews Drug Discovery.
[29] G. Sauvageau,et al. Haploinsufficiency screen highlights two distinct groups of ribosomal protein genes essential for embryonic stem cell fate , 2015, Proceedings of the National Academy of Sciences.
[30] Rhiju Das,et al. RNA regulons in Hox 5′UTRs confer ribosome specificity to gene regulation , 2014, Nature.
[31] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[32] A. Quinlan. BEDTools: The Swiss‐Army Tool for Genome Feature Analysis , 2014, Current protocols in bioinformatics.
[33] R. Blelloch,et al. Regulation of microRNA function in somatic stem cell proliferation and differentiation , 2014, Nature Reviews Molecular Cell Biology.
[34] E. Lai,et al. Alternative polyadenylation in the nervous system: To what lengths will 3′ UTR extensions take us? , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.
[35] Alex A. Pollen,et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex , 2014, Nature Biotechnology.
[36] S. Joseph,et al. Fragile X mental retardation protein regulates translation by binding directly to the ribosome. , 2014, Molecular cell.
[37] P. Brown,et al. Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments , 2014, eLife.
[38] Michael T. McManus,et al. Massively parallel functional annotation of 3' untranslated regions , 2014, Nature Biotechnology.
[39] Jeffrey A. Magee,et al. Haematopoietic stem cells require a highly regulated protein synthesis rate , 2014, Nature.
[40] Rachel Green,et al. Dom34 Rescues Ribosomes in 3′ Untranslated Regions , 2014, Cell.
[41] Nicholas T. Ingolia. Ribosome profiling: new views of translation, from single codons to genome scale , 2014, Nature Reviews Genetics.
[42] Julie L. Yang,et al. Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression , 2013, Genes & development.
[43] A. Bordey,et al. mTORC1 targets the translational repressor 4E-BP2, but not S6 kinase 1/2, to regulate neural stem cell self-renewal in vivo. , 2013, Cell reports.
[44] C. Holt,et al. The Central Dogma Decentralized: New Perspectives on RNA Function and Local Translation in Neurons , 2013, Neuron.
[45] Sol Katzman,et al. Frac-seq reveals isoform-specific recruitment to polyribosomes , 2013, Genome research.
[46] J. Lacaille,et al. Reactivation of stalled polyribosomes in synaptic plasticity , 2013, Proceedings of the National Academy of Sciences.
[47] Robert B Darnell,et al. RNA protein interaction in neurons. , 2013, Annual review of neuroscience.
[48] K. Shokat,et al. Myc and mTOR converge on a common node in protein synthesis control that confers synthetic lethality in Myc-driven cancers , 2013, Proceedings of the National Academy of Sciences.
[49] R. Elkon,et al. Alternative cleavage and polyadenylation: extent, regulation and function , 2013, Nature Reviews Genetics.
[50] Joshua A. Arribere,et al. Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing , 2013, Genome research.
[51] E. Lai,et al. Widespread and extensive lengthening of 3′ UTRs in the mammalian brain , 2013, Genome research.
[52] J. Darnell,et al. The translation of translational control by FMRP: therapeutic targets for FXS , 2013, Nature Neuroscience.
[53] Christos G. Gkogkas,et al. Autism-related deficits via dysregulated eIF4E-dependent translational control , 2012, Nature.
[54] S. Whelan,et al. A ribosome-specialized translation initiation pathway is required for cap-dependent translation of vesicular stomatitis virus mRNAs , 2012, Proceedings of the National Academy of Sciences.
[55] M. Levine,et al. ELAV mediates 3' UTR extension in the Drosophila nervous system. , 2012, Genes & development.
[56] B. Strunk,et al. A Translation-Like Cycle Is a Quality Control Checkpoint for Maturing 40S Ribosome Subunits , 2012, Cell.
[57] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..
[58] D. Sabatini,et al. A unifying model for mTORC1-mediated regulation of mRNA translation , 2012, Nature.
[59] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[60] Nicholas T. Ingolia,et al. High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling , 2011, Science.
[61] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[62] J. García-Verdugo,et al. Sustained activation of mTOR pathway in embryonic neural stem cells leads to development of tuberous sclerosis complex-associated lesions. , 2011, Cell stem cell.
[63] M. Levine,et al. Neural-specific elongation of 3′ UTRs during Drosophila development , 2011, Proceedings of the National Academy of Sciences.
[64] D. Licatalosi,et al. FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism , 2011, Cell.
[65] M. Greenberg,et al. Neuronal activity-regulated gene transcription in synapse development and cognitive function. , 2011, Cold Spring Harbor perspectives in biology.
[66] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[67] Y. Qi,et al. Nuclear pre-mRNA 3′-end processing regulates synapse and axon development in C. elegans , 2010, Development.
[68] Jennifer A. Erwin,et al. Derivation of Pre-X Inactivation Human Embryonic Stem Cells under Physiological Oxygen Concentrations , 2010, Cell.
[69] D. Felsher,et al. MYC as a regulator of ribosome biogenesis and protein synthesis , 2010, Nature Reviews Cancer.
[70] J. Graber,et al. Global changes in processing of mRNA 3' untranslated regions characterize clinically distinct cancer subtypes. , 2009, Cancer research.
[71] Eric T. Wang,et al. An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data , 2009, PLoS Comput. Biol..
[72] C. Mayr,et al. Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells , 2009, Cell.
[73] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[74] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[75] M. Tomishima,et al. Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling , 2009, Nature Biotechnology.
[76] N. Sonenberg,et al. Translational Control of Long-Lasting Synaptic Plasticity and Memory , 2009, Neuron.
[77] Mark F. Bear,et al. The Autistic Neuron: Troubled Translation? , 2008, Cell.
[78] G. Seydoux,et al. 3′ UTRs Are the Primary Regulators of Gene Expression in the C. elegans Germline , 2008, Current Biology.
[79] N. Woo,et al. Distinct Role of Long 3′ UTR BDNF mRNA in Spine Morphology and Synaptic Plasticity in Hippocampal Neurons , 2008, Cell.
[80] P. Sharp,et al. Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites , 2008, Science.
[81] Lil Pabon,et al. A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation. , 2008, Cell stem cell.
[82] Pamela A. Silver,et al. Functional Specificity among Ribosomal Proteins Regulates Gene Expression , 2007, Cell.
[83] P. Walker,et al. Role of Sox2 in the development of the mouse neocortex. , 2006, Developmental biology.
[84] Y. Kim,et al. Derivation and Characterization of New Human Embryonic Stem Cell Lines: SNUhES1, SNUhES2, and SNUhES3 , 2005, Stem cells.
[85] A. Bird,et al. The major form of MeCP2 has a novel N-terminus generated by alternative splicing. , 2004, Nucleic acids research.
[86] Amarendra S. Yavatkar,et al. StemCellDB: the human pluripotent stem cell database at the National Institutes of Health. , 2013, Stem cell research.
[87] M. Tomishima,et al. Converting human pluripotent stem cells to neural tissue and neurons to model neurodegeneration. , 2011, Methods in molecular biology.